Glyma20g32940 - SoyBase

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Report for Sequence Feature Glyma20g32940

Feature Type:	gene_model
Chromosome:	Gm20
Start:	41546228
stop:	41549157
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g32940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03680	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr5:957858-960760 FORWARD LENGTH=591	SoyBase	E_val: 1.00E-85	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0046621	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of organ growth	SoyBase	N/A	ISS
GO:0048438	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral whorl development	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0048441	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal development	SoyBase	N/A	ISS
GO:0048442	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal development	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0048498	GO-bp	Annotation by Michelle Graham. GO Biological Process: establishment of petal orientation	SoyBase	N/A	ISS
GO:0048519	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process	SoyBase	N/A	ISS
GO:0090428	GO-bp	Annotation by Michelle Graham. GO Biological Process: perianth development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI		ISS
UniRef100_B9SY13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SY13_RICCO	SoyBase	E_val: 2.00E-128	ISS
UniRef100_UPI000233DBBF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DBBF related cluster n=1 Tax=unknown RepID=UPI000233DBBF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g32940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g32940 not represented in the dataset	Glyma20g32940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g32940

Paralog	Evidence	Comments
Glyma10g34610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g32940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g188100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g32940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g32940

Limit To All Plant Sequences

>Glyma20g32940.1   sequence type=CDS   gene model=Glyma20g32940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGATCCTTATGGGCTACCGGAGGATCTCCGGCGGCTTATACCAGCCAGAAGTACCCATTTGAACCCTTCAGACACACACCTAATTGAACCACTTTGTGTTCACCATGGTCTCAGTAGTGCTGTTGCTGCTGCTACTGCTAGTGCTACTCCACCCATCACCTATGACGCCAACATGGTTGGGGACGTTTTCTTCCCTCGTGGTTTCACTCATCACTTTGCTCATCACCATGACTATTCTTCTTCCTCTGGCGTAAACCCCGTTGCTACTACTGCTACTGCTACTGCTACTACTACTGTCTCGGATCATGCATTCTGCAGCATGGAAAGTGCAGAGAAAGGGTGGTTTGGGTTTGATTCCGGGAACAACAGGTGGCCTAGACAGGAGACCCTTTCTCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAACAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAATTTGAGAATTTGTACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCTAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTAGAAGCAATATGTGGAGATCAAGCAAATAACACTCATGCTCATGCCTCAACTTCAGATAAAACCCATCGTGCTGGTGGAAACACTGCTGCTACTATTCAAAAACAAACCTTCACAACCAACCAAGACCACAATAATGGTGATTCTAACAATAACCCCAAATGCTCAGAGAGCCTCAGCATCTCAAATTCATCTCAATTCGAGACATCCTCATCAGAGAACAACGATGAGGATCTTTCAGCTATTGCATTCATGATGAAGCAGTCAAGGGATGAGAAGCAGAAAGGGTTGGATCATACTCATAGGCCAAGTGATCATAGGAGGGTGAGAAAAAGCTGGAGAACAAAAGTGGAGGAGATAGTGGATTCCCACATGAGGAAGATCATACAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAGCAAAGAGAGCAAGAGATGGCATCTAGGGAGGAAGAAAGGAAGAGAAAAGAGTCAATGTGGTTTGACCAACAGGTGCATGAACTGTGGGCCAAAGAGAAAGCATGGGTTGAGGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACACATTGGGATAGGGATAGGACTTGAAGCATTGCCATTGGTCGAAGAAGAATCACCGAATAAGAATAAGAGCCAGGGAAGTATTGATGCCAATGAGTTTCCCTCTGAGGGTGTTGATCCTGGTAGAAGTAGTAGTAGTAGGTGGACAGAAATGGAGATTTCAAATTTGATGCAGCTAAGGACTAGTTTTGAGCAAAGATTCAGAGAAAATAATAATGGGTACATGGAGAATGGGGTTTGGGATGAAATAGCAGCAAAAATGGCTTGTTTGGGGTTTGATAGGAGTGCAAGTGAGTGCAAGCAAATATGGGAAGAGATCAGCATCTCTCTCAGAAGGACAGTGGATGAGTGTGATGATGGTGCAAAAAGAAGGCCTTGGTATTTGGGACTTAAGCTGACGGATGATGATCTTTGA

Predicted protein sequences of Glyma20g32940

Limit To All Plant Sequences

>Glyma20g32940.1   sequence type=predicted peptide   gene model=Glyma20g32940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDPYGLPEDLRRLIPARSTHLNPSDTHLIEPLCVHHGLSSAVAAATASATPPITYDANMVGDVFFPRGFTHHFAHHHDYSSSSGVNPVATTATATATTTVSDHAFCSMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANNTHAHASTSDKTHRAGGNTAATIQKQTFTTNQDHNNGDSNNNPKCSESLSISNSSQFETSSSENNDEDLSAIAFMMKQSRDEKQKGLDHTHRPSDHRRVRKSWRTKVEEIVDSHMRKIIQTQDAWMERMLSVVEQREQEMASREEERKRKESMWFDQQVHELWAKEKAWVEARDAALIEVVRKHIGIGIGLEALPLVEEESPNKNKSQGSIDANEFPSEGVDPGRSSSSRWTEMEISNLMQLRTSFEQRFRENNNGYMENGVWDEIAAKMACLGFDRSASECKQIWEEISISLRRTVDECDDGAKRRPWYLGLKLTDDDL*

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