Glyma20g31641 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma20g31641): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma20g31641): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma20g31641

Feature Type:	gene_model
Chromosome:	Gm20
Start:	40249229
stop:	40253671
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g31641

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22700	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:8028323-8029878 REVERSE LENGTH=296	SoyBase	E_val: 4.00E-106	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0048564	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem I assembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
PTHR26312	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26312:SF36	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B9SLH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat protein, tpr, putative n=1 Tax=Ricinus communis RepID=B9SLH4_RICCO	SoyBase	E_val: 8.00E-114	ISS
UniRef100_UPI000233D9BC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D9BC related cluster n=1 Tax=unknown RepID=UPI000233D9BC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g31641

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g31641 not represented in the dataset	Glyma20g31641 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g31641

Paralog	Evidence	Comments
Glyma10g35950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g31641 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g176400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g31641

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g31641

Limit To All Plant Sequences

>Glyma20g31641.2   sequence type=transcript   gene model=Glyma20g31641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATCAAGAGGGTAATGTAACAACGATGTTCCCGTCCGAGGTGGCATTACTTGCTGGAGCAGGATAACCCAAACCGGAACAGAAGCAGAAGCGAAGATGGGTGGTTCCGTTTTCACTCACTTCCTCGTTCTCCCTTCCTCTTCTTCTCTCTCTTTTCCCACTCTCTTCCCATCCAAATTCCCCACCAAACCCATCAATGAATCCGTTCCCTTCACGCTTATCTGCAACCAATTCCCTTTCAAACTCACTACTTCGCGGCCTTCCCAATTCTCAGCTCCTCCTCGTTACTCATGCTCTGTAAAAAAGATAAAAGCTTCCGGAAGTCAGCAAACAGGATCCATACGACATGGAGACAACCTTGATGCAACGAAGAGCAGGAGTTTGCTGGAGAAGTTTCAGAGGAAAATGCCAATGGAATTCCTTAGCACCCTTTTCAACAAACAATCTATGTTGAGTGACTTTACAACCAAAGATATTGTAGATGGGGAAAGATCATCCAAATGGGTTTCAGCATTCCTCTTTGGACAAACTATATCAGTGATTTCTCCTGATGTTTCATATGCAAGCAGCTCAGCAAGAATAAATGAGATATATGAGGTTGGAGAGTTGTTTGATTTAAGCATCCAACTAATATACTTGGTATTGCTATTAGGTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGGTTAGATGACTTGTTTGATTGCTAACAAAGTAAATTAAATTTGAATTTTCTTTAAAAATAGGAGAATAATAGCATCTTTCTGCTGTTGAGTTCTAGTCAATAGTATTCTACCACTATTGACATATTCTAATAAAGAAATACTTGTAACACATTCTTTAGTATACTCTTTAAAACACACTATTATTAACCGGAATCACAAAATTATGTAGGTTTCACTATTTATCAACAATGAAGATTGTGTTAAATAAAGATTGTGTTAGTTAGTATGTTGTTAGTGCTCTTGATTCTGATAAGACT

Coding sequences of Glyma20g31641

Limit To All Plant Sequences

>Glyma20g31641.1   sequence type=CDS   gene model=Glyma20g31641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTTCCGTTTTCACTCACTTCCTCGTTCTCCCTTCCTCTTCTTCTCTCTCTTTTCCCACTCTCTTCCCATCCAAATTCCCCACCAAACCCATCAATGAATCCGTTCCCTTCACGCTTATCTGCAACCAATTCCCTTTCAAACTCACTACTTCGCGGCCTTCCCAATTCTCAGCTCCTCCTCGTTACTCATGCTCTGTAAAAAAGATAAAAGCTTCCGGAAGTCAGCAAACAGGATCCATACGACATGGAGACAACCTTGATGCAACGAAGAGCAGGAGTTTGCTGGAGAAGTTTCAGAGGAAAATGCCAATGGAATTCCTTAGCACCCTTTTCAACAAACAATCTATGTTGAGTGACTTTACAACCAAAGATATTGTAGATGGGGAAAGATCATCCAAATGGGTTTCAGCATTCCTCTTTGGACAAACTATATCAGTGATTTCTCCTGATGTTTCATATGCAAGCAGCTCAGCAAGAATAAATGAGATATATGAGGTTGGAGAGTTGTTTGATTTAAGCATCCAACTAATATACTTGGTATTGCTATTAGGTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGGTTTACAACGCTCTTGGTGTGAGCTATGTCCGCGATGGGAAAGTTGACAAAGGAATTGCTCAGTTTGAGACAGCTGTCAAGCTTCAACCAGGCTATGTCACAGCTTGGAACAATCTCGGTGATGCCTTTGAGAGTAAAAAGGACTACAAGTCTGCTCTAAAGGCATTTGAAGAAGTCCTACTATTTGATCCTAACAACAAGGTTGCCCGGCCTAGGAGAGATTCTTTGAAGGGACTTGTTGATGCAACCAAAGGAGTTACTGTCATCAAGTCAACAGAGAAGAAGTGA

>Glyma20g31641.2   sequence type=CDS   gene model=Glyma20g31641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTTCCGTTTTCACTCACTTCCTCGTTCTCCCTTCCTCTTCTTCTCTCTCTTTTCCCACTCTCTTCCCATCCAAATTCCCCACCAAACCCATCAATGAATCCGTTCCCTTCACGCTTATCTGCAACCAATTCCCTTTCAAACTCACTACTTCGCGGCCTTCCCAATTCTCAGCTCCTCCTCGTTACTCATGCTCTGTAAAAAAGATAAAAGCTTCCGGAAGTCAGCAAACAGGATCCATACGACATGGAGACAACCTTGATGCAACGAAGAGCAGGAGTTTGCTGGAGAAGTTTCAGAGGAAAATGCCAATGGAATTCCTTAGCACCCTTTTCAACAAACAATCTATGTTGAGTGACTTTACAACCAAAGATATTGTAGATGGGGAAAGATCATCCAAATGGGTTTCAGCATTCCTCTTTGGACAAACTATATCAGTGATTTCTCCTGATGTTTCATATGCAAGCAGCTCAGCAAGAATAAATGAGATATATGAGGTTGGAGAGTTGTTTGATTTAAGCATCCAACTAATATACTTGGTATTGCTATTAGGTTTGCTAGGGACTGGAACTTTCTTTGTGATTCGTCAAGTTCTTGTCCGCAGAGAACTTGACCTATCTGCCAAAGAGTTGCAGGAGCAAGTAAGAAGTGGTGATGCTGGTGCAACTGAGCTTTTTGAACTTGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGGTTAGATGA

Predicted protein sequences of Glyma20g31641

Limit To All Plant Sequences

>Glyma20g31641.1   sequence type=predicted peptide   gene model=Glyma20g31641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSVFTHFLVLPSSSSLSFPTLFPSKFPTKPINESVPFTLICNQFPFKLTTSRPSQFSAPPRYSCSVKKIKASGSQQTGSIRHGDNLDATKSRSLLEKFQRKMPMEFLSTLFNKQSMLSDFTTKDIVDGERSSKWVSAFLFGQTISVISPDVSYASSSARINEIYEVGELFDLSIQLIYLVLLLGLLGTGTFFVIRQVLVRRELDLSAKELQEQVRSGDAGATELFELGAVMLRRKFYPAATKFLLQAIEKWDGDNPDLAQVYNALGVSYVRDGKVDKGIAQFETAVKLQPGYVTAWNNLGDAFESKKDYKSALKAFEEVLLFDPNNKVARPRRDSLKGLVDATKGVTVIKSTEKK*

>Glyma20g31641.2   sequence type=predicted peptide   gene model=Glyma20g31641   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSVFTHFLVLPSSSSLSFPTLFPSKFPTKPINESVPFTLICNQFPFKLTTSRPSQFSAPPRYSCSVKKIKASGSQQTGSIRHGDNLDATKSRSLLEKFQRKMPMEFLSTLFNKQSMLSDFTTKDIVDGERSSKWVSAFLFGQTISVISPDVSYASSSARINEIYEVGELFDLSIQLIYLVLLLGLLGTGTFFVIRQVLVRRELDLSAKELQEQVRSGDAGATELFELGAVMLRRKFYPAATKFLLQAIEKWDGDNPDLAQVR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain