SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65280 | AT | Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein | chr1:24245501-24248521 FORWARD LENGTH=588 | SoyBase | E_val: 0 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0007346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| KOG4188 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR15606 | Panther | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED | JGI | ISS | |
| PTHR15606:SF1 | Panther | gb def: putative protein [arabidopsis thaliana] | JGI | ISS | |
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| PF12572 | PFAM | Protein of unknown function (DUF3752) | JGI | ISS | |
| UniRef100_O80799 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: T8F5.5 protein n=1 Tax=Arabidopsis thaliana RepID=O80799_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D9B6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D9B6 related cluster n=1 Tax=unknown RepID=UPI000233D9B6 | SoyBase | E_val: 0 | ISS |
|
Glyma20g31560 not represented in the dataset |
Glyma20g31560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g36030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g175700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g31560.4 sequence type=transcript gene model=Glyma20g31560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGACAGCAGAAAGAAGCACCGTCGTGTGCAAGACTCGCCGTCTTCCTCATCCTCTTCGTGCTCGGACTCCGACGACTCTTCGCGGCGGCGGCGGCGGAGGCGGCGCGAGAAGGAGATGCTCAGAAAGAGCGAGGAAAAGGAGGAGCGAAGGAGGAAGAAGAGAGACAGAGAGAGGAAAAAGAAGAAAAAGAGGCTCCACGATTCCGATGACTCCTGCTCTTCGGAGGAGGAAGACGAACAACCTAGTGTTCAGCCTGAAACTGTCATAACTGAAATGATGAAAGAGTTTCCAAATGTCGGCAACGATTTGAAGCAGCTCTTGCAAATGATTGATGATGGGCAAGCTGTTGACATAAAGGGTATATCAGAAAAGTCTTTAGCGAAGCATTTGAAAAAGCTGTTCCTTTCGTTAAACCTTATGGAGAATGGAGATAGGGTTTTCTTACTGCATTCTAAAGCTCGCCCTACTTTGGATGTTGTTTTCCCTCTCATTCAATCCTATATGAATATGAATCCCATGAATGAGCAAGCTGATACTTCCGCACCAATGGTGGATGACCATGCAACAGCAGCTCCAGAGGATCATTCTGTTGGTCCTAGAAGAAGGATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAAATTAACAGAGGCACAGACTGAGCTCAGAGATGCCGAATTGGACGATGATACTGAACTATTTGTAGGACCTCCACCACCAGCTCTAGTTTCTGAAGCAGAATCAGCTAATGAAGCAGAGCGTTTTGAAGAGGTAACCAGGATCATGGAAGTTGAGGCAGACAGCCCATATGATGTTCTAGGAGTTAACCATAATATGTCCAGTGACAATATAAAGAAAAAGTACTGGAAGATGTCACTATTGGTTCATCCAGATAAATGCTCTCATCCACAAGCTCACCAGGCTTTTATTAAGTTAAAAAAAGGTTTCAAAGAGTTCCCAGGTCCCAAAAAGGGGGCCCTGCTAAGAGGGGGGAAAGCAATGGATGAGAAAATCAAACTCAAGCAAGAACAAGAGCAATTTCAGGCTGAACTTAAAACCATGCGTGAGGCTGCACTGTGGAGAAGATCTCAAGGTATTTCCATGGAGGGTGATGAAGAGCTTCTGGCACAGACAGAGGTTAAAGTGGAACCAAAAAGGGATGAGTGGATGACAACACTACCTCCAGAAAGGAAACCTGGTGGTATGACTATGCACTCGACCAAGTTTAGCCGGGGTCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAATTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGATGAGAAAAGGGCTAGTGCGGATGCAGAATTGGTGGACAAATACAATAAAGCAAAACGGTCAAAAACATTGGTGCAGAAGTATCAAGAAGAGGCTGCTAGCAAATCCAAGAAAAAGTCCAAGGAAGTGAAGCAACAGCTAGAGAAGGAAGACTGGGTGGGTCAACATCCATGGAAGCCATGGGACCGTGAAAAGGATCTGACAGCTGGAAGGAAAACTGTTAATTTTGATTCAGAAAGCATGACTAAGAACTTATCTTCAAGGTTTTCTTCTGGAAACTTTCAGAGGAACTTCCTTTGATTTGATTTAGTTCGTGTTTCATATGCTAAGAGCCCTTTTGCCTGGACAACATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGGTTAGTTTCTGTCATTCCTCACGTGTATTATGTTGATTTTCTTTTCTTGATTAACTATATCATAGGCTAACTGATTCTCTTTTCTACGCATGGATGCAGTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTATAATTATGCAATTGCATGACTGACAAATATTTTCTGAAGAAGTTTGTACAATAAATGGCCTAATTCTTATTTCCATAACATATAAAGATGCATATCTAATTATCTACCACCAAACATGTTTATCTGAAGTATTTATGTTTGTTGTACATGTGGTTATAACTTGTGAGAAATAGTGGACATAGTGGTTCATACGGTACGGCATCTGAGAATTGCTTTTATATATATATATATATAGCACTGTCATCTTCTTGAAAAGGTTCAATTACATTTTTCCCGTTTATTATAGTTGTACGTGAGTTCTTAATTTTATTG
>Glyma20g31560.3 sequence type=CDS gene model=Glyma20g31560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGACAGCAGAAAGAAGCACCGTCGTGTGCAAGACTCGCCGTCTTCCTCATCCTCTTCGTGCTCGGACTCCGACGACTCTTCGCGGCGGCGGCGGCGGAGGCGGCGCGAGAAGGAGATGCTCAGAAAGAGCGAGGAAAAGGAGGAGCGAAGGAGGAAGAAGAGAGACAGAGAGAGGAAAAAGAAGAAAAAGAGGCTCCACGATTCCGATGACTCCTGCTCTTCGGAGGAGGAAGACGAACAACCTAGTGTTCAGCCTGAAACTGTCATAACTGAAATGATGAAAGAGTTTCCAAATGTCGGCAACGATTTGAAGCAGCTCTTGCAAATGATTGATGATGGGCAAGCTGTTGACATAAAGGGTATATCAGAAAAGTCTTTAGCGAAGCATTTGAAAAAGCTGTTCCTTTCGTTAAACCTTATGGAGAATGGAGATAGGGTTTTCTTACTGCATTCTAAAGCTCGCCCTACTTTGGATGTTGTTTTCCCTCTCATTCAATCCTATATGAATATGAATCCCATGAATGAGCAAGCTGATACTTCCGCACCAGTGCCTGAATCAAGTTCAGTTCCAATAGATACTGGAAATAAACAGATGGTGGATGACCATGCAACAGCAGCTCCAGAGGATCATTCTGTTGGTCCTAGAAGAAGGATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAAATTAACAGAGGCACAGACTGAGCTCAGAGATGCCGAATTGGACGATGATACTGAACTATTTGTAGGACCTCCACCACCAGCTCTAGTTTCTGAAGCAGAATCAGCTAATGAAGCAGAGCGTTTTGAAGAGGTAACCAGGATCATGGAAGTTGAGGCAGACAGCCCATATGATGTTCTAGGAGTTAACCATAATATGTCCAGTGACAATATAAAGAAAAAGTACTGGAAGATGTCACTATTGGTTCATCCAGATAAATGCTCTCATCCACAAGCTCACCAGGCTTTTATTAAGTTAAAAAAAGGTTTCAAAGAGTTCCCAGGTCCCAAAAAGGGGGCCCTGCTAAGAGGGGGGAAAGCAATGGATGAGAAAATCAAACTCAAGCAAGAACAAGAGCAATTTCAGGCTGAACTTAAAACCATGCGTGAGGCTGCACTGTGGAGAAGATCTCAAGGTATTTCCATGGAGGGTGATGAAGAGCTTCTGGCACAGACAGAGGTTAAAGTGGAACCAAAAAGGGATGAGTGGATGACAACACTACCTCCAGAAAGGAAACCTGGTGGTATGACTATGCACTCGACCAAGTTTAGCCGGGGTCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAATTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGATGAGAAAAGGGCTAGTGCGGATGCAGAATTGGTGGACAAATACAATAAAGCAAAACGGTCAAAAACATTGGTGCAGAAGTATCAAGAAGAGGCTGCTAGCAAATCCAAGAAAAAGTCCAAGGAAGTGAAGCAACAGCTAGAGAAGGAAGACTGGGTGGGTCAACATCCATGGAAGCCATGGGACCGTGAAAAGGATCTGACAGCTGGAAGGAAAACTGTTAATTTTGATTCAGAAAGCATGACTAAGAACTTATCTTCAAGGTTTTCTTCTGGAAACTTTCAGAGGAACTTCCTTTGA >Glyma20g31560.4 sequence type=CDS gene model=Glyma20g31560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGACAGCAGAAAGAAGCACCGTCGTGTGCAAGACTCGCCGTCTTCCTCATCCTCTTCGTGCTCGGACTCCGACGACTCTTCGCGGCGGCGGCGGCGGAGGCGGCGCGAGAAGGAGATGCTCAGAAAGAGCGAGGAAAAGGAGGAGCGAAGGAGGAAGAAGAGAGACAGAGAGAGGAAAAAGAAGAAAAAGAGGCTCCACGATTCCGATGACTCCTGCTCTTCGGAGGAGGAAGACGAACAACCTAGTGTTCAGCCTGAAACTGTCATAACTGAAATGATGAAAGAGTTTCCAAATGTCGGCAACGATTTGAAGCAGCTCTTGCAAATGATTGATGATGGGCAAGCTGTTGACATAAAGGGTATATCAGAAAAGTCTTTAGCGAAGCATTTGAAAAAGCTGTTCCTTTCGTTAAACCTTATGGAGAATGGAGATAGGGTTTTCTTACTGCATTCTAAAGCTCGCCCTACTTTGGATGTTGTTTTCCCTCTCATTCAATCCTATATGAATATGAATCCCATGAATGAGCAAGCTGATACTTCCGCACCAATGGTGGATGACCATGCAACAGCAGCTCCAGAGGATCATTCTGTTGGTCCTAGAAGAAGGATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAAATTAACAGAGGCACAGACTGAGCTCAGAGATGCCGAATTGGACGATGATACTGAACTATTTGTAGGACCTCCACCACCAGCTCTAGTTTCTGAAGCAGAATCAGCTAATGAAGCAGAGCGTTTTGAAGAGGTAACCAGGATCATGGAAGTTGAGGCAGACAGCCCATATGATGTTCTAGGAGTTAACCATAATATGTCCAGTGACAATATAAAGAAAAAGTACTGGAAGATGTCACTATTGGTTCATCCAGATAAATGCTCTCATCCACAAGCTCACCAGGCTTTTATTAAGTTAAAAAAAGGTTTCAAAGAGTTCCCAGGTCCCAAAAAGGGGGCCCTGCTAAGAGGGGGGAAAGCAATGGATGAGAAAATCAAACTCAAGCAAGAACAAGAGCAATTTCAGGCTGAACTTAAAACCATGCGTGAGGCTGCACTGTGGAGAAGATCTCAAGGTATTTCCATGGAGGGTGATGAAGAGCTTCTGGCACAGACAGAGGTTAAAGTGGAACCAAAAAGGGATGAGTGGATGACAACACTACCTCCAGAAAGGAAACCTGGTGGTATGACTATGCACTCGACCAAGTTTAGCCGGGGTCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAATTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGATGAGAAAAGGGCTAGTGCGGATGCAGAATTGGTGGACAAATACAATAAAGCAAAACGGTCAAAAACATTGGTGCAGAAGTATCAAGAAGAGGCTGCTAGCAAATCCAAGAAAAAGTCCAAGGAAGTGAAGCAACAGCTAGAGAAGGAAGACTGGGTGGGTCAACATCCATGGAAGCCATGGGACCGTGAAAAGGATCTGACAGCTGGAAGGAAAACTGTTAATTTTGATTCAGAAAGCATGACTAAGAACTTATCTTCAAGGTTTTCTTCTGGAAACTTTCAGAGGAACTTCCTTTGA
>Glyma20g31560.3 sequence type=predicted peptide gene model=Glyma20g31560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDSRKKHRRVQDSPSSSSSSCSDSDDSSRRRRRRRREKEMLRKSEEKEERRRKKRDRERKKKKKRLHDSDDSCSSEEEDEQPSVQPETVITEMMKEFPNVGNDLKQLLQMIDDGQAVDIKGISEKSLAKHLKKLFLSLNLMENGDRVFLLHSKARPTLDVVFPLIQSYMNMNPMNEQADTSAPVPESSSVPIDTGNKQMVDDHATAAPEDHSVGPRRRMIGPAMPSVELLAAAAKLTEAQTELRDAELDDDTELFVGPPPPALVSEAESANEAERFEEVTRIMEVEADSPYDVLGVNHNMSSDNIKKKYWKMSLLVHPDKCSHPQAHQAFIKLKKGFKEFPGPKKGALLRGGKAMDEKIKLKQEQEQFQAELKTMREAALWRRSQGISMEGDEELLAQTEVKVEPKRDEWMTTLPPERKPGGMTMHSTKFSRGPKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEATALASNEEDEKRASADAELVDKYNKAKRSKTLVQKYQEEAASKSKKKSKEVKQQLEKEDWVGQHPWKPWDREKDLTAGRKTVNFDSESMTKNLSSRFSSGNFQRNFL* >Glyma20g31560.4 sequence type=predicted peptide gene model=Glyma20g31560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDSRKKHRRVQDSPSSSSSSCSDSDDSSRRRRRRRREKEMLRKSEEKEERRRKKRDRERKKKKKRLHDSDDSCSSEEEDEQPSVQPETVITEMMKEFPNVGNDLKQLLQMIDDGQAVDIKGISEKSLAKHLKKLFLSLNLMENGDRVFLLHSKARPTLDVVFPLIQSYMNMNPMNEQADTSAPMVDDHATAAPEDHSVGPRRRMIGPAMPSVELLAAAAKLTEAQTELRDAELDDDTELFVGPPPPALVSEAESANEAERFEEVTRIMEVEADSPYDVLGVNHNMSSDNIKKKYWKMSLLVHPDKCSHPQAHQAFIKLKKGFKEFPGPKKGALLRGGKAMDEKIKLKQEQEQFQAELKTMREAALWRRSQGISMEGDEELLAQTEVKVEPKRDEWMTTLPPERKPGGMTMHSTKFSRGPKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEATALASNEEDEKRASADAELVDKYNKAKRSKTLVQKYQEEAASKSKKKSKEVKQQLEKEDWVGQHPWKPWDREKDLTAGRKTVNFDSESMTKNLSSRFSSGNFQRNFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
