SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73080 | AT | Annotation by Michelle Graham. TAIR10: PEP1 receptor 1 | chr1:27484513-27488021 FORWARD LENGTH=1123 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006955 | GO-bp | Annotation by Michelle Graham. GO Biological Process: immune response | SoyBase | N/A | ISS |
| GO:0007169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0052542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0001653 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peptide receptor activity | SoyBase | N/A | ISS |
| GO:0004383 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanylate cyclase activity | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG1187 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF471 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| PF08263 | PFAM | Leucine rich repeat N-terminal domain | JGI | ISS | |
| UniRef100_G7ZYC8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7ZYC8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DC14 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DC14 related cluster n=1 Tax=unknown RepID=UPI000233DC14 | SoyBase | E_val: 0 | ISS |
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Glyma20g33620 not represented in the dataset |
Glyma20g33620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g33970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g194400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g33620.1 sequence type=CDS gene model=Glyma20g33620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTATTTGTATCTCTTGCTGATTTCATATTTGTCTGCCTTGTTGTATGCTGCTTCTGCATTGAACTCTGATGGGTTGGCTTTGTTGTCCCTCTTGAGGGACTGGACTATTGTGCCTAGTGACATAAACTCCACATGGAAGTTGTCTGATTCCACTCCGTGCTCATCTTGGGCAGGAGTGCATTGTGATAATGCCAATAATGTGGTTTCTCTAAACCTCACTAGTTATTCTATTTTTGGTCAATTAGGACCTGATCTTGGACGTATGGTTCACTTGCAAACCATAGACTTATCATATAATGATCTATTTGGAAAAATTCCCCCAGAATTAGACAACTGTACCATGCTTGAGTACTTGGACCTTTCTGTAAACAACTTTAGTGGAGGAATACCTCAGAGCTTCAAAAACTTGCAAAATTTGAAGCATATAGACCTTTCATCTAATCCGCTGAATGGTGAAATTCCTGAACCCTTGTTTGACATTTATCACCTGGAAGAAGTGTATCTTAGCAACAACAGTTTGACTGGTTCAATTTCCTCAAGTGTTGGGAATATCACTAAGCTTGTCACACTGGATCTTTCTTATAATCAGCTGTCAGGGACAATTCCCATGTCCATTGGAAATTGTAGTAACTTAGAGAATCTATATTTGGAAAGGAATCAATTAGAGGGAGTTATTCCTGAGAGTCTAAATAATCTCAAAAATCTTCAGGAGTTATTTCTCAATTATAATAACCTTGGAGGCACTGTTCAATTGGGAACTGGAAATTGCAAAAAGTTGTCTAGTTTAAGTCTTTCTTACAATAACTTCAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGCGGTCTAATGGAGTTTTATGCTGCACGGAGTAACTTAGTTGGCAGTATACCATCAACCTTGGGCCTCATGCCCAACCTTTCTCTTCTAATCATTCCAGAGAACCTATTGTCTGGGAAAATACCTCCACAGATTGGTAATTGCAAAGCACTGGAAGAGTTGCGTTTGAATTCCAATGAACTTGAGGGAGAAATTCCCAGTGAATTGGGAAACTTGAGTAAATTACGCGACCTTAGATTGTATGAAAACCTTTTGACAGGAGAAATTCCACTTGGCATATGGAAAATTCAAAGCCTTGAGCAGATCTATCTGTACATTAATAACCTTTCGGGGGAGCTACCTTTTGAGATGACAGAGCTCAAACATCTTAAGAATATCTCCTTGTTTAACAACCAGTTCTCCGGAGTCATACCTCAAAGTTTAGGAATCAATAGCAGTTTGGTGGTGTTAGACTTCATGTATAATAATTTCACTGGTACCCTTCCACCAAATCTTTGTTTTGGAAAGCAACTGGTGAAGCTGAATATGGGTGTCAATCAATTTTATGGTAACATACCTCCAGATGTGGGAAGGTGTACAACTCTTACAAGGGTGAGACTTGAAGAAAATCATTTCACTGGGTCTCTTCCTGATTTTTATATTAATCCAAATCTCTCTTACATGAGCATCAACAACAACAATATCAGTGGAGCAATTCCATCAAGTTTGGGAAAATGCACAAATCTCTCTCTTTTAAATTTGTCCATGAACAGCTTGACGGGTCTTGTACCTTCAGAGCTTGGAAACCTTGAGAATCTCCAGACTTTGGATCTTTCTCACAATAACTTGGAAGGTCCTTTGCCACATCAGCTGTCAAACTGTGCCAAAATGATCAAGTTTGATGTCAGATTCAATTCCTTGAATGGTTCGGTTCCATCAAGTTTTCGGAGCTGGACAACATTAACAGCTTTAATTCTCTCAGAGAATCATTTTAATGGTGGTATCCCAGCTTTCTTGTCAGAATTTAAAAAGCTCAACGAGTTACAACTTGGTGGAAACATGTTTGGAGGAAACATTCCTAGATCAATCGGAGAGCTGGTGAATTTGATATATGAACTAAATCTAAGTGCTACTGGGCTGATAGGTGAGCTTCCTAGGGAGATTGGAAACCTGAAGAGTCTGCTAAGCCTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAAGTTCTTGATGGGCTCAGTTCATTATCTGAATTCAACATCTCATATAATTCTTTTGAAGGTCCTGTGCCACAACAGCTAACAACATTACCAAACTCTTCTTTATCATTTTTGGGCAATCCTGGCCTGTGTGGCTCGAATTTCACTGAGAGCAGCTATTTAAAGCCTTGTGACACAAATTCAAAAAAGTCAAAAAAGCTCAGTAAAGTTGCAACTGTGATGATAGCACTTGGATCTGCAATATTTGTTGTTCTGCTGCTGTGGTTAGTATATATATTCTTTATCAGAAAAATTAAGCAAGAAGCCATAATCATTAAGGAAGATGATTCTCCAACCCTTCTTAACGAAGTGATGGAAGCTACAGAAAATCTAAATGATGAGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTTTATAAAGCAGCAATAGGTCCAGACAAAACATTGGCTATAAAGAAGTTTGTATTTTCTCATGAAGGGAAAAGCTCAAGCATGACCAGAGAAATTCAAACCCTTGGAAAGATTAGGCATCGAAATTTAGTCAAATTGGAAGGGTGCTGGTTGAGAGAAAACTATGGTCTAATTGCATACAAATACATGCCAAATGGAAGCCTACATGATGCTTTGCATGAGAAGAATCCACCATACTCCTTAGAATGGATTGTTCGGAATAACATAGCACTTGGAATTGCTCACGGATTGACTTATCTCCATTATGACTGTGATCCTGTCATAGTGCACAGAGATATCAAAACAAGCAACATACTTCTAGATTCAGAAATGGAGCCTCATATTGCAGATTTTGGTATTGCTAAACTTATAGATCAGCCTTCTACCTCAACACAGTTATCATCTGTTGCTGGTACACTTGGTTATATAGCACCAGAGAATGCTTATACAACAACAAAGGGTAAGGAATCTGATGTATACAGTTATGGGGTAGTTTTGCTGGAGCTGATATCCAGAAAGAAGCCATTGGATGCATCATTTATGGAAGGAACGGATATAGTTAATTGGGCAAGATCTGTCTGGGAGGAAACGGGAGTTGTTGATGAAATTGTTGATCCAGAGCTGGCTGATGAAATTTCAAATTCTGAAGTGATGAAACAAGTTACCAAGGTGCTTTTGGTGGCTTTGAGATGCACTGAAAAGGATCCACGTAAGAGACCTACGATGAGGGATGTTATCAGGCATTTGTAG
>Glyma20g33620.1 sequence type=predicted peptide gene model=Glyma20g33620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGYLYLLLISYLSALLYAASALNSDGLALLSLLRDWTIVPSDINSTWKLSDSTPCSSWAGVHCDNANNVVSLNLTSYSIFGQLGPDLGRMVHLQTIDLSYNDLFGKIPPELDNCTMLEYLDLSVNNFSGGIPQSFKNLQNLKHIDLSSNPLNGEIPEPLFDIYHLEEVYLSNNSLTGSISSSVGNITKLVTLDLSYNQLSGTIPMSIGNCSNLENLYLERNQLEGVIPESLNNLKNLQELFLNYNNLGGTVQLGTGNCKKLSSLSLSYNNFSGGIPSSLGNCSGLMEFYAARSNLVGSIPSTLGLMPNLSLLIIPENLLSGKIPPQIGNCKALEELRLNSNELEGEIPSELGNLSKLRDLRLYENLLTGEIPLGIWKIQSLEQIYLYINNLSGELPFEMTELKHLKNISLFNNQFSGVIPQSLGINSSLVVLDFMYNNFTGTLPPNLCFGKQLVKLNMGVNQFYGNIPPDVGRCTTLTRVRLEENHFTGSLPDFYINPNLSYMSINNNNISGAIPSSLGKCTNLSLLNLSMNSLTGLVPSELGNLENLQTLDLSHNNLEGPLPHQLSNCAKMIKFDVRFNSLNGSVPSSFRSWTTLTALILSENHFNGGIPAFLSEFKKLNELQLGGNMFGGNIPRSIGELVNLIYELNLSATGLIGELPREIGNLKSLLSLDLSWNNLTGSIQVLDGLSSLSEFNISYNSFEGPVPQQLTTLPNSSLSFLGNPGLCGSNFTESSYLKPCDTNSKKSKKLSKVATVMIALGSAIFVVLLLWLVYIFFIRKIKQEAIIIKEDDSPTLLNEVMEATENLNDEYIIGRGAQGVVYKAAIGPDKTLAIKKFVFSHEGKSSSMTREIQTLGKIRHRNLVKLEGCWLRENYGLIAYKYMPNGSLHDALHEKNPPYSLEWIVRNNIALGIAHGLTYLHYDCDPVIVHRDIKTSNILLDSEMEPHIADFGIAKLIDQPSTSTQLSSVAGTLGYIAPENAYTTTKGKESDVYSYGVVLLELISRKKPLDASFMEGTDIVNWARSVWEETGVVDEIVDPELADEISNSEVMKQVTKVLLVALRCTEKDPRKRPTMRDVIRHL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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