Report for Sequence Feature Glyma20g32510
Feature Type: gene_model
Chromosome: Gm20
Start: 41115900
stop: 41117631
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g32510
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13540 AT
Annotation by Michelle Graham. TAIR10: myb domain protein 5 | chr3:4420239-4421443 FORWARD LENGTH=249
SoyBase E_val: 5.00E-53 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009845 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed germination
SoyBase N/A ISS
GO:0010026 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome differentiation
SoyBase N/A ISS
GO:0010090 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis
SoyBase N/A ISS
GO:0010214 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed coat development
SoyBase N/A ISS
GO:0010468 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of gene expression
SoyBase N/A ISS
GO:0048354 GO-bp
Annotation by Michelle Graham. GO Biological Process: mucilage biosynthetic process involved in seed coat development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
KOG0048
KOG
Transcription factor, Myb superfamily
JGI ISS
PTHR10641 Panther
MYB-RELATED
JGI ISS
PF00249 PFAM
Myb-like DNA-binding domain
JGI ISS
UniRef100_B8RCA6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MybPA2 n=1 Tax=Vitis vinifera RepID=B8RCA6_VITVI
SoyBase E_val: 8.00E-59 ISS
UniRef100_UPI000233C1D1 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233C1D1 related cluster n=1 Tax=unknown RepID=UPI000233C1D1
SoyBase E_val: 3.00E-175 ISS
Expression Patterns of Glyma20g32510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma20g32510 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g184200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g32510
Coding sequences of Glyma20g32510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g32510.2 sequence type=CDS gene model=Glyma20g32510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAAGAAAGGGCAGGAGTTGTGACAACCAAGATGCCGTGAACAGAGGTCCTTGGTCTGCTGAGGAAGACCAAATACTCATCAACTACGTTCAAGTCCATGGAGAAGGAAATTGGAGAGAGCTTTCCAAAAGAGCTGGTTTAAAACGACTTGGGAAGAGTTGCAGACTCCGATGGTTGAATTATCTCAAGCCAGATATCAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATCATCAGGCTACATAGCCTCTTAGGGAATAGGTGGTCTCTTATTGCAGGACGATTACCCGGGCGAACAGATCATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAGGTAGAGCAAAACCACAACTATAACAACCTTCCTGGTCATAACAACATTCCCATCAAATTAAGAATTGAATCTCCACGGTGCTCAAAAAATTCATTGGGTATTGTTATTGATCCTACAAAATCCTCTCACCCAGTGACGATTAAGTCAATGAGCTGCACCGAGGTTATGATGCCAACGCGAACAGTCAATGATTTTACAACAAGTTGGGATAAAAACCCTTTTGCATCGACCCCACAAGATGGCCATGGTCATTGCTCAGAAGGTTTCCTCAAACACTTTGATATTAGTGACGTATTAATGCCATACGAGGATTGTCGTTTTAATGAATATGCTTGTGTCGAAGTACCCCAACATTTTGGAGATGAAGCCTACAAGGTTATTAATGCGGTGGGTGAAACACGGTATGATAATTGGAAGATTGATGACTATTTTCCACTAGACTATGATGTAGGTTTTTCTTTATTTTAA
Predicted protein sequences of Glyma20g32510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g32510.2 sequence type=predicted peptide gene model=Glyma20g32510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKRKGRSCDNQDAVNRGPWSAEEDQILINYVQVHGEGNWRELSKRAGLKRLGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDHEIKNYWNTYLRKKVEQNHNYNNLPGHNNIPIKLRIESPRCSKNSLGIVIDPTKSSHPVTIKSMSCTEVMMPTRTVNDFTTSWDKNPFASTPQDGHGHCSEGFLKHFDISDVLMPYEDCRFNEYACVEVPQHFGDEAYKVINAVGETRYDNWKIDDYFPLDYDVGFSLF*