SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04710 | AT | Annotation by Michelle Graham. TAIR10: Zn-dependent exopeptidases superfamily protein | chr5:1357273-1360128 REVERSE LENGTH=526 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004177 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2596 | KOG | Aminopeptidase I zinc metalloprotease (M18) | JGI | ISS | |
| PTHR10761 | Panther | ASPARTYL AMINOPEPTIDASE | JGI | ISS | |
| PF02127 | PFAM | Aminopeptidase I zinc metalloprotease (M18) | JGI | ISS | |
| UniRef100_G7I369 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl aminopeptidase n=2 Tax=Medicago truncatula RepID=G7I369_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NHM0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NHM0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma20g32790 not represented in the dataset |
Glyma20g32790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g34800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g186700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g32790.1 sequence type=CDS gene model=Glyma20g32790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTATGTGATGACTGAGATTAAAATGCGATCTGAGAGTGAAGTTGAATTCAAAGAAAAAATGGCGTCGATAACTGGACCACAGATTCTACTGCACTCTGGTTCTCCATGGTTGAAACAGACGATGAAACCCTCGTCATCACCCTTTCTCCTCTTCCCAAAACACACTCCTCGTCGCACCTTCTGCTCCATCAATTCCAATTCCAAGGGTTCGAGTTCCATCGTTCCCGACCTCCTCCATTACCTGAACCACTCCTGGACCCAATTCCACGCCACAGCCGAAGCTAAACGACAATTACTCGCCGCCGGTTTCCACATGCTCGACGAGAACCACGACTGGCACCTCAAGCCCGGCGGACGCTACTTCTTCACCCGCAACATGTCCTGTTTGGTTGCTTTCGCCATCGGAGATAAGTACAATGTGGGCGACGGCTTTCACGTGATAGCGGCGCACACCGACAGCCCCTGCCTCAAACTGAAGCCCAAAACGGCGTCCTGCAAGTGTAACTACTCCATGGTGAATGTCCAGACTTATGGAGCTGGCTTGTGGTACACTTGGTTTGATAGGGATTTGAGTGTTGCTGGCAGAGTCATTCTCCGAAGTAGCCATAATTCTTATGTGCATAAGCTTGTCAAAATCAATAGACCCATTTTGCGCATTCCCACACTCGCCATTCATCTTGACCGCACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCCTTTACTCTCAATGAAGCCTGAGGACACTTCTTTGGAATCCAACTCCAAGGAGAAGAATAGTGCATTGTCATCCAAAGCTCATCATCATCGGCTGCTTATGCAGGTACTGTCAGATGAGTTAAACTGTGATATTGATGACATAGTGAATATTGAACTGAATGTTTGTGATACTCAACCTAGCTGCCTTGGAGGTGGAAACAATGAATTTATTTTTTCTGGAAGATTAGATAATCTGGCCTCAAGTTATTGTGCATTAAGGGCACTTATTGACTCATGTCAATCTCCTGGTGACTTAGCAAGTGAAAGTGCAATTCGAATGGTTGCTTTATTTGACAATGAAGAGGTGGGTTCAGGTTCTGTTCAAGGAGCTGGAGCACCCACCATGTTTCAGGCCATGAGACGTATAGTTGGTGACTTAGCAAATAACTATGTTAGTGAAGGCTCTTTTGAGCGCACTATTCGCCAATCATTTCTTGTGTCTGCTGATATGGCCCATGGAGTTCATCCAAATTTTATGGATAAGCATGAAGAACTCCACCGACCAGAGCTGCAGAAAGGATTGGTTATTAAGCACAATGCAAACCAGCGATATGCTACTAGTGGAATCACATCTTTTCTTTTTAAAGAAGTTGGAAAAATCCATAACCTTCCAACTCAGGAATTTGCGGTTAGAAATGACATGGGATGTGGATCAACCATAGGCCCAATACTTGCTTCTGGAGTTGGCATCCGAACAGTTGACTGTGGAATTGCTCAACTTTCAATGCACAGTATAAGGGAAATATGTGGGAAGGAAGATATAGACATTGCTTACAAGCATTTCAAAGCTTTCTATCAAAACTTTTCAAGCGTAGACAAGATGCTGACTGTGGATACCTGA
>Glyma20g32790.1 sequence type=predicted peptide gene model=Glyma20g32790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMYVMTEIKMRSESEVEFKEKMASITGPQILLHSGSPWLKQTMKPSSSPFLLFPKHTPRRTFCSINSNSKGSSSIVPDLLHYLNHSWTQFHATAEAKRQLLAAGFHMLDENHDWHLKPGGRYFFTRNMSCLVAFAIGDKYNVGDGFHVIAAHTDSPCLKLKPKTASCKCNYSMVNVQTYGAGLWYTWFDRDLSVAGRVILRSSHNSYVHKLVKINRPILRIPTLAIHLDRTVNQDGFKPNLETHLHPLLSMKPEDTSLESNSKEKNSALSSKAHHHRLLMQVLSDELNCDIDDIVNIELNVCDTQPSCLGGGNNEFIFSGRLDNLASSYCALRALIDSCQSPGDLASESAIRMVALFDNEEVGSGSVQGAGAPTMFQAMRRIVGDLANNYVSEGSFERTIRQSFLVSADMAHGVHPNFMDKHEELHRPELQKGLVIKHNANQRYATSGITSFLFKEVGKIHNLPTQEFAVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSIREICGKEDIDIAYKHFKAFYQNFSSVDKMLTVDT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
