Glyma20g32135 - SoyBase

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Report for Sequence Feature Glyma20g32135

Feature Type:	gene_model
Chromosome:	Gm20
Start:	40774295
stop:	40780580
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g32135

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53260	AT	Annotation by Michelle Graham. TAIR10: phenylalanine ammonia-lyase 2 \| chr3:19744256-19746619 REVERSE LENGTH=717	SoyBase	E_val: 0	ISS
GO:0006559	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-phenylalanine catabolic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009699	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016841	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ammonia-lyase activity	SoyBase	N/A	ISS
GO:0045548	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phenylalanine ammonia-lyase activity	SoyBase	N/A	ISS
KOG0222	KOG	Phenylalanine and histidine ammonia-lyase	JGI		ISS
PTHR10362	Panther	IMIDAZOLONEPROPIONASE AND HISTIDINE AMMONIA-LYASE	JGI		ISS
PTHR10362:SF3	Panther	PHENYLALANINE AMMONIA-LYASE	JGI		ISS
PF00221	PFAM	Phenylalanine and histidine ammonia-lyase	JGI		ISS
UniRef100_Q9SMK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phenylalanine ammonia-lyase 2 n=1 Tax=Cicer arietinum RepID=PAL2_CICAR	SoyBase	E_val: 0	ISS
UniRef100_Q9SMK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phenylalanine ammonia-lyase 2 n=1 Tax=Cicer arietinum RepID=PAL2_CICAR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g32135

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g32135 not represented in the dataset	Glyma20g32135 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g32135

Paralog	Evidence	Comments
Glyma10g35381	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g32135 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g180800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g32135

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g32135

Limit To All Plant Sequences

>Glyma20g32135.1   sequence type=CDS   gene model=Glyma20g32135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATATTCAAAGGAAATTCTTAGCAATGGCAATGCAAATGGTTCATTGAATCTTTGCAATGGTAGCACGGACCCACTTAACTGGGGCATGGCTGCGGAAGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGAATGGTGGAGGACTACCGTAACCCCGTGGTGAAGTTGGGTGGCAAGAGCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCACCCGGCACCACGGCGGAGTTACGGTGGAGCTGGCCAAGGAGACCCGCCACGGTGTCAAGGCCAGCAGTGACTGGGTCATGGATAGCATGGTTAAGGGCACTGATAGTTACGGAGTCACCACAGGGTTCGGTGCAACCTCACATAGAAGAACCAAACAAGGTGCTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCTGGCATTTTTGGTAATGGCACAGAATCTTGTCACACCTTACCTCACTCAGCTACAAGGGCAGCCATGTTGGTTAGAATCAATACCTTGCTTCAAGGATATTCAGGCATTAGATTTGAAATCATGGAGGCCATTTCTAAGTTTTTGAACCATAACATAACCCCATGTCTTCCTCTTCGTGGCACAATCACTGCATCAGGTGACTTGGTTCCTTTATCATATGTTGCTGGCCTCTTAATTGGAAGGCCAAACTCCAAGTCTATTGGACCTAATGGACAAGTTCTTAATGCTAAAGAGGCCTTTCAACTAGCAGGAATTGATGGTGGTTTCTTTGAGTTGCAACCTAAAGAGGGTTTGGCACTAGTAAATGGCACTGCAGTAGGATCTGGCTTGGCTTCCGTGGTCCTTTTTGAGGCAAACTTACTTGTCATTCTTTCTGAAGTCTTGTCTGCAATTTTTGCTGAAGTTATGCAAGGAAAACCAGAGTTCACCGACCACTTGACTCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATCATGGAACATATATTAGATGGAAGCTCATATTGTAAGGCAGCACGGAAGTTACATGAGATTGATCCACTTCAAAAGCCTAAACAAGATAGGTATGCTCTTAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATTAGGCATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGATAACCCCTTGATTGATGTTTCAAGGAATAAGGCACTACATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTAGCCATTGCATCAATTGGGAAACTTATGTTTGCCCAATTCTCTGAACTTGTAAATGACTTCTACAACAATGGTTTGCCTTCAAATCTAACAGCTAGTCGCAATCCGAGCTTAGATTATGGATTCAAAGGTGCTGAAATTGCAATGGCATCCTATTGTTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTCCAAAGCGCTGAGCAACATAACCAAGATGTGAACTCTTTAGGCTTAGTTTCTTCAAGAAAGACAGCTGAAGCAATAGATATATTAAAGCTTATGTCATCCACTTTCTTAGTTGCTTTGTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAACACTGTTAGGAATACCGTTAGTCAAGTGGCCAAAAGAGTTCTCACAGTTGGCATCAATGGTGAGTTACATCCTTCTAGGTTCTGTGAGAAAGACTTGCTTAAAATTGTTGATCGTGAGTATGTCTATGCTTACATTGATGACCCCTGTAGTGCAACCTACCCTCTGATGCAAAAATTGAGATTAGTCCTAGTTGATCATGCATTACAAAATGGTGACAAAGAGGTGAATTCAAGTACCTCAATTTTCCAAAAGATTGGTGCCTTTGAGGAAGAGCTCAATGCCCTTTTGCCAAAAGAGGTGGAAAGTTCTAGGATTGAAGTTGAGAATGGAAATCCTGCCATTCCTAACCGAATTAAGGAATGCAGATCTTACCCATTATATAAGTTTGTTAGAGAAAATTTGGGTACAACTTTGCTAACAGGAGAGAAAGTCAAGTCACCTGGTGAGGAATTTGATAAGGTATTTACTGCATTGTGTGAAGGGAAGTTAATTGATCCTTTGTTGGACTGTCTAAAAGAGTGGAAGGGTGCTCCTCTACCAATATGCTGA

Predicted protein sequences of Glyma20g32135

Limit To All Plant Sequences

>Glyma20g32135.1   sequence type=predicted peptide   gene model=Glyma20g32135   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEYSKEILSNGNANGSLNLCNGSTDPLNWGMAAEALKGSHLDEVKRMVEDYRNPVVKLGGKSLTVSQVAAVATRHHGGVTVELAKETRHGVKASSDWVMDSMVKGTDSYGVTTGFGATSHRRTKQGAALQNELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEIMEAISKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASVVLFEANLLVILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYCKAARKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVRNTVSQVAKRVLTVGINGELHPSRFCEKDLLKIVDREYVYAYIDDPCSATYPLMQKLRLVLVDHALQNGDKEVNSSTSIFQKIGAFEEELNALLPKEVESSRIEVENGNPAIPNRIKECRSYPLYKFVRENLGTTLLTGEKVKSPGEEFDKVFTALCEGKLIDPLLDCLKEWKGAPLPIC*

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