SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20930 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7331739-7333749 FORWARD LENGTH=374 | SoyBase | E_val: 1.00E-142 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG0130 | KOG | RNA-binding protein RBM8/Tsunagi (RRM superfamily) | JGI | ISS | |
| PTHR24012 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24012:SF162 | Panther | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_B9SG63 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SG63_RICCO | SoyBase | E_val: 2.00E-155 | ISS |
| UniRef100_UPI000233DAD1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DAD1 related cluster n=1 Tax=unknown RepID=UPI000233DAD1 | SoyBase | E_val: 0 | ISS |
|
Glyma20g32820 not represented in the dataset |
Glyma20g32820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g34835 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g187000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g32820.3 sequence type=transcript gene model=Glyma20g32820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGAAGCCCATTTACAAGTTCAGCTGTTCAGTTGTAACATAACAGCAGCTTCGGCAGATAAGCAACTGTTCTCAGTTTGTGTTGCCATTTCCACTGAGAAAGACACTCACTTTTGTTTGAATATCCACGAACCAAACCATAGGATTGTGACACAGACATGGAACTTCTCTCTGTGTCTGTCTCACTTAGCAAATGCCAAACATTATCCTTTCCGAAACCAAAGGCACCCCAAATTCACGAACTTCCATTAAACATTAGATTACCCAACAAAACAAATCATTTCAGTCTTTCATCATCTTCTTCTCCTTGTTGTAATTGGTCCATTACTAGGGTAGCAGCAGCAACAACATACCCTTCCTTCAATCCTTCCACCACTCAGAACCCTCACTGGATGGTGCTCATGGACACGCCTCCTCAAGGGGTCAATTCCAAGCCACAAGTCATTGATTATTACGTGAAAACTCTGCAAACCGTTCTTGGCAGTGAGAAAGATGCTCAAATGTGTATATATGATGCTTCATGGAACACTCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCGCCCAGCTGGCCAGTTTACCTGAGGTCTTGTTGGTTAGGCCTGACCTGGAGTTCAACTCTTTGAAAAAAGACTATAGTTTATCAAGTGGCGAGGCAGGCCACCTATCAGGATTACGAACTAGAACTAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAAAATGGATAAGCCCGGGGTTGAGGCTGTTACCAAGGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTGGTGTGCTAGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGCAGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCTGAAGCAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCACCAAGATACCACAGGAATCATGCTGGATGATCAAGTTGACAAAAGAGAAAAGATATGGGAGATAAATGCAATGCATACTTCCTGCAAGTAGTCTTGGCTGGGAGATGTTATTAGCAACATGTGTAACATCGCTGAACAAGTTACTTCTTTATTACTTCATGGCTTATTCTTCCCCTCAGCCTTCATTCTGATTCCAGACTTGTCTTCGGTATGCTAGCAGGTATCTAACAACTAAATCATATTCTCTAGATATGATTAGGCGGTTATGACAACACTTGCCCATGTGAGTGAAAATATAAATCTCTATGTTGACCAGGATTCCTACAGATTGTGCGAGAGTGAGACCGTAGCATGCTGCAGTTGACTAGCAATATTGTAGCCTCTATAGGAATCTGGCTTCCTGTTAAGGAACTGAAAAGAATGGTGATGTTTGGGATCTGGGTTCTTATTGTTAGGTCTTTGGACATTAAAGAGTCCATTTGAAATTAACATATTGTTGGTTGAGATAGTGTTGTAAAATAATATATTCTGAACGAGGGATGAAGCTTTAGCCATTTGGACTAAATTTCCATATTCTCTTCGATTAAATAACATTAATGCATACATGAGAATCAAAAAACTTAGTTGGCCTTATAAGAGTACCTCATATTTCCATAAAATCTTATGACCGGCCAGTGAAGAACTAACGGTAACAATGGATTTTCGAGAGACAAAGTAGACATCATGATTTTTCGAGTTTTTTATCATGAACTTTGGTGCTGGAAGGCGCATATGCCCTGGAATGATGCTAGCTATTAGGATATTATTCTTGATGTTGGGTTCGCTAATCAACTCCTTTGATTGGAAGCTTGAAGGTTGCATTAAACCAGAAGATGTGGACATGGATGGAGGAAGAAAAATTTGGAATTACCTTACTAAAGGCTCAGTCCCTTCGAGTTGTTCCTATTGATATAAGCAGCTAATGATCTGTTTTTGAATGCTGTTGTCGTAATTTTCTTCCAAAGTTGTCTTTCCGGAA
>Glyma20g32820.2 sequence type=CDS gene model=Glyma20g32820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTTCTCTCTGTGTCTGTCTCACTTAGCAAATGCCAAACATTATCCTTTCCGAAACCAAAGGCACCCCAAATTCACGAACTTCCATTAAACATTAGATTACCCAACAAAACAAATCATTTCAGTCTTTCATCATCTTCTTCTCCTTGTTGTAATTGGTCCATTACTAGGGTAGCAGCAGCAACAACATACCCTTCCTTCAATCCTTCCACCACTCAGAACCCTCACTGGATGGTGCTCATGGACACGCCTCCTCAAGGGGTCAATTCCAAGCCACAAGTCATTGATTATTACGTGAAAACTCTGCAAACCGTTCTTGGCAGTGAGAAAGATGCTCAAATGTGTATATATGATGCTTCATGGAACACTCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCGCCCAGCTGGCCAGTTTACCTGAGGTCTTGTTGGTTAGGCCTGACCTGGAGTTCAACTCTTTGAAAAAAGACTATAGTTTATCAAGTGGCGAGGCAGGCCACCTATCAGGATTACGAACTAGAACTAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAAAATGGATAAGCCCGGGGTTGAGGCTGTTACCAAGGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTGGTGTGCTAGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGCAGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCTGAAGCAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCACCAAGATACCACAGGAATCATGCTGGATGA >Glyma20g32820.3 sequence type=CDS gene model=Glyma20g32820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTTCTCTCTGTGTCTGTCTCACTTAGCAAATGCCAAACATTATCCTTTCCGAAACCAAAGGCACCCCAAATTCACGAACTTCCATTAAACATTAGATTACCCAACAAAACAAATCATTTCAGTCTTTCATCATCTTCTTCTCCTTGTTGTAATTGGTCCATTACTAGGGTAGCAGCAGCAACAACATACCCTTCCTTCAATCCTTCCACCACTCAGAACCCTCACTGGATGGTGCTCATGGACACGCCTCCTCAAGGGGTCAATTCCAAGCCACAAGTCATTGATTATTACGTGAAAACTCTGCAAACCGTTCTTGGCAGTGAGAAAGATGCTCAAATGTGTATATATGATGCTTCATGGAACACTCACTTCGGTTTTTGTTGTGACATTGATGAAGAAATATCCGCCCAGCTGGCCAGTTTACCTGAGGTCTTGTTGGTTAGGCCTGACCTGGAGTTCAACTCTTTGAAAAAAGACTATAGTTTATCAAGTGGCGAGGCAGGCCACCTATCAGGATTACGAACTAGAACTAATATGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTAAAATGGATAAGCCCGGGGTTGAGGCTGTTACCAAGGCTCAGATTGTTGATTATTATGCTCAAATTTTGACCAAGGTCATGGGAAATGAGAAGGATGCACAGATGTGTATATATCATGTTTCCTGGAAAACCAACTTCGGTTTTTGCTGTGAACTTGATGAGGATTGTGCACAAGAGCTTGCTGGTGTGCTAGGTGTCTTGTCAGTTCAGCCAGATAACAATTTTGAGTCTGAAAATAAGGATTATGCAGGCAGTAACTTAGAAAATAGTTGGAATGTGTCCAACTCTTCTGAAGCAAGTCAGGAAGCTCCCTTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCAGCATTTGAAGGCTTTGGCGAGTTAGTTGAAGTTAAAGTTATTATGGACAAAATTTCAAAAAGGTCCAAGGGTTATGCATTTGTTGAATACACCACAGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTAACCCACCAAGATACCACAGGAATCATGCTGGATGA
>Glyma20g32820.2 sequence type=predicted peptide gene model=Glyma20g32820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELLSVSVSLSKCQTLSFPKPKAPQIHELPLNIRLPNKTNHFSLSSSSSPCCNWSITRVAAATTYPSFNPSTTQNPHWMVLMDTPPQGVNSKPQVIDYYVKTLQTVLGSEKDAQMCIYDASWNTHFGFCCDIDEEISAQLASLPEVLLVRPDLEFNSLKKDYSLSSGEAGHLSGLRTRTNMLFPAGNSKHWLVKMDKPGVEAVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVLGVLSVQPDNNFESENKDYAGSNLENSWNVSNSSEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYHRNHAG* >Glyma20g32820.3 sequence type=predicted peptide gene model=Glyma20g32820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELLSVSVSLSKCQTLSFPKPKAPQIHELPLNIRLPNKTNHFSLSSSSSPCCNWSITRVAAATTYPSFNPSTTQNPHWMVLMDTPPQGVNSKPQVIDYYVKTLQTVLGSEKDAQMCIYDASWNTHFGFCCDIDEEISAQLASLPEVLLVRPDLEFNSLKKDYSLSSGEAGHLSGLRTRTNMLFPAGNSKHWLVKMDKPGVEAVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQELAGVLGVLSVQPDNNFESENKDYAGSNLENSWNVSNSSEASQEAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKPNPPRYHRNHAG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
