SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04500 | AT | Annotation by Michelle Graham. TAIR10: glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765 | SoyBase | E_val: 0 | ISS |
| GO:0031227 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| KOG1022 | KOG | Acetylglucosaminyltransferase EXT2/exostosin 2 | JGI | ISS | |
| PTHR11062 | Panther | EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED | JGI | ISS | |
| PTHR11062:SF2 | Panther | EXOSTOSIN-RELATED | JGI | ISS | |
| PF04616 | PFAM | Glycosyl hydrolases family 43 | JGI | ISS | |
| PF09258 | PFAM | Glycosyl transferase family 64 domain | JGI | ISS | |
| UniRef100_B9T3V5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9T3V5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DBC4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DBC4 related cluster n=1 Tax=unknown RepID=UPI000233DBC4 | SoyBase | E_val: 0 | ISS |
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Glyma20g33120 not represented in the dataset |
Glyma20g33120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g34440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g189900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g33120.3 sequence type=transcript gene model=Glyma20g33120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACCAAGGTAAGGAAAGGAAGGTCCAGTCGCACAATAATTCAAAATTACAACCTTGCCCTCGTCAAAGAAAAAAGAAGCAGAACCCGCACACAGAGAAAGAGAGAGAGAAAAAAAACGGGTTTTGTTGTGTTGGGCGAATTGTGAAATGCTGGTGACGGAGTTGCAACGTGCCACGGCGGTGTGAGATCTTCCGGCGGCACCGAGCATTTCTCCGGCGAGATGGGTTCGGGGCAGATTGTCGGCGGCGGAAACGGTGGGAGTTGTTGTGATATGAGTGTGAAATGTTCGTGTAGGTGGAGATTGGAGAACCAACAGTACTATAAGCGGTTATTTTCTTCGGGTTTTGTTTTCTTCTTCGGGTGTTTCGTTTTGTTCGGATCCATTGCCACCCTCTACGGTTGGCTCGCTTTTTCGCCTACAGTGCACACCTCACTCTCTTCTTTCGGTTGTCGTGACGACAATGAGGGTTCTTGGTCTGTTGGGGTTTTCTACGGTGACTCACCTTTCTCTCTTAAACCCATAGAAGCTGGAAATACTTTTTACCTGTTCTATGAGACGAAAAGTTCAATCACTATGCAAGGTGATATTGGAGTTTCAAAAAGTACTGATAAGGGAGCAACATGGCAACAGTTGGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTCTTTGAGCATGATGGCCAGATATATATGATGCCTGAGGGCAGCCAGAAGGGAGATCTTCGTCTCTACCGTGCAGTTAACTTTCCTTTGCAGTGGAGGTTGGAAAAGGTCGTCATGAAAAAGCCCCTTGTTGATTCTTTTGTCATCAATCATGGTGGGAGGTATTGGCTTTTTGGGTCAGATCATAGTGGTTTTGGCACCCAGAAAAATGGGCAGTTGGAGATTTGGTATAGCAATTCACTTCTTGGTCCTTGGAAACCTCACAAGAAGAATCCCATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGGGGCAGGCCATTTAAATATGAAGGAAATCATTACCGTATGGGCCAGGACTGTGGTGATACATATGGGAGAAAGTTGCGTATTTTTAAGATAGAAACTCTCACTAGTGGTGAATACAAAGAAGTTGAAGTACCCTTAGGCTTTGTTGAATCAAACAAGGGTCGAAACGCTTGGAATGGGGCTCGATACCATCACTTAGATGTGCAGCACCTTCCATCTGGTGGCTGGGTTGGTGTCATGGATGGGGATCGTGTTCCTTCTGGAGATTCAGTCCGGCGATTCACAGTTGGTTGTGCTTCTGTTGTGGTTGCTGTTATACTCATTGTACTACTGGGTGTGTTACTTGGATTTGTGAACTGTATTGTCCCTCTGAATTGGTTCATTCATAACTCTGGGAAGAGGAATTTCACTGCCTTGTCTTGGGAAAGGTCAAATATGTTCTCTTCAAGAGTAAGACGGTTTTGCAGCCGCCTGAACCGAGCCCCAACATTTCTCCGTGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGTTTATTCTTGCCATAATATTTGCTGTGGGGGTTGGATTGATGTGCATAGGAGTGAAAAATATTTATGGTGGTAATGGTTCGGAAGAGCCTTACCCGTTGAAAGGGCAATATTCCCAATTCACCTTACTAACAATGACCTATGATGCTCGACTTTGGAATTTGAAGATGTATGTGAAACATTACTCAAGATGCTCTTCTGTGCGGGAGATAGTGGTGGTGTGGAACAAGGGAGTCCCTCCAAAATTGAGTGATCTAGATTCTGCAGTACCAGTAAGGATCAGGGAAGAGAAAAATAACTCTCTGAATAATCGGTTCAGGGCCGATCCATTGATAAAGACACGAGCAGTCCTTGAGCTTGATGACGATATTATGATGCCATGCGATGATATCGAGCGAGGTTTTAATGTGTGGCGTCAGCACCCAGATCGGATTGTTGGATTCTATCCTCGGCTCATTGATGGAAGCCTGTTAAAATACAGGGGAGAAAAATACGCTCGGATGCATAAGGGGTACAACATGATTCTTACTGGTGCAGCTTTTATTGATTCTCAAGTGGCTTTCAAGAGGTACGGGAGCAAGGAAGCCGAGAAAGGAAGGGAACTGGTGGACAGGATTTTTAACTGTGAAGACGTGCTCTTAAATTATTTGTATGCAAATGCAAGTTCATCATCAAGGACTGTTGATTATGTGAAACCAGCTTGGGCAATTGACACTTCAAAGTTTTCTGGTGCAGCGATTAGCCGAAACACGAAAGTACATTATCAGTTGAGAAGCCAGTGCCTGATGAAATTTTCAGAGATGTATGGAAGTTTAGCTGGTCGTAAATGGGGATTTGACAGTAGAAAAGATGGTTGGGATGTATAGTAGGGAGTTTTTGTTATAGGTAGGTCGTTGCCAACTTTTGTATTTTTCATCTTTGCGGGTATAAAGTTTAGTCTTCTTTGTCCATACTTGTACCCCACTGTGAATCTTATTTTAGGGGGTTTTCAATAGAATGAATGTCTGCAAGCAACATGTAAATTGGTTCTATAATGGCCTTTTCATGTTATATTTTTTAATTTGTGCCTCCAACCCCCCGGGGGTGGTTTGTGATATGGTGTTTTTAGGAGGGAAGGAAAGAAACACGGAGAAAGAATGATTCAAGAAGAAGGGTGAGTGAGACAAATGGAAAATAGGACTACAACTGTTTCCTAAAGACATTTCTTTCTTAGGATCTGCTATTCTGATCCTGGCATTGATTCTAATTGATTTTCATTGCTTCTTGACTATTTCTAAGCCTTTAAAGGGTGGCTTTCTGTTGTTCTTAGATTGACTTTGGTTTTTGGTTTAAGGGGGGATGAATATGAACTAACACTTGGGCAATGGACAAAATAGACCAGAATGT
>Glyma20g33120.2 sequence type=CDS gene model=Glyma20g33120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCGGGGCAGATTGTCGGCGGCGGAAACGGTGGGAGTTGTTGTGATATGAGTGTGAAATGTTCGTGTAGGTGGAGATTGGAGAACCAACAGTACTATAAGCGGTTATTTTCTTCGGGTTTTGTTTTCTTCTTCGGGTGTTTCGTTTTGTTCGGATCCATTGCCACCCTCTACGGTTGGCTCGCTTTTTCGCCTACAGTGCACACCTCACTCTCTTCTTTCGGTTGTCGTGACGACAATGAGGGTTCTTGGTCTGTTGGGGTTTTCTACGGTGACTCACCTTTCTCTCTTAAACCCATAGAAGCTGCAAATGTATCAAACGATGAGAGTGCTGCTTGGCCTGTCGCCAATCCTGTGGTGACGTGTGCTTCAGTTTCTGATGCTGGTTACCCCAGTAATTTTGTTGCTGACCCTTTTCTTTTTATTCAGGGAAATACTTTTTACCTGTTCTATGAGACGAAAAGTTCAATCACTATGCAAGGTGATATTGGAGTTTCAAAAAGTACTGATAAGGGAGCAACATGGCAACAGTTGGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTCTTTGAGCATGATGGCCAGATATATATGATGCCTGAGGGCAGCCAGAAGGGAGATCTTCGTCTCTACCGTGCAGTTAACTTTCCTTTGCAGTGGAGGTTGGAAAAGGTCGTCATGAAAAAGCCCCTTGTTGATTCTTTTGTCATCAATCATGGTGGGAGGTATTGGCTTTTTGGGTCAGATCATAGTGGTTTTGGCACCCAGAAAAATGGGCAGTTGGAGATTTGGTATAGCAATTCACTTCTTGGTCCTTGGAAACCTCACAAGAAGAATCCCATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGGGGCAGGCCATTTAAATATGAAGGAAATCATTACCGTATGGGCCAGGACTGTGGTGATACATATGGGAGAAAGTTGCGTATTTTTAAGATAGAAACTCTCACTAGTGGTGAATACAAAGAAGTTGAAGTACCCTTAGGCTTTGTTGAATCAAACAAGGGTCGAAACGCTTGGAATGGGGCTCGATACCATCACTTAGATGTGCAGCACCTTCCATCTGGTGGCTGGGTTGGTGTCATGGATGGGGATCGTGTTCCTTCTGGAGATTCAGTCCGGCGATTCACAGTTGGTTGTGCTTCTGTTGTGGTTGCTGTTATACTCATTGTACTACTGGGTGTGTTACTTGGATTTGTGAACTGTATTGTCCCTCTGAATTGGTTCATTCATAACTCTGGGAAGAGGAATTTCACTGCCTTGTCTTGGGAAAGGTCAAATATGTTCTCTTCAAGAGTAAGACGGTTTTGCAGCCGCCTGAACCGAGCCCCAACATTTCTCCGTGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGTTTATTCTTGCCATAATATTTGCTGTGGGGGTTGGATTGATGTGCATAGGAGTGAAAAATATTTATGGTGGTAATGGTTCGGAAGAGCCTTACCCGTTGAAAGGGCAATATTCCCAATTCACCTTACTAACAATGACCTATGATGCTCGACTTTGGAATTTGAAGATGTATGTGAAACATTACTCAAGATGCTCTTCTGTGCGGGAGATAGTGGTGGTGTGGAACAAGGGAGTCCCTCCAAAATTGAGTGATCTAGATTCTGCAGTACCAGTAAGGATCAGGGAAGAGAAAAATAACTCTCTGAATAATCGGTTCAGGGCCGATCCATTGATAAAGACACGAGCAGTCCTTGAGCTTGATGACGATATTATGATGCCATGCGATGATATCGAGCGAGGTTTTAATGTGTGGCGTCAGCACCCAGATCGGATTGTTGGATTCTATCCTCGGCTCATTGATGGAAGCCTGTTAAAATACAGGGGAGAAAAATACGCTCGGATGCATAAGGGGTACAACATGATTCTTACTGGTGCAGCTTTTATTGATTCTCAAGTGGCTTTCAAGAGGTACGGGAGCAAGGAAGCCGAGAAAGGAAGGGAACTGGTGGACAGGATTTTTAACTGTGAAGACGTGCTCTTAAATTATTTGTATGCAAATGCAAGTTCATCATCAAGGACTGTTGATTATGTGAAACCAGCTTGGGCAATTGACACTTCAAAGTTTTCTGGTGCAGCGATTAGCCGAAACACGAAAGTACATTATCAGTTGAGAAGCCAGTGCCTGATGAAATTTTCAGAGATGTATGGAAGTTTAGCTGGTCGTAAATGGGGATTTGACAGTAGAAAAGATGGTTGGGATGTATAG >Glyma20g33120.3 sequence type=CDS gene model=Glyma20g33120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCGGGGCAGATTGTCGGCGGCGGAAACGGTGGGAGTTGTTGTGATATGAGTGTGAAATGTTCGTGTAGGTGGAGATTGGAGAACCAACAGTACTATAAGCGGTTATTTTCTTCGGGTTTTGTTTTCTTCTTCGGGTGTTTCGTTTTGTTCGGATCCATTGCCACCCTCTACGGTTGGCTCGCTTTTTCGCCTACAGTGCACACCTCACTCTCTTCTTTCGGTTGTCGTGACGACAATGAGGGTTCTTGGTCTGTTGGGGTTTTCTACGGTGACTCACCTTTCTCTCTTAAACCCATAGAAGCTGGAAATACTTTTTACCTGTTCTATGAGACGAAAAGTTCAATCACTATGCAAGGTGATATTGGAGTTTCAAAAAGTACTGATAAGGGAGCAACATGGCAACAGTTGGGAATTGCCTTGAATGAGGATTGGCATCTTTCTTATCCTTATGTCTTTGAGCATGATGGCCAGATATATATGATGCCTGAGGGCAGCCAGAAGGGAGATCTTCGTCTCTACCGTGCAGTTAACTTTCCTTTGCAGTGGAGGTTGGAAAAGGTCGTCATGAAAAAGCCCCTTGTTGATTCTTTTGTCATCAATCATGGTGGGAGGTATTGGCTTTTTGGGTCAGATCATAGTGGTTTTGGCACCCAGAAAAATGGGCAGTTGGAGATTTGGTATAGCAATTCACTTCTTGGTCCTTGGAAACCTCACAAGAAGAATCCCATTTATAACATTGACAAGAGCTTGGGAGCTCGCAATGGGGGCAGGCCATTTAAATATGAAGGAAATCATTACCGTATGGGCCAGGACTGTGGTGATACATATGGGAGAAAGTTGCGTATTTTTAAGATAGAAACTCTCACTAGTGGTGAATACAAAGAAGTTGAAGTACCCTTAGGCTTTGTTGAATCAAACAAGGGTCGAAACGCTTGGAATGGGGCTCGATACCATCACTTAGATGTGCAGCACCTTCCATCTGGTGGCTGGGTTGGTGTCATGGATGGGGATCGTGTTCCTTCTGGAGATTCAGTCCGGCGATTCACAGTTGGTTGTGCTTCTGTTGTGGTTGCTGTTATACTCATTGTACTACTGGGTGTGTTACTTGGATTTGTGAACTGTATTGTCCCTCTGAATTGGTTCATTCATAACTCTGGGAAGAGGAATTTCACTGCCTTGTCTTGGGAAAGGTCAAATATGTTCTCTTCAAGAGTAAGACGGTTTTGCAGCCGCCTGAACCGAGCCCCAACATTTCTCCGTGGTAAGATAAAGCATAATGCTTGTGCTAGGAGGTTTATTCTTGCCATAATATTTGCTGTGGGGGTTGGATTGATGTGCATAGGAGTGAAAAATATTTATGGTGGTAATGGTTCGGAAGAGCCTTACCCGTTGAAAGGGCAATATTCCCAATTCACCTTACTAACAATGACCTATGATGCTCGACTTTGGAATTTGAAGATGTATGTGAAACATTACTCAAGATGCTCTTCTGTGCGGGAGATAGTGGTGGTGTGGAACAAGGGAGTCCCTCCAAAATTGAGTGATCTAGATTCTGCAGTACCAGTAAGGATCAGGGAAGAGAAAAATAACTCTCTGAATAATCGGTTCAGGGCCGATCCATTGATAAAGACACGAGCAGTCCTTGAGCTTGATGACGATATTATGATGCCATGCGATGATATCGAGCGAGGTTTTAATGTGTGGCGTCAGCACCCAGATCGGATTGTTGGATTCTATCCTCGGCTCATTGATGGAAGCCTGTTAAAATACAGGGGAGAAAAATACGCTCGGATGCATAAGGGGTACAACATGATTCTTACTGGTGCAGCTTTTATTGATTCTCAAGTGGCTTTCAAGAGGTACGGGAGCAAGGAAGCCGAGAAAGGAAGGGAACTGGTGGACAGGATTTTTAACTGTGAAGACGTGCTCTTAAATTATTTGTATGCAAATGCAAGTTCATCATCAAGGACTGTTGATTATGTGAAACCAGCTTGGGCAATTGACACTTCAAAGTTTTCTGGTGCAGCGATTAGCCGAAACACGAAAGTACATTATCAGTTGAGAAGCCAGTGCCTGATGAAATTTTCAGAGATGTATGGAAGTTTAGCTGGTCGTAAATGGGGATTTGACAGTAGAAAAGATGGTTGGGATGTATAG
>Glyma20g33120.2 sequence type=predicted peptide gene model=Glyma20g33120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSGQIVGGGNGGSCCDMSVKCSCRWRLENQQYYKRLFSSGFVFFFGCFVLFGSIATLYGWLAFSPTVHTSLSSFGCRDDNEGSWSVGVFYGDSPFSLKPIEAANVSNDESAAWPVANPVVTCASVSDAGYPSNFVADPFLFIQGNTFYLFYETKSSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVFEHDGQIYMMPEGSQKGDLRLYRAVNFPLQWRLEKVVMKKPLVDSFVINHGGRYWLFGSDHSGFGTQKNGQLEIWYSNSLLGPWKPHKKNPIYNIDKSLGARNGGRPFKYEGNHYRMGQDCGDTYGRKLRIFKIETLTSGEYKEVEVPLGFVESNKGRNAWNGARYHHLDVQHLPSGGWVGVMDGDRVPSGDSVRRFTVGCASVVVAVILIVLLGVLLGFVNCIVPLNWFIHNSGKRNFTALSWERSNMFSSRVRRFCSRLNRAPTFLRGKIKHNACARRFILAIIFAVGVGLMCIGVKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVREIVVVWNKGVPPKLSDLDSAVPVRIREEKNNSLNNRFRADPLIKTRAVLELDDDIMMPCDDIERGFNVWRQHPDRIVGFYPRLIDGSLLKYRGEKYARMHKGYNMILTGAAFIDSQVAFKRYGSKEAEKGRELVDRIFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSQCLMKFSEMYGSLAGRKWGFDSRKDGWDV* >Glyma20g33120.3 sequence type=predicted peptide gene model=Glyma20g33120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSGQIVGGGNGGSCCDMSVKCSCRWRLENQQYYKRLFSSGFVFFFGCFVLFGSIATLYGWLAFSPTVHTSLSSFGCRDDNEGSWSVGVFYGDSPFSLKPIEAGNTFYLFYETKSSITMQGDIGVSKSTDKGATWQQLGIALNEDWHLSYPYVFEHDGQIYMMPEGSQKGDLRLYRAVNFPLQWRLEKVVMKKPLVDSFVINHGGRYWLFGSDHSGFGTQKNGQLEIWYSNSLLGPWKPHKKNPIYNIDKSLGARNGGRPFKYEGNHYRMGQDCGDTYGRKLRIFKIETLTSGEYKEVEVPLGFVESNKGRNAWNGARYHHLDVQHLPSGGWVGVMDGDRVPSGDSVRRFTVGCASVVVAVILIVLLGVLLGFVNCIVPLNWFIHNSGKRNFTALSWERSNMFSSRVRRFCSRLNRAPTFLRGKIKHNACARRFILAIIFAVGVGLMCIGVKNIYGGNGSEEPYPLKGQYSQFTLLTMTYDARLWNLKMYVKHYSRCSSVREIVVVWNKGVPPKLSDLDSAVPVRIREEKNNSLNNRFRADPLIKTRAVLELDDDIMMPCDDIERGFNVWRQHPDRIVGFYPRLIDGSLLKYRGEKYARMHKGYNMILTGAAFIDSQVAFKRYGSKEAEKGRELVDRIFNCEDVLLNYLYANASSSSRTVDYVKPAWAIDTSKFSGAAISRNTKVHYQLRSQCLMKFSEMYGSLAGRKWGFDSRKDGWDV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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