Report for Sequence Feature Glyma20g33470
Feature Type: gene_model
Chromosome: Gm20
Start: 42077454
stop: 42080669
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g33470
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G48450 AT
Annotation by Michelle Graham. TAIR10: SKU5 similar 3 | chr5:19632791-19635612 REVERSE LENGTH=621
SoyBase E_val: 1.00E-171 ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
KOG1263
KOG
Multicopper oxidases
JGI ISS
PTHR11709 Panther
MULTI-COPPER OXIDASE
JGI ISS
PTHR11709:SF11 Panther
MULTICOPPER OXIDASE-RELATED
JGI ISS
PF00394 PFAM
Multicopper oxidase
JGI ISS
PF07731 PFAM
Multicopper oxidase
JGI ISS
PF07732 PFAM
Multicopper oxidase
JGI ISS
UniRef100_B9T3G7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9T3G7_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233DBCF UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233DBCF related cluster n=1 Tax=unknown RepID=UPI000233DBCF
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g33470
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g33470
Paralog Evidence Comments
Glyma10g34110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g33470 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g192900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g33470
Coding sequences of Glyma20g33470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g33470.2 sequence type=CDS gene model=Glyma20g33470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCAGGTTCTGCTGGTGATCGACTCAAACTTGTAACATGTGCAATTGTGCTGCTACCATTCCTTGTCACAATAGCCTCAAGTGCTGATATATTCCTTGATTGGCACGTTTCCACTGACATTAATTTAAAGCCTGTGTCTACTGATCAACCAGTCATAACAATCAATGGCATGTTCCCTGGACCCCTTATAAATGCAACAACAAATGATGTTGTTCATGTCAATGTTTTCAACGATTTGGATGATCCCTTGCTGTTTACATGGAATGGCATACAGCAAAGGCTAGATTCATGGGAAGATGGAGTGTCTGGCACAAACTGTCCCATCCAACCAGGCAGGAATTGGACTTATGAATTCCAAACCAAAGACCAGATTGGCACATTCTTCTACTTTCCTTCCATCAATTTCCTCAAAGCTGGTGGAGGGTTTGGTCCAATTCGAGTCAACAATCGACCCGTGATAAGTGTTCCTTTTCCAAAACCTGAGGCAGAGTTTGATTTTCTAATTGGTGACTGGCACAGCAGTAGCTACAAGGATATTAGGTCCAGGTTGGATGCGTCGGATGTTCTTCCTCCTGATTGGATGCTAATAAACGGAAAAGGACCATATATGAACAATTTATCTCTATCATATGAGACCTTCAATGTTACACAAGGTAAAACATATTTGCTCAGGATATCAAACGTAGGGACAGCCTGGAGCTTCAATTTCAGGATTCAAAACCATCAAATGGTTTTGGCTGAAACTGAAGGTTCTTATGTCAATCAAATAGAGTTGGAGTCTCTTGATGTTCATGTAGGCCAATCCTACTCAGTTCTTGTCACAGCAAACCAAAGTGCTGCTGATTACTACATAGTGGCCTCTCCCAAAATGAGTAATGCCACAAATAATAACACTCTTGTCGGTGTCGCTGTGCTTCATTATGATAACTCTACCACACCGGCTACTGGTTCTCTGCCAAGTGGTCCAGATCCATTTGATCTGCAATTCTCCATCAACCAAGCAAAATCCATTAGGTGGAACCTCACTACTGGAGCTGCAAGGCCTAATCCTCAGGGAACGTTCAATGTAAAAAATGTGGCAATATCTGAGACTTTCATTTTCCAGGCATCAACAGCAGTGGTTGATGGTTTATATCGCTACACTGTCAACAATGTGTCTTACTTGACCCCAAATACACCACTGAAGCTAGCTGATTACTTTTCTAACGGAACTGGAGTATATGAACTTGATGCTTATTCTAAGAACAGTTCAAATGTTAATGCTGTGCGTGGAGTTTTCGTAGCCAGTGCATTACATAAAGGGTGGACGGAGATAGTGCTCAAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATACAGCTTCTTTGTTGTCGGGATTGGGGAAGGAGAATGGAATCCAGAATCACGGTCAAGTTATAACCTTAATGATCCTGTTGCTCGCTCCACTGTGCAAGTGTACCCTGGAGGGTGGAGTGCAGTGTATGTGTACCCTGACAACCCTGGAATGTGGAACCTGCGATCACAGAACTTGCAAAGCTGGTATTTAGGTGAAGAGCTCTATGTGAGGGTTTATGATGCTGATCCCAACCCTGCCAAGGAGAAGCCACCTCCACAGAATCTCCTTCTATGTGGCTTTTTTCAACCTTCACCTCCACCATTAAACGAACATAATCCAAATGCTCCTTCAGTGTCCCCAGCACCAAATTCTCCATCATCCAAAGCATGCAAGCAAAATGCTCCTTCAGTGTCCCCAGAACCAAATGCTCCATCGCCCAAGGCATATAATCCAAATTCTCCCTCAGTGTCCCCAGCACCAAATGCTCCATCGCCCGAGGCATATAATCCAAATTCTCCCTCAGTGTCCCCAGCACCAAATGCTCCATCATCCAAGGCATATAATCCACATAGAACAAGGCTAATATGTGTTCTTTGTAATAACAACAATAGGTCTCTGATTGCTGTGATCACCACTGCCTTGTGTTTCCTCTATATTGGTCTCCATTAA
Predicted protein sequences of Glyma20g33470
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g33470.2 sequence type=predicted peptide gene model=Glyma20g33470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAGSAGDRLKLVTCAIVLLPFLVTIASSADIFLDWHVSTDINLKPVSTDQPVITINGMFPGPLINATTNDVVHVNVFNDLDDPLLFTWNGIQQRLDSWEDGVSGTNCPIQPGRNWTYEFQTKDQIGTFFYFPSINFLKAGGGFGPIRVNNRPVISVPFPKPEAEFDFLIGDWHSSSYKDIRSRLDASDVLPPDWMLINGKGPYMNNLSLSYETFNVTQGKTYLLRISNVGTAWSFNFRIQNHQMVLAETEGSYVNQIELESLDVHVGQSYSVLVTANQSAADYYIVASPKMSNATNNNTLVGVAVLHYDNSTTPATGSLPSGPDPFDLQFSINQAKSIRWNLTTGAARPNPQGTFNVKNVAISETFIFQASTAVVDGLYRYTVNNVSYLTPNTPLKLADYFSNGTGVYELDAYSKNSSNVNAVRGVFVASALHKGWTEIVLKNNLDIIDTWHLDGYSFFVVGIGEGEWNPESRSSYNLNDPVARSTVQVYPGGWSAVYVYPDNPGMWNLRSQNLQSWYLGEELYVRVYDADPNPAKEKPPPQNLLLCGFFQPSPPPLNEHNPNAPSVSPAPNSPSSKACKQNAPSVSPEPNAPSPKAYNPNSPSVSPAPNAPSPEAYNPNSPSVSPAPNAPSSKAYNPHRTRLICVLCNNNNRSLIAVITTALCFLYIGLH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
