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Report for Sequence Feature Glyma20g31530

Feature Type:gene_model
Chromosome:Gm20
Start:40148870
stop:40152114
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G35680AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L21 | chr1:13208777-13210246 FORWARD LENGTH=220 SoyBaseE_val: 3.00E-52ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG1686 KOG Mitochondrial/chloroplast ribosomal L21 protein JGI ISS
PTHR21349Panther 50S RIBOSOMAL PROTEIN L21 JGI ISS
PF00829PFAM Ribosomal prokaryotic L21 protein JGI ISS
UniRef100_B9SLE8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L21, putative n=1 Tax=Ricinus communis RepID=B9SLE8_RICCO SoyBaseE_val: 4.00E-59ISS
UniRef100_C6TFY0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFY0_SOYBN SoyBaseE_val: 2.00E-156ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g31530 not represented in the dataset

Glyma20g31530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g36070 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g175300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma20g31530.1   sequence type=CDS   gene model=Glyma20g31530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACTGCCACTGTTTCAATTTCAACTTTATGCGCTACTTTCGGAACCCATTGCGCCATTTCCCACAACCCAAAACCTCTATTTTCTCAACCTTTCAATCTCAATCACTTTCCTTCTAACTCTTACAAGCTCGCTTTCTCGCCTCGCTCACCTCTTTCACCCCTTCCCAAGGCCTCTGAATCCGCGGTAGCCGAAACCGAACCCGGTTCGGCCGAGCCCGAACCGGCCCAAATTTCCCCGGCCCAACCTCCCTCCTGGGAACCCGGTCTCTTCGCTGTCGTAATGATTGGCGGACGCCAATATATTGTTCACCCGGGGCGACATCTTACTGTTCAGAGGTTAAAAGGTGCTAATGTTAATGATAAGATTGCCTTACACAAGGTTTTACTGGTTGGCACTGATACATCTTGCTACATTGGGAAACCAATTGTAACAAATGCTGTAGTATACGCAACGGTGGAAGAGCAGGGTCTAGACCCTAAAGTAATTGTCTTCAAATATAAAAAGAAGAAACATTATCGCAGAAACATTGGACACAGACAGCCAAATACACGTATACGGATAAATAGCATTATGGGCTATGAAAACTACCCAAAAGTTACTATGGACGATATCAAATCAGACGAACCCGAATCATGA

>Glyma20g31530.1   sequence type=predicted peptide   gene model=Glyma20g31530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATATVSISTLCATFGTHCAISHNPKPLFSQPFNLNHFPSNSYKLAFSPRSPLSPLPKASESAVAETEPGSAEPEPAQISPAQPPSWEPGLFAVVMIGGRQYIVHPGRHLTVQRLKGANVNDKIALHKVLLVGTDTSCYIGKPIVTNAVVYATVEEQGLDPKVIVFKYKKKKHYRRNIGHRQPNTRIRINSIMGYENYPKVTMDDIKSDEPES*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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