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Report for Sequence Feature Glyma20g32311

Feature Type:gene_model
Chromosome:Gm20
Start:40915985
stop:40916890
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36985AT Annotation by Michelle Graham. TAIR10: DVL family protein | chr2:15534943-15535104 REVERSE LENGTH=53 SoyBaseE_val: 7.00E-12ISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF08137PFAM DVL family JGI ISS
UniRef100_I1NHI1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NHI1_SOYBN SoyBaseE_val: 6.00E-52ISS
UniRef100_Q8S8S3UniRef Annotation by Michelle Graham. Most informative UniRef hit: DVL11 n=2 Tax=Arabidopsis RepID=Q8S8S3_ARATH SoyBaseE_val: 2.00E-08ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g32311 not represented in the dataset

Glyma20g32311 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g35241 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g32311.1   sequence type=CDS   gene model=Glyma20g32311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGCTATCACAAACTTCCCTCACAATCACACCACACCAAACCAAACCAATTGGAAACTTCACCTCTCCACACCCAATTTGCCTCTCCCTTTTTTCTTATTCTCTCTTTCTCCAAAGTTAACACAAGGCATTTAATTTGTAGCTACATCATCAACTTCAGAAAGAATAAAACCAATCATCACAAGGAATATTTATTCATTGAGAGAGATATGATGCAAGAAGACATCAGCTCATGCACTAGACATGTCTTTGAACCATTCAAATCCTTTGGAAGGAGATGCACTAGGCTTGCTAAGGAGCAAAGGGCAAGGTTCTATATCTTCCGGAGGTGCATCACAATGCTTGTCTGCTGGAGAGAATGA

>Glyma20g32311.1   sequence type=predicted peptide   gene model=Glyma20g32311   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACYHKLPSQSHHTKPNQLETSPLHTQFASPFFLILSFSKVNTRHLICSYIINFRKNKTNHHKEYLFIERDMMQEDISSCTRHVFEPFKSFGRRCTRLAKEQRARFYIFRRCITMLVCWRE*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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