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Report for Sequence Feature Glyma20g33460

Feature Type:gene_model
Chromosome:Gm20
Start:42071418
stop:42075230
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g33460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12420AT Annotation by Michelle Graham. TAIR10: Cupredoxin superfamily protein | chr4:7349941-7352868 REVERSE LENGTH=587 SoyBaseE_val: 3.00E-176ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009932GO-bp Annotation by Michelle Graham. GO Biological Process: cell tip growth SoyBaseN/AISS
GO:0010817GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels SoyBaseN/AISS
GO:0016051GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process SoyBaseN/AISS
GO:0030243GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0031225GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane SoyBaseN/AISS
GO:0046658GO-cc Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF11Panther MULTICOPPER OXIDASE-RELATED JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_B9T3G7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9T3G7_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233DBCEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DBCE related cluster n=1 Tax=unknown RepID=UPI000233DBCE SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g33460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g33460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g192800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g33460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g33460
>Glyma20g33460.1   sequence type=CDS   gene model=Glyma20g33460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCAGGTTCTGCTGGTCCTCAACTGAAACATGTTACATGTGCAATTGTGCTGCTACCATTCTTTGTTACAATGACCACTAGTGCTGATATATTCCTTGATTGGCACGTTTCCGCTGACTTCAATTTAAAGCCTGTGTCCACTGATCAACCGGTAATTACAATCAATGGCATGTTCCCTGGACCCCTTATAAATGCAACAACAAATGATAATATTCATGTCAATGTTTTCAATGATTTGGATGATCCCTTGCTGTTTACATGGAATGGCATACAGCAAAGGCTAGACTCATGGCAAGATGGAGTGTCTGGCACAAACTGCCCTATCCAACCTGGCAAGAATTGGACTTATGATTTCCAAGCCAAAGACCAGATTGGCACATTCTTCTACTTTCCTTCCATCAATTTCCTTAAGGCTGGTGGAGGGTTTGGTCCAATTCGAGTCAACAATCGACCCTTGATTAGCGTTCCTTTTCCAAAACCTGAGGCAGAGTTTGATCTTCTAATTGGTGACTGGTACATCAGTAGCTACAAGGACATTAGGTCCAGGTTGAATACGGCAGATGTTCCTTCTCCTGATTGGATGCTAATAAACGGAAAAGGACCATATATGAACAATCTTTCTCAATCATATGAGACCTTCAATGTTACACAAGGCAAGACATATTTGCTTAGGATATCAAACGTAGGGACAGCCTGGAGCTTCAATTTCAGGATTCAAAATCATCAACTGGTTTTGGTTGAAACTGAAGGTTCTTATGTCAATCAAATAGAGCTGGAGTCTCTTGATGTTCATGTAGGCCAATCCTACTCAGTTCTTGTCACAGCAAACCAAAATGCTGTTGATTACTACATAGTAGCCTCTCCTAAACTGAGTAATGCCACAAATAATAACACTCTTGTTGGCGTTGCTGTGCTTCATTATGACAACTCTACCACACCGGCTAATGGGTCTCTTCCAAGTGGTCCAGATCCATTTGATCTGCAATTCTCCATCAACCAAGCAAAATCCATTAGGTGGAACCTCACCACTGGAGCTGCAAGGCCTAATCCCCAGGGAATGTTCAATGTAACAAATGTGACAATAATTGAAACTTTCATTCTAAACGCATCAACAGCAACTATTGATGGATTATCTCGCTATTCTGTCAACAATGTGTCTTACTTGATCCCAGATACACCACTGAAACTAGCTGATTTCTTTTCCAATGGAACTGGTGTATATGAACTTGATGCTTTTTCTAAGAACACTTCAAATGCTAACGCCGTGCGTGGAGTTTTCGTAGCTAGTGCATTACATAAAGGGTGGACTGAGATAGTGCTAGAAAACAATTTAGACATCATTGATACTTGGCATTTGGATGGATATAGCTTCTTTGTTGTTGGAATGGGGGAAGGAGATTGGAATCCAGAATCCCGGTCAAGTTATAACCTTTATGATCCTGTTGCTCGCTCCACTGTGCAAGTGTACCCTGGAGGGTGGAGTTCAGTGTATGTGTACCCTGACAACCCTGGAATGTGGAACCTAAGATCACAGAACTTGCAAAGCTGGTATTTAGGTGAAGAGCTCTATGTGAGGGTTTATGATGCTGATCCCAACCCTGCCAAGGAGAAGCCACCTCCACAGAATCTCCTTCTATGTGGCAAGTATCAGCCACCAACCCCTCCTCCCTCAGTGTCCCCAGCACCAAATGCTCCATCATCCAACGCATATGCATATAATCCACATAGAACAAGGTCTCTGATTGCTATGATCACCACTGCTATATGTTTGTTCTATATTGATCTCCATTAA
Predicted protein sequences of Glyma20g33460
>Glyma20g33460.1   sequence type=predicted peptide   gene model=Glyma20g33460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAGSAGPQLKHVTCAIVLLPFFVTMTTSADIFLDWHVSADFNLKPVSTDQPVITINGMFPGPLINATTNDNIHVNVFNDLDDPLLFTWNGIQQRLDSWQDGVSGTNCPIQPGKNWTYDFQAKDQIGTFFYFPSINFLKAGGGFGPIRVNNRPLISVPFPKPEAEFDLLIGDWYISSYKDIRSRLNTADVPSPDWMLINGKGPYMNNLSQSYETFNVTQGKTYLLRISNVGTAWSFNFRIQNHQLVLVETEGSYVNQIELESLDVHVGQSYSVLVTANQNAVDYYIVASPKLSNATNNNTLVGVAVLHYDNSTTPANGSLPSGPDPFDLQFSINQAKSIRWNLTTGAARPNPQGMFNVTNVTIIETFILNASTATIDGLSRYSVNNVSYLIPDTPLKLADFFSNGTGVYELDAFSKNTSNANAVRGVFVASALHKGWTEIVLENNLDIIDTWHLDGYSFFVVGMGEGDWNPESRSSYNLYDPVARSTVQVYPGGWSSVYVYPDNPGMWNLRSQNLQSWYLGEELYVRVYDADPNPAKEKPPPQNLLLCGKYQPPTPPPSVSPAPNAPSSNAYAYNPHRTRSLIAMITTAICLFYIDLH*






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