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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10370 | AT | Annotation by Michelle Graham. TAIR10: FAD-dependent oxidoreductase family protein | chr3:3216502-3219027 FORWARD LENGTH=629 | SoyBase | E_val: 0 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006071 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol metabolic process | SoyBase | N/A | ISS |
| GO:0006072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process | SoyBase | N/A | ISS |
| GO:0006127 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerophosphate shuttle | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0019563 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol catabolic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0009331 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: glycerol-3-phosphate dehydrogenase complex | SoyBase | N/A | ISS |
| GO:0004368 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0042 | KOG | Glycerol-3-phosphate dehydrogenase | JGI | ISS | |
| PTHR11985 | Panther | GLYCEROL-3-PHOSPHATE DEHYDROGENASE | JGI | ISS | |
| PF01266 | PFAM | FAD dependent oxidoreductase | JGI | ISS | |
| UniRef100_B9SUD3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SUD3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NHI5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHI5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g32390 not represented in the dataset |
Glyma20g32390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g35170 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g183100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g32390.2 sequence type=transcript gene model=Glyma20g32390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTCACTTTCAACTTCCAACCCCACTCCATAAACCGTTTTATTGTTCCTTCAATTAATAAATAATAATAATCTTAACCACCGTTTCCTCACCGCGCTTTTCATCATCGCACCGCACACATGACGCGCCTCAGAAAACTCGGCGCCGTCGCCACGGCCACGGCCAGCGCGTACGGCAGCGTCCTCTTCCTGCACTCGTCTCTCGTCTCCGCCGGCGACAACGGAGGCGGCTCCCCCCTCGAGGCCCTCCGGAAGAAGGTGCACGACCCCGGCGCCGTCGTGCCGGCCAGGGAGGCGCAGCAGTCAGCGCTCAAGGCCGCCGGCAAGTCGAATCCGCTCGACGTTCTCGTCATCGGCGGCGGCGCCACCGGTTCCGGCACCGCCCTCGACGCCGTCACGCGAGGACTCCGCGTCGGGCTCGTGGAGAGGGAGGATTTCGCCTCCGGAACTTCGTCGCGATCCACGAAGCTCCTTCATGGAGGCGTTCGATACCTGGAGAAAGCTGTATTTAACCTTGACTATGGACAATTCAAGTTAGTGCTTCATGCACTTGAAGAGCGGAAACAGGTTATTGAAAATGCACCACACCTATGTCATGCATTGCCATGCATGACACCGTGTTTTAGCTGGTTTGAAGTAGTGTACTACTGGATGGGCTTGAAAATGTATGATTTGGTCGCCGGAAGACAACTGTTGCACTTATCAAGATATTATTCGACAAAAGAGTCTGTTGAGCTCTTTCCCACTCTGGCAAGGGTGGTAAATGATAGAAGCCTAAGGGGAACAGTTGTTTATTATGATGGGCAGATGAATGATGCACGGCTTAATGTTGGATTGGCTTGTACTGCTGCTCTAGCTGGTGCAGCAGTGCTGAACCATGCAGAAGTTGTGTCCTTACTGAAGGACGATGACGGAAAACGGATAATTGGTGCACGAATTCGGGACAATTTAACTGGCAAAGAGTTTGATACATATGCAAAGGTAATTGTGAATGCGGGTGGGCCATTTTGTGACTCTATAAGGAAAATGGCCAACAAAAATGCACAGGAAATGATTTCTCCCAGCAGTGGGGTGCATATTATACTCCCTGATTATTATTCTCCTGAAGGAATGGGCCTAATTGTCCCTAAAACTAAGGATGGACGTGTTGTTTTCATGCTGCCATGGCTGGGAAGAACAGTTGCTGGGACTACAGATTCTAGCACTAGCATTACTTATCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAGTACGCCGTGTTGATGTTCTTTCTGCTTGGAGTGGCATTCGGCCATTAGCATTGGACCCAACAGCCAAAAATACTGAGAGTATCTCAAGGGATCATGTTGTTTGGGAGGATTACCCTGGTTTGGTCACCATCACTGGTGGCAAGTGGACTACCTATCGAAGCATGGCAGAAGATGCTGTTAATGCAGCTATAAAGTCTGGAAAGCTGACCCCCACCAGTATATGTGTGACCAACAATCTCCGGCTTGTTGGTGGTGAAGGGTGGGAGCCTTCTTCTTTTACAGTTCTTGCTCAACAGTATAAGCGCATGAAAAGTACATATAGGGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTGTTGCAAAGCACTTGTCTCAGGCATATGGAACATTAGCCGAGCGTGTGGCTACCATTGCTCAGGTCTCTAAAGAGTTGCTCCTTAAAGGGATGGTAGGCTGTGATGGTCTCTATCTATTCCCTGATTTGCTTCAGCCGGCTAGACAGCAACTCCAGCCCTCTTTCACTGTCAATACCATCTGTGCTGCTGGCTCAGAACCTGTGCCAACTACTTCTTCTCTAGATTCTGTTTCACCTAGTGTAAATAGAATCAGTCCTAGTGTATCTCATGTAAGTACTCTTTCTAATAGTCATCTTTCTTGACACATGGTTGAAACTGCCCTCACTATGTTATCTCAAGTCGTCTCTTGAGTACTGGGACCATGCTGTTACTTCTGCTTTGTATCTTATCAATCACCTTCCATTATCCTCTATTAATCAGGAGCTGACTTATCAGAAATTGTTCAACAGACTCCCAGATTATAAGTTCCTGAAAGTGTTTGGATGTGCTTGCTATCCTCTCCTACGCCCCTACAATCAGAATAAGCTTCAACCAAGGTCTCAGGAGTACCCTTTTCTAGGCTATTCTCTCTCTCACAAGGGTTACAAGTGCATGGCTTAAGATGGCAGGATGTATATTTCAAAGGATGTGATATTTGATGAGTTGACCTTTCCTTTTCCTAGGTTGTTTGGAGAACCAGACTCAGTATCCTCAACTACTGCTGCTGTTTCTTCCTCTCAACAGCCCCTAACAGTTCTGTCTACACCTCCAACAGGAGTCACTCCTCCCACTCTTGACAACCCTACTCCTGCAGGCCAAGTGGATGATGATTCCTCAACAGCTAGTTCAACTTCAGTGGGAGCAAATTCTGTTTCAGATGCTGACTCTCAATCAGCTCCAGCAGTTCATGTCAGACC
>Glyma20g32390.1 sequence type=CDS gene model=Glyma20g32390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGCGCCTCAGAAAACTCGGCGCCGTCGCCACGGCCACGGCCAGCGCGTACGGCAGCGTCCTCTTCCTGCACTCGTCTCTCGTCTCCGCCGGCGACAACGGAGGCGGCTCCCCCCTCGAGGCCCTCCGGAAGAAGGTGCACGACCCCGGCGCCGTCGTGCCGGCCAGGGAGGCGCAGCAGTCAGCGCTCAAGGCCGCCGGCAAGTCGAATCCGCTCGACGTTCTCGTCATCGGCGGCGGCGCCACCGGTTCCGGCACCGCCCTCGACGCCGTCACGCGAGGACTCCGCGTCGGGCTCGTGGAGAGGGAGGATTTCGCCTCCGGAACTTCGTCGCGATCCACGAAGCTCCTTCATGGAGGCGTTCGATACCTGGAGAAAGCTGTATTTAACCTTGACTATGGACAATTCAAGTTAGTGCTTCATGCACTTGAAGAGCGGAAACAGGTTATTGAAAATGCACCACACCTATGTCATGCATTGCCATGCATGACACCGTGTTTTAGCTGGTTTGAAGTAGTGTACTACTGGATGGGCTTGAAAATGTATGATTTGGTCGCCGGAAGACAACTGTTGCACTTATCAAGATATTATTCGACAAAAGAGTCTGTTGAGCTCTTTCCCACTCTGGCAAGGGTGGTAAATGATAGAAGCCTAAGGGGAACAGTTGTTTATTATGATGGGCAGATGAATGATGCACGGCTTAATGTTGGATTGGCTTGTACTGCTGCTCTAGCTGGTGCAGCAGTGCTGAACCATGCAGAAGTTGTGTCCTTACTGAAGGACGATGACGGAAAACGGATAATTGGTGCACGAATTCGGGACAATTTAACTGGCAAAGAGTTTGATACATATGCAAAGGTAATTGTGAATGCGGGTGGGCCATTTTGTGACTCTATAAGGAAAATGGCCAACAAAAATGCACAGGAAATGATTTCTCCCAGCAGTGGGGTGCATATTATACTCCCTGATTATTATTCTCCTGAAGGAATGGGCCTAATTGTCCCTAAAACTAAGGATGGACGTGTTGTTTTCATGCTGCCATGGCTGGGAAGAACAGTTGCTGGGACTACAGATTCTAGCACTAGCATTACTTATCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAGTACGCCGTGTTGATGTTCTTTCTGCTTGGAGTGGCATTCGGCCATTAGCATTGGACCCAACAGCCAAAAATACTGAGAGTATCTCAAGGGATCATGTTGTTTGGGAGGATTACCCTGGTTTGGTCACCATCACTGGTGGCAAGTGGACTACCTATCGAAGCATGGCAGAAGATGCTGTTAATGCAGCTATAAAGTCTGGAAAGCTGACCCCCACCAGTATATGTGTGACCAACAATCTCCGGCTTGTTGGTGGTGAAGGGTGGGAGCCTTCTTCTTTTACAGTTCTTGCTCAACAGTATAAGCGCATGAAAAGTACATATAGGGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTGTTGCAAAGCACTTGTCTCAGGCATATGGAACATTAGCCGAGCGTGTGGCTACCATTGCTCAGAATGAAAATTTGGGTAAACGACTTGCCCACGGTTACCCTTATCTGGAGGCAGAAGTGGCGTACTGTGCTCGTAATGAATATTGTGAATCTGCTATTGATTTCATTGCTAGGAGAACTCGTCTTGCTTTCCTTGAAACTAACGCAGCACGAAAGGCATTGCCTCGTGTGATTGAAATATTGGCAAATGAGCACAAGTGGGACAATTCAAAGCAGAAGGAAGAGTTGGAGAAGGCTACAGAGTTTTTGAAGACTTTTAAATCCTCCAAAAATGCTCAGTTCCATGATGGGAAACACAGTTAG >Glyma20g32390.2 sequence type=CDS gene model=Glyma20g32390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGCGCCTCAGAAAACTCGGCGCCGTCGCCACGGCCACGGCCAGCGCGTACGGCAGCGTCCTCTTCCTGCACTCGTCTCTCGTCTCCGCCGGCGACAACGGAGGCGGCTCCCCCCTCGAGGCCCTCCGGAAGAAGGTGCACGACCCCGGCGCCGTCGTGCCGGCCAGGGAGGCGCAGCAGTCAGCGCTCAAGGCCGCCGGCAAGTCGAATCCGCTCGACGTTCTCGTCATCGGCGGCGGCGCCACCGGTTCCGGCACCGCCCTCGACGCCGTCACGCGAGGACTCCGCGTCGGGCTCGTGGAGAGGGAGGATTTCGCCTCCGGAACTTCGTCGCGATCCACGAAGCTCCTTCATGGAGGCGTTCGATACCTGGAGAAAGCTGTATTTAACCTTGACTATGGACAATTCAAGTTAGTGCTTCATGCACTTGAAGAGCGGAAACAGGTTATTGAAAATGCACCACACCTATGTCATGCATTGCCATGCATGACACCGTGTTTTAGCTGGTTTGAAGTAGTGTACTACTGGATGGGCTTGAAAATGTATGATTTGGTCGCCGGAAGACAACTGTTGCACTTATCAAGATATTATTCGACAAAAGAGTCTGTTGAGCTCTTTCCCACTCTGGCAAGGGTGGTAAATGATAGAAGCCTAAGGGGAACAGTTGTTTATTATGATGGGCAGATGAATGATGCACGGCTTAATGTTGGATTGGCTTGTACTGCTGCTCTAGCTGGTGCAGCAGTGCTGAACCATGCAGAAGTTGTGTCCTTACTGAAGGACGATGACGGAAAACGGATAATTGGTGCACGAATTCGGGACAATTTAACTGGCAAAGAGTTTGATACATATGCAAAGGTAATTGTGAATGCGGGTGGGCCATTTTGTGACTCTATAAGGAAAATGGCCAACAAAAATGCACAGGAAATGATTTCTCCCAGCAGTGGGGTGCATATTATACTCCCTGATTATTATTCTCCTGAAGGAATGGGCCTAATTGTCCCTAAAACTAAGGATGGACGTGTTGTTTTCATGCTGCCATGGCTGGGAAGAACAGTTGCTGGGACTACAGATTCTAGCACTAGCATTACTTATCTTCCAGAACCACATGAAGATGAAATACAATTTATATTGGATGCCATCTCTGATTACCTTAATGTTAAAGTACGCCGTGTTGATGTTCTTTCTGCTTGGAGTGGCATTCGGCCATTAGCATTGGACCCAACAGCCAAAAATACTGAGAGTATCTCAAGGGATCATGTTGTTTGGGAGGATTACCCTGGTTTGGTCACCATCACTGGTGGCAAGTGGACTACCTATCGAAGCATGGCAGAAGATGCTGTTAATGCAGCTATAAAGTCTGGAAAGCTGACCCCCACCAGTATATGTGTGACCAACAATCTCCGGCTTGTTGGTGGTGAAGGGTGGGAGCCTTCTTCTTTTACAGTTCTTGCTCAACAGTATAAGCGCATGAAAAGTACATATAGGGGTAAAGTTGTTCCCGGGGTAATGGATTCTGCTGTTGCAAAGCACTTGTCTCAGGCATATGGAACATTAGCCGAGCGTGTGGCTACCATTGCTCAGGTCTCTAAAGAGTTGCTCCTTAAAGGGATGGTAGGCTGTGATGGTCTCTATCTATTCCCTGATTTGCTTCAGCCGGCTAGACAGCAACTCCAGCCCTCTTTCACTGTCAATACCATCTGTGCTGCTGGCTCAGAACCTGTGCCAACTACTTCTTCTCTAGATTCTGTTTCACCTAGTGTAAATAGAATCAGTCCTAGTGTATCTCATGTAAGTACTCTTTCTAATAGTCATCTTTCTTGA
>Glyma20g32390.1 sequence type=predicted peptide gene model=Glyma20g32390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTRLRKLGAVATATASAYGSVLFLHSSLVSAGDNGGGSPLEALRKKVHDPGAVVPAREAQQSALKAAGKSNPLDVLVIGGGATGSGTALDAVTRGLRVGLVEREDFASGTSSRSTKLLHGGVRYLEKAVFNLDYGQFKLVLHALEERKQVIENAPHLCHALPCMTPCFSWFEVVYYWMGLKMYDLVAGRQLLHLSRYYSTKESVELFPTLARVVNDRSLRGTVVYYDGQMNDARLNVGLACTAALAGAAVLNHAEVVSLLKDDDGKRIIGARIRDNLTGKEFDTYAKVIVNAGGPFCDSIRKMANKNAQEMISPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTSITYLPEPHEDEIQFILDAISDYLNVKVRRVDVLSAWSGIRPLALDPTAKNTESISRDHVVWEDYPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLTPTSICVTNNLRLVGGEGWEPSSFTVLAQQYKRMKSTYRGKVVPGVMDSAVAKHLSQAYGTLAERVATIAQNENLGKRLAHGYPYLEAEVAYCARNEYCESAIDFIARRTRLAFLETNAARKALPRVIEILANEHKWDNSKQKEELEKATEFLKTFKSSKNAQFHDGKHS* >Glyma20g32390.2 sequence type=predicted peptide gene model=Glyma20g32390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTRLRKLGAVATATASAYGSVLFLHSSLVSAGDNGGGSPLEALRKKVHDPGAVVPAREAQQSALKAAGKSNPLDVLVIGGGATGSGTALDAVTRGLRVGLVEREDFASGTSSRSTKLLHGGVRYLEKAVFNLDYGQFKLVLHALEERKQVIENAPHLCHALPCMTPCFSWFEVVYYWMGLKMYDLVAGRQLLHLSRYYSTKESVELFPTLARVVNDRSLRGTVVYYDGQMNDARLNVGLACTAALAGAAVLNHAEVVSLLKDDDGKRIIGARIRDNLTGKEFDTYAKVIVNAGGPFCDSIRKMANKNAQEMISPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTSITYLPEPHEDEIQFILDAISDYLNVKVRRVDVLSAWSGIRPLALDPTAKNTESISRDHVVWEDYPGLVTITGGKWTTYRSMAEDAVNAAIKSGKLTPTSICVTNNLRLVGGEGWEPSSFTVLAQQYKRMKSTYRGKVVPGVMDSAVAKHLSQAYGTLAERVATIAQVSKELLLKGMVGCDGLYLFPDLLQPARQQLQPSFTVNTICAAGSEPVPTTSSLDSVSPSVNRISPSVSHVSTLSNSHLS*
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