SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52190 | AT | Annotation by Michelle Graham. TAIR10: phosphate transporter traffic facilitator1 | chr3:19354117-19356910 REVERSE LENGTH=398 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphate ion transport | SoyBase | N/A | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0006862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide transport | SoyBase | N/A | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
| GO:0015802 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basic amino acid transport | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ion transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0771 | KOG | Prolactin regulatory element-binding protein/Protein transport protein SEC12p | JGI | ISS | |
| PTHR23284 | Panther | SEC12P-LIKE | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_Q8GYE0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SEC12-like protein 1 n=2 Tax=Arabidopsis thaliana RepID=PHF1_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DAE5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DAE5 related cluster n=1 Tax=unknown RepID=UPI000233DAE5 | SoyBase | E_val: 0 | ISS |
|
Glyma20g33180 not represented in the dataset |
Glyma20g33180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g34380 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g190300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g33180.2 sequence type=transcript gene model=Glyma20g33180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCGGAATCTTAAGCGAATATCTCCATAGTTGCTAATATGTTTTGTTTCTTCCAGCATTGTTGCATTTACTGGACCCATCTCTCCCTTCTTTCTATTAAACAAATCGCTTCAATTTTTTCAACCCTCAAAATTAATCAACTTTCATTTTTTTTATAAATCCAACCCCCTAAACATATTTTCACATTGCGTTCAAGCAACAGTTGCATCATCCTAATAAAACCCTGTGATCATATACATTCATACTCAGCAACCTTAAAACACAATATCACGTAAAAAAGAATCCAATTCACCGATCTCCGAAGAGCTCCATTTGGAAAAAGAAGCGAACTGGGTATCCAATTTTCGAACACTTTCGATGGGGAATGATGCAGGGTCACCTCAGGGTCCGGTTACGTGTGGGTCGTGGATTCGGAGGCCTGAGAATTTGAACTTGGTGGTGTTAGGAAGGTCCAGACGTGGCAATTCTTGTCCTTCTCTCTTGGAGATTTTCTCCTTCGATCCCAAGACCACTTCTCTGTCTACCTGTCCTCTGACCACTTATGTGTTGGAAGCAGAGGAAGGTGATCCTGTTGCTATTGCAGTCCACCCAAGTGGGGATGATTTTGTGTGCGCTCTCAGCAATGGTAGCTGCAAATTGTTTGAGCTGTATGGTCGTGAAACAAACATGAAGTTGTTGGCTAAGGAACTGGCTCCTCTACAGGGTATTGGTCCTCAGAAATGCATTGCTTTTAGTGTTGATGGGTCTAAATTTGCTGCTGGTGGGTTGGATGGACATCTCAGAATTATGGAGTGGCCTAGTATGCGCGTGATTTTGGATGAACCAAGAGCACACAAATCAGTTCGGGATATGGATTTTAGTCTAGACTCAGAATTTCTAGCTTCAACTTCTACTGATGGTTCAGCAAGAATCTGGAAGATTGAAGATGGTGTTCCTTTGACTACTTTGTCTCGCAACTCGGATGAAAAGATTGAATTATGTCGATTTTCCATGGATGGAACCAAACCATTTTTATTTTGCTCTGTTCAAAAAGGTGATACTTCTGTCACTGCGGTTTATGAGATTAGCACATGGAATAAAATTGGGCACAAGAGGCTGATTAGAAAGTCTGCTTCAGTAATGTCCATTAGCCATGATGGGAAATACCTTTCTCTGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAGAAAATGCAGATATACCATTATAGCAAGAGATTGCACCTGGGTACAAATATTGCATATCTGGAGTTCTGTCCCGGGGAAAGGGTTTTACTTACAACCTCAGTAGAATGGGGAGCGCTGGTCACCAAGCTGACTGTACCTAAAGATTGGAAAGAGTGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCATGGGCAAAGACCAACCAGCAAGACCAAGGTTTAAACCTGTGTTAAAAGATCCCCAGTCTTATGATGACCAAAATATTTGGGGGCCAGTAGATATGTGATCACATTAACATTCTTGATTTAGTCTTCGGTGCTGTTTTGGAAGCAGTATCAGTAGCTGTAACTGGTATCAATATTTATTTAAGCCCTTATAGAGTTAGGCACTTGACTGGTATTACAAACATTTACTTCTATTTTTTTGGGGTGAAAATTCTGAGCCAAAGGCCATGATTGGTATGTAATTTTAATAGAAACTTTAGGAATAATCAAATAGCTTCCTTAAATTTACAAGTTACACGCAAGGCTGCTTTGTAGCTATGTGATGGGATCCATTGAAGAGGCACGTCTTTGGATATCTTTCCATTTTTCTTATTTTGTTTCTTGTTTTAATGATAACCTCTTACATTGGTTTTATGCCTTTGGTTAGAGAAAAATAAAGGGGAGCCTTTGAATCAAGTTACCATACTAAGAA
>Glyma20g33180.1 sequence type=CDS gene model=Glyma20g33180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAATGATGCAGGGTCACCTCAGGGTCCGGTTACGTGTGGGTCGTGGATTCGGAGGCCTGAGAATTTGAACTTGGTGGTGTTAGGAAGGTCCAGACGTGGCAATTCTTGTCCTTCTCTCTTGGAGATTTTCTCCTTCGATCCCAAGACCACTTCTCTGTCTACCTGTCCTCTGACCACTTATGTGTTGGAAGCAGAGGAAGGTGATCCTGTTGCTATTGCAGTCCACCCAAGTGGGGATGATTTTGTGTGCGCTCTCAGCAATGGTAGCTGCAAATTGTTTGAGCTGTATGGTCGTGAAACAAACATGAAGTTGTTGGCTAAGGAACTGGCTCCTCTACAGGGTATTGGTCCTCAGAAATGCATTGCTTTTAGTGTTGATGGGTCTAAATTTGCTGCTGGTGGGTTGGATGGACATCTCAGAATTATGGAGTGGCCTAGTATGCGCGTGATTTTGGATGAACCAAGAGCACACAAATCAGTTCGGGATATGGATTTTAGTCTAGACTCAGAATTTCTAGCTTCAACTTCTACTGATGGTTCAGCAAGAATCTGGAAGATTGAAGATGGTGTTCCTTTGACTACTTTGTCTCGCAACTCGGATGAAAAGATTGAATTATGTCGATTTTCCATGGATGGAACCAAACCATTTTTATTTTGCTCTGTTCAAAAAGGTGATACTTCTGTCACTGCGGTTTATGAGATTAGCACATGGAATAAAATTGGGCACAAGAGGCTGATTAGAAAGTCTGCTTCAGTAATGTCCATTAGCCATGATGGGAAATACCTTTCTCTGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAGAAAATGCAGATATACCATTATAGCAAGAGATTGCACCTGGGTACAAATATTGCATATCTGGAGTTCTGTCCCGGGGAAAGGGTTTTACTTACAACCTCAGTAGAATGGGGAGCGCTGGTCACCAAGCTGACTGTACCTAAAGATTGGAAAGAGTGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCATGGGCAAAGACCAACCAGCAAGACCAAGGTTTAAACCTGTGTTAAAAGATCCCCAGTCTTATGATGACCAAAATATTTGGGGGCCAGTAGATATGTGA >Glyma20g33180.2 sequence type=CDS gene model=Glyma20g33180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAATGATGCAGGGTCACCTCAGGGTCCGGTTACGTGTGGGTCGTGGATTCGGAGGCCTGAGAATTTGAACTTGGTGGTGTTAGGAAGGTCCAGACGTGGCAATTCTTGTCCTTCTCTCTTGGAGATTTTCTCCTTCGATCCCAAGACCACTTCTCTGTCTACCTGTCCTCTGACCACTTATGTGTTGGAAGCAGAGGAAGGTGATCCTGTTGCTATTGCAGTCCACCCAAGTGGGGATGATTTTGTGTGCGCTCTCAGCAATGGTAGCTGCAAATTGTTTGAGCTGTATGGTCGTGAAACAAACATGAAGTTGTTGGCTAAGGAACTGGCTCCTCTACAGGGTATTGGTCCTCAGAAATGCATTGCTTTTAGTGTTGATGGGTCTAAATTTGCTGCTGGTGGGTTGGATGGACATCTCAGAATTATGGAGTGGCCTAGTATGCGCGTGATTTTGGATGAACCAAGAGCACACAAATCAGTTCGGGATATGGATTTTAGTCTAGACTCAGAATTTCTAGCTTCAACTTCTACTGATGGTTCAGCAAGAATCTGGAAGATTGAAGATGGTGTTCCTTTGACTACTTTGTCTCGCAACTCGGATGAAAAGATTGAATTATGTCGATTTTCCATGGATGGAACCAAACCATTTTTATTTTGCTCTGTTCAAAAAGGTGATACTTCTGTCACTGCGGTTTATGAGATTAGCACATGGAATAAAATTGGGCACAAGAGGCTGATTAGAAAGTCTGCTTCAGTAATGTCCATTAGCCATGATGGGAAATACCTTTCTCTGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAGAAAATGCAGATATACCATTATAGCAAGAGATTGCACCTGGGTACAAATATTGCATATCTGGAGTTCTGTCCCGGGGAAAGGGTTTTACTTACAACCTCAGTAGAATGGGGAGCGCTGGTCACCAAGCTGACTGTACCTAAAGATTGGAAAGAGTGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCATGGGCAAAGACCAACCAGCAAGACCAAGGTTTAAACCTGTGTTAAAAGATCCCCAGTCTTATGATGACCAAAATATTTGGGGGCCAGTAGATATGTGA
>Glyma20g33180.1 sequence type=predicted peptide gene model=Glyma20g33180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNDAGSPQGPVTCGSWIRRPENLNLVVLGRSRRGNSCPSLLEIFSFDPKTTSLSTCPLTTYVLEAEEGDPVAIAVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCIAFSVDGSKFAAGGLDGHLRIMEWPSMRVILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKIEDGVPLTTLSRNSDEKIELCRFSMDGTKPFLFCSVQKGDTSVTAVYEISTWNKIGHKRLIRKSASVMSISHDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIAYLEFCPGERVLLTTSVEWGALVTKLTVPKDWKEWQIYLVLLGLFLASAVAFYIFFENSDSFWNFPMGKDQPARPRFKPVLKDPQSYDDQNIWGPVDM* >Glyma20g33180.2 sequence type=predicted peptide gene model=Glyma20g33180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNDAGSPQGPVTCGSWIRRPENLNLVVLGRSRRGNSCPSLLEIFSFDPKTTSLSTCPLTTYVLEAEEGDPVAIAVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCIAFSVDGSKFAAGGLDGHLRIMEWPSMRVILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKIEDGVPLTTLSRNSDEKIELCRFSMDGTKPFLFCSVQKGDTSVTAVYEISTWNKIGHKRLIRKSASVMSISHDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIAYLEFCPGERVLLTTSVEWGALVTKLTVPKDWKEWQIYLVLLGLFLASAVAFYIFFENSDSFWNFPMGKDQPARPRFKPVLKDPQSYDDQNIWGPVDM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
