Glyma20g31810 - SoyBase

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Report for Sequence Feature Glyma20g31810

Feature Type:	gene_model
Chromosome:	Gm20
Start:	40423269
stop:	40426995
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g31810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03040	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 2 \| chr5:710380-712406 REVERSE LENGTH=461	SoyBase	E_val: 2.00E-88	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7I9M2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7I9M2_MEDTR	SoyBase	E_val: 1.00E-178	ISS
UniRef100_I1NHD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHD5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g31810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g31810

Paralog	Evidence	Comments
Glyma10g35721	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g31810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g177900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g31810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g31810

Limit To All Plant Sequences

>Glyma20g31810.2   sequence type=transcript   gene model=Glyma20g31810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAATATTTCAGTTTTGTCCTCTTTCTCGTGCTTTTTGTCCCTTCTGATCCTTGTATTTGTCCTTTTTGAATCATGCTATCTGGGTTTGATGTTCTTTTGAATTATGCTATCTGGGTTCTTCTCATTGTACATTTTGTATCTTTCATTTTTCTTTGTTGTTAGTTTTTCCATGAAATAGGTGTTCACAATTGGTGCTTTTGAACTTTTGATGGCTTTTTGAATGATGCTTTTTTTTTTGGCTTCTTCCTCGTTGGATCATTCCATCATACATTAATGAATCGGATGAAAGTCATTGCCTTTTCTTTCTAGAAAGTGGTGTTTTTTTTTTATATTAGTTTCGGTTTCTAGTCCTTTTCATTAATGGGGTTTGAATGACATTTATGGAATACATTAGTTATACATTTGCTTTCAGCATTTATGATCTCTCCATTTTGAGGTTCTATTCAATTTTCCATGACTCTTCCCTTTTACAACTCCATGCAATGAATTCTGTTTTCTATCACGATTCCCTCTGAATTCAACATGCTTTAAATTGAAACACAAGGAATCTAATTGCTTCTGCCACAACTTTTATTCATCTATTACTCTCATTTTATGTTATTTGACTTTCCTGACTGAAGCTTGTTATTCATTTTATGCTATTTGACTTTTTATTAATTTTTTTTTCGTTAATCAAGATTAAAGGAACTCCAAATGGGGAGGAAAGGGGGTTGGTTTTCTGCAGTGAAGAGAGTTTTTGTTTCTGATTCCAAAAAGGAACAGAAACACCATCATCATCATCATCATCATAAGTCAAAGTTAGGATGTTTTGGGACTCATCACTATGAGGATCTAGAAGGAGCACCAATTGCCGTTGTTCCTTCACTTCCACCAAGAAAAGATCCCAAACCAATAAGTGAGGCAGAGAATAATGAACAGAGCAGGCAAGCCTTTTCTTTGGTTTTGGCTACTGCTGTGGCCGCCGGGGCTGCTGTTGCTGCAGAGGTTGCTTGTCTCACAAACACGCCTCGTTCCAATGGAAAAGCGAATCAAGAAATGGCAGCTATCAAGATTCAAACAGCTTACCGTGGATATTTGGCAAGAAGATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGGTTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAGGCTCTTCATAGGCAACTGCAGCAGAAACGTGAAAAGGAATTTGACAAGTCGCAAGCTAATATTGGAGAGAAGTGGGATGATAGCTTGAAATCAAAGGAGCAAGTTGAAGCCAAATTGTTGAACAGACAAGTAGCAGCTATGAGAAGAGAAAAGGCTTTGGTCTATGCATCAACACATCAGCAAACGTGGAGGAACTCTTCAAAATCTGCTACAAATGCAGCATTTATGGATCCAAACAATCCCCACTGGGGCTGGAATTGGCTAGAGCGATGGATGGCTGCAAGGCCATGGGAGGGTCAAAACACTACATACCACATTGGCCATGCATCTGCCAAAAGTGTTGCAAGCCAAACCATGTCAGTTGGTGAAATCACAAAATTGTATTCTCTCCGTGATCAGAATAATGATATCAAAATTTCCCCAGCAAGCCAAAAACCAACCTGCCCTCCCAGCCACAATTCTCCTTCAACAACAGCCTCAAAGGTCCCATTAGCCAATGGAGCAAAGGCAAAGGTACTATCAAGTCCAAGGGGTGGTTCATGGGGTAGTGATGGTGACTCAAAAAACATGTTCAGCAAAACCTCAGAAAACAGCCGCAGGCACAGCATTGGAGTGTCTCAAGTGAGAGATGATGAGAGCAATTCAAGCTCATCACCGTCCACAAAGGTTGCAACAAAGGCAAAGTCATCATCATCCAAAGTGAGAAGTGCATTGGTTGGCGAACATAGTAATGGAACACCTGAAAAAGCAGCTTCTGCTCTCATAAAGAAGAGGCTTTCTTTCCCTGCTTCTCCAGCCGGTACAAGAAGGTATGCTGTTTCAACTAGACCGGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGCTACCATCCCTGAGGAGAAAGTGAGAATGAGAAATGGAGGGAGCAGGTAGGGATGCATCATGCTCATGCGTGCCATTGGTGTACTTAGAATAGAAATATGAATGAAGATGAATCAAATAAAAGATGGTATCATCTTTTTATAGTTGTCTCTATCAACTTTTCTTCACAAGCCATACTGTTGGTGCCATGGGGGAGGAAATGGAATAAAATTTGGCTGATCAAGTAATCATTTTATTCCTACAGTTGTCTTCATAATCAATGTAGGCAACTTCTTCTTTTACTTCTTAACTGGTTATAGTAGTGCTATTTGTGATGTTATAACAAGATTGGTTTTGGGGGTGATACTAGTTTGATGACAATATATATTCTTTATGTAATTACTCATTAATTATTCTGTTTGTAAAGTATTTATCAATTATTCAAGGTAAATTGCTTTCTTGTACACGGTTCTGG

Coding sequences of Glyma20g31810

Limit To All Plant Sequences

>Glyma20g31810.1   sequence type=CDS   gene model=Glyma20g31810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGAAAGGGGGTTGGTTTTCTGCAGTGAAGAGAGTTTTTGTTTCTGATTCCAAAAAGGAACAGAAACACCATCATCATCATCATCATCATAAGTCAAAGTTAGGATGTTTTGGGACTCATCACTATGAGGATCTAGAAGGAGCACCAATTGCCGTTGTTCCTTCACTTCCACCAAGAAAAGATCCCAAACCAATAAGTGAGGCAGAGAATAATGAACAGAGCAGGCAAGCCTTTTCTTTGGTTTTGGCTACTGCTGTGGCCGCCGGGGCTGCTGTTGCTGCAGAGGTTGCTTGTCTCACAAACACGCCTCGTTCCAATGGAAAAGCGAATCAAGAAATGGCAGCTATCAAGATTCAAACAGCTTACCGTGGATATTTGGCAAGAAGATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGGTTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAGGCTCTTCATAGGCAACTGCAGCAGAAACGTGAAAAGGAATTTGACAAGTCGCAAGCTAATCAGATTGGAGAGAAGTGGGATGATAGCTTGAAATCAAAGGAGCAAGTTGAAGCCAAATTGTTGAACAGACAAGTAGCAGCTATGAGAAGAGAAAAGGCTTTGGTCTATGCATCAACACATCAGCAAACGTGGAGGAACTCTTCAAAATCTGCTACAAATGCAGCATTTATGGATCCAAACAATCCCCACTGGGGCTGGAATTGGCTAGAGCGATGGATGGCTGCAAGGCCATGGGAGGGTCAAAACACTACATACCACATTGGCCATGCATCTGCCAAAAGTGTTGCAAGCCAAACCATGTCAGTTGGTGAAATCACAAAATTGTATTCTCTCCGTGATCAGAATAATGATATCAAAATTTCCCCAGCAAGCCAAAAACCAACCTGCCCTCCCAGCCACAATTCTCCTTCAACAACAGCCTCAAAGGTCCCATTAGCCAATGGAGCAAAGGCAAAGGTACTATCAAGTCCAAGGGGTGGTTCATGGGGTAGTGATGGTGACTCAAAAAACATGTTCAGCAAAACCTCAGAAAACAGCCGCAGGCACAGCATTGGAGTGTCTCAAGTGAGAGATGATGAGAGCAATTCAAGCTCATCACCGTCCACAAAGGTTGCAACAAAGGCAAAGTCATCATCATCCAAAGTGAGAAGTGCATTGGTTGGCGAACATAGTAATGGAACACCTGAAAAAGCAGCTTCTGCTCTCATAAAGAAGAGGCTTTCTTTCCCTGCTTCTCCAGCCGGTACAAGAAGGTATGCTGTTTCAACTAGACCGGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGCTACCATCCCTGAGGAGAAAGTGAGAATGAGAAATGGAGGGAGCAGGTAG

>Glyma20g31810.2   sequence type=CDS   gene model=Glyma20g31810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGAAAGGGGGTTGGTTTTCTGCAGTGAAGAGAGTTTTTGTTTCTGATTCCAAAAAGGAACAGAAACACCATCATCATCATCATCATCATAAGTCAAAGTTAGGATGTTTTGGGACTCATCACTATGAGGATCTAGAAGGAGCACCAATTGCCGTTGTTCCTTCACTTCCACCAAGAAAAGATCCCAAACCAATAAGTGAGGCAGAGAATAATGAACAGAGCAGGCAAGCCTTTTCTTTGGTTTTGGCTACTGCTGTGGCCGCCGGGGCTGCTGTTGCTGCAGAGGTTGCTTGTCTCACAAACACGCCTCGTTCCAATGGAAAAGCGAATCAAGAAATGGCAGCTATCAAGATTCAAACAGCTTACCGTGGATATTTGGCAAGAAGATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACATTGGTGCAAGGGCAATCTGTTCAACGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGGTTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAGGCTCTTCATAGGCAACTGCAGCAGAAACGTGAAAAGGAATTTGACAAGTCGCAAGCTAATATTGGAGAGAAGTGGGATGATAGCTTGAAATCAAAGGAGCAAGTTGAAGCCAAATTGTTGAACAGACAAGTAGCAGCTATGAGAAGAGAAAAGGCTTTGGTCTATGCATCAACACATCAGCAAACGTGGAGGAACTCTTCAAAATCTGCTACAAATGCAGCATTTATGGATCCAAACAATCCCCACTGGGGCTGGAATTGGCTAGAGCGATGGATGGCTGCAAGGCCATGGGAGGGTCAAAACACTACATACCACATTGGCCATGCATCTGCCAAAAGTGTTGCAAGCCAAACCATGTCAGTTGGTGAAATCACAAAATTGTATTCTCTCCGTGATCAGAATAATGATATCAAAATTTCCCCAGCAAGCCAAAAACCAACCTGCCCTCCCAGCCACAATTCTCCTTCAACAACAGCCTCAAAGGTCCCATTAGCCAATGGAGCAAAGGCAAAGGTACTATCAAGTCCAAGGGGTGGTTCATGGGGTAGTGATGGTGACTCAAAAAACATGTTCAGCAAAACCTCAGAAAACAGCCGCAGGCACAGCATTGGAGTGTCTCAAGTGAGAGATGATGAGAGCAATTCAAGCTCATCACCGTCCACAAAGGTTGCAACAAAGGCAAAGTCATCATCATCCAAAGTGAGAAGTGCATTGGTTGGCGAACATAGTAATGGAACACCTGAAAAAGCAGCTTCTGCTCTCATAAAGAAGAGGCTTTCTTTCCCTGCTTCTCCAGCCGGTACAAGAAGGTATGCTGTTTCAACTAGACCGGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGCTACCATCCCTGAGGAGAAAGTGAGAATGAGAAATGGAGGGAGCAGGTAG

Predicted protein sequences of Glyma20g31810

Limit To All Plant Sequences

>Glyma20g31810.1   sequence type=predicted peptide   gene model=Glyma20g31810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKGGWFSAVKRVFVSDSKKEQKHHHHHHHHKSKLGCFGTHHYEDLEGAPIAVVPSLPPRKDPKPISEAENNEQSRQAFSLVLATAVAAGAAVAAEVACLTNTPRSNGKANQEMAAIKIQTAYRGYLARRSLRGLRGLSRLKTLVQGQSVQRQAATTLQCMQTLSRLQSQVRARKVRMSEENQALHRQLQQKREKEFDKSQANQIGEKWDDSLKSKEQVEAKLLNRQVAAMRREKALVYASTHQQTWRNSSKSATNAAFMDPNNPHWGWNWLERWMAARPWEGQNTTYHIGHASAKSVASQTMSVGEITKLYSLRDQNNDIKISPASQKPTCPPSHNSPSTTASKVPLANGAKAKVLSSPRGGSWGSDGDSKNMFSKTSENSRRHSIGVSQVRDDESNSSSSPSTKVATKAKSSSSKVRSALVGEHSNGTPEKAASALIKKRLSFPASPAGTRRYAVSTRPGNVASNKSVANATIPEEKVRMRNGGSR*

>Glyma20g31810.2   sequence type=predicted peptide   gene model=Glyma20g31810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKGGWFSAVKRVFVSDSKKEQKHHHHHHHHKSKLGCFGTHHYEDLEGAPIAVVPSLPPRKDPKPISEAENNEQSRQAFSLVLATAVAAGAAVAAEVACLTNTPRSNGKANQEMAAIKIQTAYRGYLARRSLRGLRGLSRLKTLVQGQSVQRQAATTLQCMQTLSRLQSQVRARKVRMSEENQALHRQLQQKREKEFDKSQANIGEKWDDSLKSKEQVEAKLLNRQVAAMRREKALVYASTHQQTWRNSSKSATNAAFMDPNNPHWGWNWLERWMAARPWEGQNTTYHIGHASAKSVASQTMSVGEITKLYSLRDQNNDIKISPASQKPTCPPSHNSPSTTASKVPLANGAKAKVLSSPRGGSWGSDGDSKNMFSKTSENSRRHSIGVSQVRDDESNSSSSPSTKVATKAKSSSSKVRSALVGEHSNGTPEKAASALIKKRLSFPASPAGTRRYAVSTRPGNVASNKSVANATIPEEKVRMRNGGSR*

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