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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04560 | AT | Annotation by Michelle Graham. TAIR10: HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006349 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0043078 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: polar nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003906 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity | SoyBase | N/A | ISS |
| GO:0004519 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endonuclease activity | SoyBase | N/A | ISS |
| GO:0019104 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA N-glycosylase activity | SoyBase | N/A | ISS |
| GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
| PTHR10359 | Panther | A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III | JGI | ISS | |
| PTHR10359:SF3 | Panther | A/G-SPECIFIC ADENINE GLYCOSYLASE | JGI | ISS | |
| PF00730 | PFAM | HhH-GPD superfamily base excision DNA repair protein | JGI | ISS | |
| UniRef100_F6KFZ1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Gossypium hirsutum RepID=F6KFZ1_GOSHI | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DBC0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DBC0 related cluster n=1 Tax=unknown RepID=UPI000233DBC0 | SoyBase | E_val: 0 | ISS |
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Glyma20g32960 not represented in the dataset |
Glyma20g32960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g34595 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g188300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g32960.2 sequence type=CDS gene model=Glyma20g32960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGAGCAACCACATAACAGGCTTTCAATGATGAACTTTGGAAAACAACTTTTAGGCCAAGATGAGAGACAACTTGAAATGAACAATACATGGGTACCCATCCCCACTGAGAAGCTCGTTCAACTAACATCTAATACACCATCAGACTGGCCAGTGAACCAAATGAGAAGGCCAAATTATCAAGAAATTCGTCTACCTGGAAGTGATTACATGAAAGAGAAGTCGCTGCATTATTACCCAGGACCAAATCAGAATCTCCCTCTGATAGGACAAACAAGTCAAACTGGAGAGAACAAAACATTTGATGGCCACTTGATGAATAGAAACAGTGTTCTAGATCACATTCCAGGATCCTACACTCAGCCATGGCACTATGAGAGCAATGGATCAAACAGTAATACCTTGGAACAACTGCTCAAGAAGAACATATCTAATATAGATTCTGCTAACAGGAATTTGGATGCGAACAATAACATGGCAGCAAGAAATCCATTGCTATCAATGTTTTATCCTCAGGCTAGCAGCAATGTGAGTGATCCCTATGCAGGTGTACAACGAGGCAATATTCATTCAGCTTCAGACATTGTGTTCAAAGAAGCAAATAGACTTCTGTTTCCAAATAAGAATTCTGAAATTGATGGCAGTAACTCAAACAGCTTGCTCAACAATGACATTCATTGTTCAGTCCCAAACCAACTGGAGGGCTTCTTCTCTGAGATAACCTATGGTGATTCTTACCACAATTATAATCTGAACTATGTGCCAATAGCTGAAGCTGGTGTCACTGCTAGTTTTACCAACTCTCTCCAATCGGTACCAAAAATGATGGATCAACTCAAATTTGTGGACAACCAGTTTTTTACAATACCAGATTACATGATAGCTGAAAGCACAAGTCAGGAGAAAGACAAACAAAAAACCTCAGTTTCTGCAACAGAGAATGAATTTCAGGAACATTGCGTTGGGCTTCTACAGCAAATTGTTGATTCATCACCTGCAGCAATTTCTACAACATATGGGGATCAAAAGGGTTCTGACAACATCTGTGGCAAGGGAAGTGACCTGGGTTTTGACCTGAACAAGACACCTGAGCAGAAAGCACCCCAACGAAGAAAGCATAGACCAAAAGTAATTAAAGAGGCCAAGCCGAAAAGCACTCGAAAGCCTGCAACTCAAAAGACACAGATGAAGGAGAATCCGCACAAAAAGAGGAAGTATGTCCGAAAAACTGCAGCAACACCACAGACCAATGTTACAGAAGAAAGTGTTGATTCTATTGTTGCAACAAAAAAATCCTGCAGAAGAGCTCTAAATTTTGACTTGGAACATAATAAATATGCAAGCCAAAGCACAATAAGTTGCCAGCAGGAGATTGACCATAGAAATGAGAAAGCTTTCAATACCACTTCAGACCACAAGGCCAAAGAACCAAAAAACACAGATGATAATACACTTCTACTGCATGAGAAAATGAGAAAGCTTTCAATACCACTTCAGACCACAAGGCCAAAAGAACCAAAAAACACAGATGATAATACACTTCTACTGCATGAAAAGCAAGCTAATAATTTCCAGTCAGAAAGAAAATTAATCACAGCCTTGTCAGAAACTACAGAAGAGCCACAGATAGCAAAATTTCCTGCCACTGAGGAAGGTCCAGCTCTGGAAAATTCTGATTTGTGCCAGGAAGGAAATAATGGAAGTAGGCATCAATATATTCAAACAAAGGAAATTGACAACATCCTCTATCAATCAGAAACATGTTTTGAAAACTCTCAGAAGACCGGGGAACCAATTTGTCAGAATACCCTTCAGTTGGTGCCTAACATCCTCTCCAATTCCATTGAAGCAGCAAAGGGTTCCAAGAGAAAATATCGCAAAAGAACTCAGAAGCAACATGACTCGGCCACAAATTCACATGATACTTCCTTGTGCCAAGAGACTTTACAAGCAAATGAAAATTTCAGAGGTGCAACTCCTGCCGAAGATGTCATTAAAAAACAGAAGATTAAAAAAACTCAAAATAGACGCAATGCAAAAGTCAGTGGAAGGTCTTCCAGCCAAATAATGTCTAAAGAGAATCCCCAGAACGCAAGAACAAAAGACAAAAATGGATTTCAAACACAGTCTAATGAAGAAATACCAGATATATGTATTGAAAGTAATAGATTTGTGGAGCAGCAAAACAATGGAGCCAGCACTGGTGAATGCTTTGCTATCTCAGAGGAACCACACCAGATATACTCTAATCTGATAGATGAGATAATTTGTCAACTGAATGATCTCAAACTTGGGGAGAGCAACATGACAGAGATGGAAGGACAAAAGGCCCTAGTCCCATATAATGGAGATCGTTCAGTTGTACCCTATCAGGAGTTTGAATTACTTAAAAAACATAAACCAAGGCCTAAAGTGGATCTTGATGCAGAAACAGAGAGAACCTGGAAACTATTGATGGGCAAAGGAGGAAGTGAAGGCCTTGAAGGAACTGACAAGGAAAAAGAGAAGTGGTGGGACGAAGAAAGAAATGTTTTTCACGGACGAGTTGATTCCTTCATTGCACGGATGCATCTTATTCAAGGAGATAGACGCTTTTCAAAGTGGAAAGGATCTGTTGTTGACTCGGTGATAGGTGTTTTCCTCACTCAGAATGTTTCAGACCATCTTTCAAGCTCTGCCTTTATGTCTCTAGCATCAAGGTTTCCTCTTCAGTCAAAAAGCAGCAAGAAATCATATGATGTTGACACAAACACATTGCTTAAAGAAGCAGGACTCTGCATAGTAAATCCAGCTGATACAATAACACCATATGGATCTGGGACATTAAATCAACCAACCTATCATCTTTGCTTTGAGACACCCCATCATGCAAGAGAGCTTTGGAGAGACAGTGAAACTTCAAGGCCAAAAGGGAGCCTAATAAAGCCAAATAATCAGAGCTCAGAGGAAGAATTTTTATCACCACAAGATTCTCTTGATTCCTCAATTACTCAAGATGCCAGAAATAGATCTTCCTCAGGATCCAATTCAGAATCAGAAGGACTGGACTGCAGGTGTGAACATAGAGAGACTCAATTTTTAACTGCAATTAATTCTTTACAGGTAGGAAAGACCACTATGTTCCAGGAATTTTACAACAGTATAAATGGAGTGTCACTGTTTGAGGAGAGAAATAAAGATGGACAGCTGCATCCAGAAGAATATGTGAAACAAAATTGTAGCATAGGCAGAAACAGTAGTCCCAATATCTGCTCAGCATTTAGTCATCCTAACAACTTTGCTTATCCACCAAAGCAACTACCTGTAGTTCCTTCAACTGACTATAGGCTATATTACTCAGACACACAAGGGCTGAAGACTTTTCAAATGAATGGTGGAAAGTTTTCTTGGACTGAAACTGTTTCTGTTCACAGTGAGTTACAGGACAACAATTCTGGCAATAGGAAAGTGGGAGATAGTGCAGATAAACCCACAGAGATGCAATATGCAAATGGAACACTAGGGTCTCCAGAGATACCAACAATTGACCCTTATGGACCATTAAGCAAGTATTTAGTCCTTCCACATGATACTTCTCAATTTGGATCTCATACAAATTACAATCAACCTTCACCTAATCATCATCTTGTAGGTCAGAAATCCTTAGAATCAGAAAGTAGGGAATTTACAAACTCATTAAATACGTCTCATATATTGGACAGATGTCAAGATGATGTAGTTAAGGATAGCGGCAATATTCCTAAGCATGCAGAAGGTCTTGACAGTGAAAAAATATCTGCAGCAAACAGCCAGGGATGCTCAGAAAATAGTAGGGCTGAATCAAATCCTTTGAAGCAAGTTTATTCTCCCAACTCTATCGATAAAAAGAGCAAAATCAAGGTTTCAAAAGAAAGGAAAGCAAAACCTGAGACTGAGAAAAAGCATGCAAGTGACTGGGACAAACTAAGAAAGGAGGTACAGATAAATAGAATAGAGAAAGAAAGAAGCACGGATACAATGGATTCACTGGACTATGAAGCAATAAGATGTGCCTCTGTTAAAGAGATATCTAAAACCATTAAAGAGCGAGGGATGAACAACATGCTAGCAGAACGAATCAAAGAATTCCTGAACAGATTGGTTACAGAACATGGAAGCATTGATCTTGAATGGTTAAGGCATGTTCCCCAAGATAAAGCAAAGGACTATCTGCTTAGCTTTCGAGGATTGGGGTTAAAAAGTGTGGAATGTGTACGGCTTCTGACACTTCATCATATTGCTTTCCCAGTTGACACCAATGTTGGAAGGATAGCTGTTAGACTTGGATGGGTCCCTCTCCAACCACTTCCTGAAGCACTTCAGTTACACCTCCTTGAACTGTATCCAGTGCTGGAAACAGTTCAGAAGTATCTCTGGCCCAGATTGTGTAAACTCGACCAAAGAACCTTGTATGAACTGCACTACCAGATGATTACATTTGGGAAGGTTTTCTGCACAAAGAAAAAACCAAATTGCAATGCATGCCCAATGCGAGCAGAGTGCAGGCACTTTGCAAGTGCTTTTGCAAGTGCACGGCTTGCCTTGCCTGGACCAGAAGAGAAGCGCATCGTAAGTATGCATGTTCCCATTGCAACTGAGAGAAACTATTTTGTCAATGAGAACCCCATGGTCCTACCTCTCCTTGAGAACAACTTGAGCAGACAAGTAAATCCTGAAAGTTGGCAGTGTGAACCAATCATTGAAGAACCAGCAACACCAGAAAGAGAGTGGAAAGAGGCAGAAGAAAGTGACATGGAGGACTTTTTAAAGGTGGATTCTGATGAAATTCTTTCCATTGGCCTCAATGCCAAAGAGTCAACAGTGAATGTACAGAACCACTTGCAAGAATACAAGGAGCATAATGAAGGTGACATGTCTAAGGCACTTGTGGCCTTGAATCCAGAGTCTGCTTCTATCCCTACACCAAAACTGAAGAACGTCAGTCGGCTAAGAACTGAACACCAAGTATATGAACTTCCAGATTCACATCCTCTCTTGGAAAAGATGGATAAACGGGAACCTGATGACCCAAGCCCATATCTTCTTGCAATATGGACACCAGGTGAGACTCCAAATTCTGTTGAACCACCAGAAAGAAGATGTGAATCCCAAGACTCAGCCAACCTGTGCAATGATAGCACATGTTTTTCATGCAACAGCATTAGGGAAGCCAATTCACAAACAGTTAGAGGAACAATTCTGATACCTTGTAGGACAGCAACTAGGGGAAGCTTTCCACTGAATGGAACTTACTTTCAAGTTAATGAGCTATTTGCGGATCATGCATCAAGCGTTCAACCTATTGATATTCCTAGGGAATGGATATGGAATTTGCCAAGGAGGACAGCATACTTTGGGACCTCTGTATCATCTATTTTCAAAGGCCTTTCCACCCAACAAATTCAGCATTGCTTTTGGAGAGGATTTGTTTGTGTCAGGGGATTTGATCAAAAGGAACGTGCACCACGACCTCTTCAGGCCAGATTGCATTTTTCAGCAAGCAGGTTAGCAAAGGCAGAAAAATGA
>Glyma20g32960.2 sequence type=predicted peptide gene model=Glyma20g32960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEQPHNRLSMMNFGKQLLGQDERQLEMNNTWVPIPTEKLVQLTSNTPSDWPVNQMRRPNYQEIRLPGSDYMKEKSLHYYPGPNQNLPLIGQTSQTGENKTFDGHLMNRNSVLDHIPGSYTQPWHYESNGSNSNTLEQLLKKNISNIDSANRNLDANNNMAARNPLLSMFYPQASSNVSDPYAGVQRGNIHSASDIVFKEANRLLFPNKNSEIDGSNSNSLLNNDIHCSVPNQLEGFFSEITYGDSYHNYNLNYVPIAEAGVTASFTNSLQSVPKMMDQLKFVDNQFFTIPDYMIAESTSQEKDKQKTSVSATENEFQEHCVGLLQQIVDSSPAAISTTYGDQKGSDNICGKGSDLGFDLNKTPEQKAPQRRKHRPKVIKEAKPKSTRKPATQKTQMKENPHKKRKYVRKTAATPQTNVTEESVDSIVATKKSCRRALNFDLEHNKYASQSTISCQQEIDHRNEKAFNTTSDHKAKEPKNTDDNTLLLHEKMRKLSIPLQTTRPKEPKNTDDNTLLLHEKQANNFQSERKLITALSETTEEPQIAKFPATEEGPALENSDLCQEGNNGSRHQYIQTKEIDNILYQSETCFENSQKTGEPICQNTLQLVPNILSNSIEAAKGSKRKYRKRTQKQHDSATNSHDTSLCQETLQANENFRGATPAEDVIKKQKIKKTQNRRNAKVSGRSSSQIMSKENPQNARTKDKNGFQTQSNEEIPDICIESNRFVEQQNNGASTGECFAISEEPHQIYSNLIDEIICQLNDLKLGESNMTEMEGQKALVPYNGDRSVVPYQEFELLKKHKPRPKVDLDAETERTWKLLMGKGGSEGLEGTDKEKEKWWDEERNVFHGRVDSFIARMHLIQGDRRFSKWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLASRFPLQSKSSKKSYDVDTNTLLKEAGLCIVNPADTITPYGSGTLNQPTYHLCFETPHHARELWRDSETSRPKGSLIKPNNQSSEEEFLSPQDSLDSSITQDARNRSSSGSNSESEGLDCRCEHRETQFLTAINSLQVGKTTMFQEFYNSINGVSLFEERNKDGQLHPEEYVKQNCSIGRNSSPNICSAFSHPNNFAYPPKQLPVVPSTDYRLYYSDTQGLKTFQMNGGKFSWTETVSVHSELQDNNSGNRKVGDSADKPTEMQYANGTLGSPEIPTIDPYGPLSKYLVLPHDTSQFGSHTNYNQPSPNHHLVGQKSLESESREFTNSLNTSHILDRCQDDVVKDSGNIPKHAEGLDSEKISAANSQGCSENSRAESNPLKQVYSPNSIDKKSKIKVSKERKAKPETEKKHASDWDKLRKEVQINRIEKERSTDTMDSLDYEAIRCASVKEISKTIKERGMNNMLAERIKEFLNRLVTEHGSIDLEWLRHVPQDKAKDYLLSFRGLGLKSVECVRLLTLHHIAFPVDTNVGRIAVRLGWVPLQPLPEALQLHLLELYPVLETVQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKKKPNCNACPMRAECRHFASAFASARLALPGPEEKRIVSMHVPIATERNYFVNENPMVLPLLENNLSRQVNPESWQCEPIIEEPATPEREWKEAEESDMEDFLKVDSDEILSIGLNAKESTVNVQNHLQEYKEHNEGDMSKALVALNPESASIPTPKLKNVSRLRTEHQVYELPDSHPLLEKMDKREPDDPSPYLLAIWTPGETPNSVEPPERRCESQDSANLCNDSTCFSCNSIREANSQTVRGTILIPCRTATRGSFPLNGTYFQVNELFADHASSVQPIDIPREWIWNLPRRTAYFGTSVSSIFKGLSTQQIQHCFWRGFVCVRGFDQKERAPRPLQARLHFSASRLAKAEK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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