Report for Sequence Feature Glyma20g33600
Feature Type: gene_model
Chromosome: Gm20
Start: 42193608
stop: 42198850
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g33600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G10620 AT
Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 26 | chr3:3320263-3321565 FORWARD LENGTH=216
SoyBase E_val: 2.00E-99 ISS
GO:0006753 GO-bp
Annotation by Michelle Graham. GO Biological Process: nucleoside phosphate metabolic process
SoyBase N/A ISS
GO:0019243 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0004081 GO-mf
Annotation by Michelle Graham. GO Molecular Function: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity
SoyBase N/A ISS
GO:0008893 GO-mf
Annotation by Michelle Graham. GO Molecular Function: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
SoyBase N/A ISS
GO:0034432 GO-mf
Annotation by Michelle Graham. GO Molecular Function: bis(5'-adenosyl)-pentaphosphatase activity
SoyBase N/A ISS
KOG2839
KOG
Diadenosine and diphosphoinositol polyphosphate phosphohydrolase
JGI ISS
PTHR11839 Panther
UDP/ADP-SUGAR PYROPHOSPHATASE
JGI ISS
PF00293 PFAM
NUDIX domain
JGI ISS
UniRef100_G7I409 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=1 Tax=Medicago truncatula RepID=G7I409_MEDTR
SoyBase E_val: 5.00E-114 ISS
UniRef100_I1NHU0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHU0_SOYBN
SoyBase E_val: 3.00E-144 ISS
Expression Patterns of Glyma20g33600
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g33600
Paralog Evidence Comments
Glyma10g33990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g33600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g194200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g33600
Coding sequences of Glyma20g33600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g33600.1 sequence type=CDS gene model=Glyma20g33600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTTATACCGATTCGCTTACTTTTCTTCTCCTCCTTCCTCCATTTTTCGTTTCCCGAAATACCCTTCGAAACACGTTAAATTCTCTTTGCTGCCACTCTCATTCGCAACGATGGAAGCTCCTCCAGAAGGTTATCGCAGGAACGTTGGTATCTGTCTCATGAGCAATCACAAAAAGATTTTCGCGGCTTCGAGGCTCGACATTCCCAATTCTTGGCAAATGCCTCAGGGTGGTATTGATGAAGGTGAGGATCCAAGAAATGCAGCCATCAGGGAATTAAGAGAAGAGACAGGAGTTAATTCTGCAGAAGTGATTGCTGAGGTACCATATTGGTTAACTTATGACTTCCCACCAAAAGTAAGGGAGAAATTAAATATTCAGTGGGGATCTGATTGGAAGGGTCAGGCACAGAAATGGTTTCTTTTTAAGTTCACTGGACAAGATCAAGAAATTAATCTTTTGGGTGATGGTACTGAGAAAGCTGAGTTTGGGGAATGGTCATGGATATCACCTGAACAAGTAATTGAGCTTGCAGTGGATTTCAAGAAACCTGTCTACAAGGAAGTCTTAGCAGTGTTTGCTCCATATTTCCAATAA
Predicted protein sequences of Glyma20g33600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g33600.1 sequence type=predicted peptide gene model=Glyma20g33600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALYRFAYFSSPPSSIFRFPKYPSKHVKFSLLPLSFATMEAPPEGYRRNVGICLMSNHKKIFAASRLDIPNSWQMPQGGIDEGEDPRNAAIRELREETGVNSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGTEKAEFGEWSWISPEQVIELAVDFKKPVYKEVLAVFAPYFQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
