SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10500 | AT | Annotation by Michelle Graham. TAIR10: NAC domain containing protein 53 | chr3:3271718-3273887 FORWARD LENGTH=549 | SoyBase | E_val: 1.00E-103 | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009819 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drought recovery | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:2000377 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF02365 | PFAM | No apical meristem (NAM) protein | JGI | ISS | |
| UniRef100_D9ZJA8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NAC domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJA8_MALDO | SoyBase | E_val: 3.00E-136 | ISS |
| UniRef100_UPI000233DB32 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DB32 related cluster n=1 Tax=unknown RepID=UPI000233DB32 | SoyBase | E_val: 0 | ISS |
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Glyma20g33390 not represented in the dataset |
Glyma20g33390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g192300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g33390.1 sequence type=CDS gene model=Glyma20g33390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACGGATGGGCCCAGGGTTCCGATTCCACCCCACCGACGAAGAGCTGGTGGTGTTCTACCTGAAGCGCAAGATGACCGGAAACCTCTCCCGCTACGACCACATCGCCGTTGTCGACGTCTACAAGCTCGAGCCCTGGGACCTTCCCCCTCTGTCGAAGCTGAAGACGAAGGACTTGGAATGGTACTTCTTCAGCGCGCTGGACCGCAAGTACGGAAACGGGTCGAGGACGAACCGCGCCACCGATAGGGGCTACTGGAAGACCACCGGAAAAGACCGCCCCGTCACCCACGGCGACCGCACCGTCGGAATGAAGAAGACGCTCGTTTACCACAGCGGCCGGGCCCCACACGGGCGCCGCACCAATTGGGTCATGCACGAGTACAAGATGCTCGACGAGGAATTGGCACGTGCCGGCACAGTGCCGGATGTGTTTGTGGTGTGTAGGATTTTCGAGAAGAGTGGTTCTGGGCCGAAGAATGGGGCAAAATATGGTGCTCCCTTAGATGAGAAGGAGTGGGATGTTGAGGATGAGCAGGAGGAGGAGGAGGAGGAGAATGAGCAGAAGGACGTGGCTCCCTTGCTGGTTCCTCATAACGCGGTGGCTCCTCCTCCTCCCTTGTCGGTAGTTGCTGATAATGCGGAGGCTCATCCTCCTTTGACGGCAACTGTTGATAATAAATATATGGTGGCTCCTCCTCCTTCCTTTCAGGCTAATTTTGATGATGAGGTTTTCAATGCTGGGGCCTATGTTGAAACCAACGACCTTGACATGGAGCTTAATTGGAATGATATAATTGGGAGTGATACTTTTCCATCACTGAACTTTCATCATGGGGAGTGTAGTAGCCATGCTGAGTATTCCAAAGTATTCATCAAGGATCAGGAGCCATCAGCAGGCACTTTTGGAATTTCTCGGCCTGAAAATGACTGGCCTCTTGATATGACTGAGCAACATGGCGTGGATACAAATTCAGTGAACAACAGAGACAATGGTGAGCTGATCAATATTGGCAATCATCTGAATTTTAATGATGCATCAAATGATATGAATCTGGATCTGTTCTGGGATGCCAACGAGAATCTTCCGACTGATGGATCATTCTTGGAATACAATGATATTGCAATTGGGAATGGGAGTAGATCTACTGAGGCTGATCCTCCTGCGAATGACATTCTAGACGAGTATCTTACACTCCCTGATGATGATATTTACAAGTATATATCTTTTGATTCTCCTCAGATTCAAGAGAGTGAAAATTTTATTCCCAACCAAGGATCACCTTTCACTCGGCAGAATGTGGAGGGAGAAACTGCTGATAAAGCTGTGGTTAGTAATCATAATTCTGAATCACAAACCAGAAATGAGGCTTCTTCAGTGCAGAATACACATGAGGCAAAGTTTGCACCAGGAAGTACAAATCCACTTGTTAAGCAGGCCTATGGTTGGTTAGCCGGCATCCCTGCTGCGCCTGCACATGCTATGGAGTTTCCTGCTAAGGAGATTGCTCTTGGGCTTCATCCTGTAGCTCAGTCTTCCCATCCAGCTCATATAACTACAGGTATGATCAGCATAACAGACATTACTTTAAGAGGCAATGCGATGGATTGGACGATGGGCAAAAATGGAGGGTTTAGCACTGTAATATCCACTGGGTTTTGTCAACCGGATGTTAATTCGGATGCTTTGATACCTGTTTCTGGCAAGACTGCATTTGTGTTGTCGCATGGCTGGATTTTCCTGACTGGTTTCTCTGTTCTTATTCTTTCACTGAGTTGCAAGATCGGAAGCATCATGTATACTGGTAAATGA
>Glyma20g33390.1 sequence type=predicted peptide gene model=Glyma20g33390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARMGPGFRFHPTDEELVVFYLKRKMTGNLSRYDHIAVVDVYKLEPWDLPPLSKLKTKDLEWYFFSALDRKYGNGSRTNRATDRGYWKTTGKDRPVTHGDRTVGMKKTLVYHSGRAPHGRRTNWVMHEYKMLDEELARAGTVPDVFVVCRIFEKSGSGPKNGAKYGAPLDEKEWDVEDEQEEEEEENEQKDVAPLLVPHNAVAPPPPLSVVADNAEAHPPLTATVDNKYMVAPPPSFQANFDDEVFNAGAYVETNDLDMELNWNDIIGSDTFPSLNFHHGECSSHAEYSKVFIKDQEPSAGTFGISRPENDWPLDMTEQHGVDTNSVNNRDNGELINIGNHLNFNDASNDMNLDLFWDANENLPTDGSFLEYNDIAIGNGSRSTEADPPANDILDEYLTLPDDDIYKYISFDSPQIQESENFIPNQGSPFTRQNVEGETADKAVVSNHNSESQTRNEASSVQNTHEAKFAPGSTNPLVKQAYGWLAGIPAAPAHAMEFPAKEIALGLHPVAQSSHPAHITTGMISITDITLRGNAMDWTMGKNGGFSTVISTGFCQPDVNSDALIPVSGKTAFVLSHGWIFLTGFSVLILSLSCKIGSIMYTGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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