SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52980 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482329-21483642 REVERSE LENGTH=222 | SoyBase | E_val: 4.00E-88 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF11712 | PFAM | Endoplasmic reticulum-based factor for assembly of V-ATPase | JGI | ISS | |
| UniRef100_B7E9W2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: cDNA clone:002-116-F08, full insert sequence n=2 Tax=Oryza sativa Japonica Group RepID=B7E9W2_ORYSJ | SoyBase | E_val: 9.00E-39 | ISS |
| UniRef100_I1NHD8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHD8_SOYBN | SoyBase | E_val: 2.00E-154 | ISS |
|
Glyma20g31840 not represented in the dataset |
Glyma20g31840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g35690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g178200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g31840.4 sequence type=transcript gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAATTAGAAAGAAAAAAAAAAGTTGAACTATTTAACGAGAGAAAGGAGAGAATTATTATCTTGCGATTGGTGAATGGTGTATAGTGCGGGAGACAGTAGCAAATAGAACCAAGCCAACAATGGGTACCGACAAGCCAAACCGGGTCGGGTCGTTTATATACATCACTGATCCGATTCGTGTTTTCCTCTCCGGCGCGTCGAAAGACGCGACTCTCTCCGACGAGCTTCGACGAACATCCTCCGATCTGCTCCTCCAATCGGATGTACCCTACGCGCAACTTCGCGCTGTGTGGATGGCCTCTGATCCATCCACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGAAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCCGGAACCGTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTCAATCACAGTCCTGCCATGAATGCTGCTGGAGGAATTCTGGGGTTGGTTGGTGCCATGTTTGTGGAAACTTTCCTTTTCATTATTAGAAGTTCCAATACAGATGCCAACAAAACAAGAAAATCCAGTCAGAAGGCGAGATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTGACATGAGCACCTTGCCACCCCTCCCTGCACCAGTGAAGAAAGAAGTAGCAATTCTTTAACTGACCCGAGTATTTCATGATTTTTGGCCTCTTGGGATGTGGTTGAGCATTATGCAGGGATGTTTCTATTCCCCCATTTATTTTGATTGGAATATCTTTAGGGAGGTACATGTAATGCACCCTTAAATTGTTGGGTAAAAGTTTTTAAATTGAACAAGTCTCAGCTGATATTGCAGTTTCATCATTATTCAGTTCTTTATTTAAGGTTGTTGTCATTAAGCTCATGTTCGGAAATGACTATAAGAAGATACAGAAGCTAAAAGCTAGTAACTTAAAAGTCAAATCTACCTCCAGAAACGCTTCCAAACAAACTGTAACCCTAAATCTCGAATGCTTTCCACGTGCTGACATGACTTTGTTAGGTCTTAATATTTTGGAAATCTAATGTATGAACTTTTATTTTGATTGGTTGGATACAGCTGTTTGTTGATAGGAACT >Glyma20g31840.5 sequence type=transcript gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGAATGGTGTATAGTGCGGGAGACAGTAGCAAATAGAACCAAGCCAACAATGGGTACCGACAAGCCAAACCGGGTCGGGTCGTTTATATACATCACTGATCCGATTCGTGTTTTCCTCTCCGGCGCGTCGAAAGACGCGACTCTCTCCGACGAGCTTCGACGAACATCCTCCGATCTGCTCCTCCAATCGGATGTACCCTACGCGCAACTTCGCGCTGTGTGGATGGCCTCTGATCCATCCACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGAAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCCGGAACCGTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTCAATCACAGTCCTGCCATGAATGCTGCTGGAGGAATTCTGGGGTTGGTTGGTGCCATGTTTGTGGAAACTTTCCTTTTCATTATTAGAAGTTCCAATACAGATGCCAACAAAACAAGAAAATCCAGTCAGAAGGCGAGATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAGACATGATCAGGTTGGTTATTTTCCGGTTTTACATTGGGTAGAAAAACAAAATCATATAATGTAGTCCCTTGTAATTGTAAACACTGTTCTCATTTATAAATAATGAAGATCCAAGAAGTATGGACACTTCTAAACAATTGGCCATGTCATGTCAAAACTATGTGAGATACATGTCCATGTCAGATACTGCATAAACACTTCCATACTTCTAATTGCAATTATAATTTTATACTTTTAATTTTTAAACCTTCAAACAATTGCTAATTAGAATATCACAATAGTTAAATAATTTTTTGTATTTTACCTTATCATGTTTATACCAACTAAGCTTATTTTTAAAACACATTCTCTCATGATTTAAAATTTGTATTTTATATATTAACTTTATACTTACTAGGGCAAAAACAGGCACGAATACTGAAAATACTAAATGTATATGTAATTGGTGTGACCTATTTGAAAAGATGTAACTGGAATTGGAAGTTAAAATAAAATTGAAATGATGTAACTAAAATTGGAAGTTTGAAATTTTGGGGGGTAAAAATGTCCATTAGAAAAGTGGACACCAAATGGGATTATTTCCTTTATAATAGTTATAGATTCTATTTATTATATATAGATGTGTAACGTGTTGTGTCCTATAATTTATAAAATTTGCCATATTCCCGTATCTGTAATGTATCTTATCCATGTCCCATATCGAATTTGTGCTTTCCTAGCTAAAGATGACATCTACCTTGCATTCCAACAAGGTGTTGGACATATCTGGATCCTCATAAGTACTGTCGTAATGTTATGCTCTGATCTCAACCTGGCTTGACATGAGCACCTTGCCACCCCTCCCTGCACCAGTGAAGAAAGAAGTAGCAATTCTTTAACTGACCCGAGTATTTCATGATTTTTGGCCTCTTGGGATGTGGTTGAGCATTATGCAGGGATGTTTCTATTCCCCCATTTATTTTGATTGGAATATCTTTAGGGAGGTACATGTAATGCACCCTTAAATTGTTGGGTAAAAGTTTTTAAATTGAACAAGTCTCAGCTGATATTGCAGTTTCATCATTATTCAGTTCTTTATTTAAGGTTGTTGTCATTAAGCTCATGTTCGGAAATGACTATAAGAAGATACAGAAGC
>Glyma20g31840.3 sequence type=CDS gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACCGACAAGCCAAACCGGGTCGGGTCGTTTATATACATCACTGATCCGATTCGTGTTTTCCTCTCCGGCGCGTCGAAAGACGCGACTCTCTCCGACGAGCTTCGACGAACATCCTCCGATCTGCTCCTCCAATCGGATGTACCCTACGCGCAACTTCGCGCTGTGTGGATGGCCTCTGATCCATCCACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGAAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCCGGAACCGTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTCAATCACAGTCCTGCCATGAATGCTGCTGGAGGAATTCTGGGGTTGGTTGGTGCCATGTTTGTGGAAACTTTCCTTTTCATTATTAGAAGTTCCAATACAGATGCCAACAAAACAAGAAAATCCAGTCAGAAGGCGAGATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAG >Glyma20g31840.4 sequence type=CDS gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACCGACAAGCCAAACCGGGTCGGGTCGTTTATATACATCACTGATCCGATTCGTGTTTTCCTCTCCGGCGCGTCGAAAGACGCGACTCTCTCCGACGAGCTTCGACGAACATCCTCCGATCTGCTCCTCCAATCGGATGTACCCTACGCGCAACTTCGCGCTGTGTGGATGGCCTCTGATCCATCCACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGAAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCCGGAACCGTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTCAATCACAGTCCTGCCATGAATGCTGCTGGAGGAATTCTGGGGTTGGTTGGTGCCATGTTTGTGGAAACTTTCCTTTTCATTATTAGAAGTTCCAATACAGATGCCAACAAAACAAGAAAATCCAGTCAGAAGGCGAGATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAG >Glyma20g31840.5 sequence type=CDS gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACCGACAAGCCAAACCGGGTCGGGTCGTTTATATACATCACTGATCCGATTCGTGTTTTCCTCTCCGGCGCGTCGAAAGACGCGACTCTCTCCGACGAGCTTCGACGAACATCCTCCGATCTGCTCCTCCAATCGGATGTACCCTACGCGCAACTTCGCGCTGTGTGGATGGCCTCTGATCCATCCACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGAGAGAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGACATAGCAGAGAGAAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCCGGAACCGTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTCAATCACAGTCCTGCCATGAATGCTGCTGGAGGAATTCTGGGGTTGGTTGGTGCCATGTTTGTGGAAACTTTCCTTTTCATTATTAGAAGTTCCAATACAGATGCCAACAAAACAAGAAAATCCAGTCAGAAGGCGAGATCATCCTTTTCAACATCCGGGATTAAGAAAAACCAGTAG
>Glyma20g31840.3 sequence type=predicted peptide gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTDKPNRVGSFIYITDPIRVFLSGASKDATLSDELRRTSSDLLLQSDVPYAQLRAVWMASDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVPEPFSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVETFLFIIRSSNTDANKTRKSSQKARSSFSTSGIKKNQ* >Glyma20g31840.4 sequence type=predicted peptide gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTDKPNRVGSFIYITDPIRVFLSGASKDATLSDELRRTSSDLLLQSDVPYAQLRAVWMASDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVPEPFSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVETFLFIIRSSNTDANKTRKSSQKARSSFSTSGIKKNQ* >Glyma20g31840.5 sequence type=predicted peptide gene model=Glyma20g31840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTDKPNRVGSFIYITDPIRVFLSGASKDATLSDELRRTSSDLLLQSDVPYAQLRAVWMASDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVPEPFSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVETFLFIIRSSNTDANKTRKSSQKARSSFSTSGIKKNQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
