Glyma20g32710 - SoyBase

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Report for Sequence Feature Glyma20g32710

Feature Type:	gene_model
Chromosome:	Gm20
Start:	41341666
stop:	41343980
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g32710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34620	AT	Annotation by Michelle Graham. TAIR10: small subunit ribosomal protein 16 \| chr4:16535084-16536092 REVERSE LENGTH=113	SoyBase	E_val: 9.00E-39	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3419	KOG	Mitochondrial/chloroplast ribosomal protein S16	JGI		ISS
PTHR12919	Panther	30S RIBOSOMAL PROTEIN S16	JGI		ISS
PF00886	PFAM	Ribosomal protein S16	JGI		ISS
UniRef100_B3IWG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 30S ribosomal protein S16 n=1 Tax=Medicago truncatula RepID=B3IWG1_MEDTR	SoyBase	E_val: 8.00E-51	ISS
UniRef100_UPI000233DA7D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DA7D related cluster n=1 Tax=unknown RepID=UPI000233DA7D	SoyBase	E_val: 4.00E-86	ISS

Expression Patterns of Glyma20g32710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g32710 not represented in the dataset	Glyma20g32710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g32710

Paralog	Evidence	Comments
Glyma10g34750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g32710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g186000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g32710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g32710

Limit To All Plant Sequences

>Glyma20g32710.2   sequence type=transcript   gene model=Glyma20g32710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGACACCCACATGGATAGTGCCAATAGCAATTTTGGAGTGCCAATAGCAATCCCCTTAACATCCTGATCCTTCCCTCCACTCACTCTTATCTCATTTTTGTTCCTTCTTTTTCACCCCAAACTCTTTGTATTGTGGTGAATGTTTGAGTGCAGAAGGTATAAAAAATGGTGGTGAAGATTCGATTGGCAAGGCTCGGGTGCAGGAACCACCCATTCTATCGCGTGGTTGTTACTGATAGCAAAACAACAAGAGATGGCAAGCAACTTGAAGTTTTAGGTTTCTACAATCCCGTCGCAGGCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAAGTATTGGCTTTCTGTCGGAGCTAAGCCTTCAGAGCCTGTTGAGCATCTTCTGTTTCGAGCAGGTTTAGGACAATCTCATCAATTCCCTGTTGCTGCTCTAAATGGACATTTCCTCAACCAAGACCAACCAACCAATGCTGATCACAATGGTGTATCTCCAGAAGCTATATTTTCTATTGGCCTACAAGTTTGAAGAGAATAGCTACCATACATTTGGAGAAGGTCATCCTTTATTTTCCATTGGAGTTCTTGTTCAGTTTGCTAGAGTAGAGGGTTTGATGTAAGGAGCGTTTATCATGTCCTGAAGCCGTGCAGTTGCCATGCTTCATCTAAAAATATGGAATCACTGGATCTTCAGAATAGTGGTTTACACATTAATCCAGTCCAAGTGTCATAGAAATTAGGCATCTCCTGTCTTAAAACCACAAATGAAATGAGCCTATGTTTCGAGTAAAACTAACAGGATTCTATAATTTGTTCTTTCCTGTATGAGTCTAGGATTTGTTTGTGCAGTGTCCATGTTATAGGGCCTGTTTGGGTAAGCTTCTCTACTTCTAGAGAAACTTACCCAAACAGTGTCTGTAAAAATATCTGTTGATTAAAAACAGTCAATGAAAAACTTCCGCAACTATATGCTTACTATAAAGAGGATAGCAGAGACATCTTG

Coding sequences of Glyma20g32710

Limit To All Plant Sequences

>Glyma20g32710.1   sequence type=CDS   gene model=Glyma20g32710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGAAGATTCGATTGGCAAGGCTCGGGTGCAGGAACCACCCATTCTATCGCGTGGTTGTTACTGATAGCAAAACAACAAGAGATGGCAAGCAACTTGAAGTTTTAGGTTTCTACAATCCCGTCGCAGGCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAAGTATTGGCTTTCTGTCGGAGCTAAGCCTTCAGAGCCTGTTGAGCATCTTCTGTTTCGAGCAGGTTTAGGACAATCTCATCAATTCCCTGTTGCTGCTCTAAATGGACATTTCCTCAACCAAGACCAACCAACCAATGCTGATCACAATGGTGTATCTCCAGAAGCTATATTTTCTATTGGCCTACAAGTTTGA

>Glyma20g32710.2   sequence type=CDS   gene model=Glyma20g32710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGAAGATTCGATTGGCAAGGCTCGGGTGCAGGAACCACCCATTCTATCGCGTGGTTGTTACTGATAGCAAAACAACAAGAGATGGCAAGCAACTTGAAGTTTTAGGTTTCTACAATCCCGTCGCAGGCAAGGATGATGAGAAAAGAATGAGTCTCAAACTGGAAAGAGTCAAGTATTGGCTTTCTGTCGGAGCTAAGCCTTCAGAGCCTGTTGAGCATCTTCTGTTTCGAGCAGGTTTAGGACAATCTCATCAATTCCCTGTTGCTGCTCTAAATGGACATTTCCTCAACCAAGACCAACCAACCAATGCTGATCACAATGGTGTATCTCCAGAAGCTATATTTTCTATTGGCCTACAAGTTTGA

Predicted protein sequences of Glyma20g32710

Limit To All Plant Sequences

>Glyma20g32710.1   sequence type=predicted peptide   gene model=Glyma20g32710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVKIRLARLGCRNHPFYRVVVTDSKTTRDGKQLEVLGFYNPVAGKDDEKRMSLKLERVKYWLSVGAKPSEPVEHLLFRAGLGQSHQFPVAALNGHFLNQDQPTNADHNGVSPEAIFSIGLQV*

>Glyma20g32710.2   sequence type=predicted peptide   gene model=Glyma20g32710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVKIRLARLGCRNHPFYRVVVTDSKTTRDGKQLEVLGFYNPVAGKDDEKRMSLKLERVKYWLSVGAKPSEPVEHLLFRAGLGQSHQFPVAALNGHFLNQDQPTNADHNGVSPEAIFSIGLQV*

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