SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71860 | AT | Annotation by Michelle Graham. TAIR10: protein tyrosine phosphatase 1 | chr1:27026866-27028675 FORWARD LENGTH=340 | SoyBase | E_val: 3.00E-158 | ISS |
| GO:0000303 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to superoxide | SoyBase | N/A | ISS |
| GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0043407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0033550 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase tyrosine phosphatase activity | SoyBase | N/A | ISS |
| KOG0789 | KOG | Protein tyrosine phosphatase | JGI | ISS | |
| PTHR19134 | Panther | PROTEIN-TYROSINE PHOSPHATASE | JGI | ISS | |
| PTHR19134:SF28 | Panther | PROTEIN TYROSINE PHOSPHATASE | JGI | ISS | |
| PF00102 | PFAM | Protein-tyrosine phosphatase | JGI | ISS | |
| UniRef100_O82687 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine phosphatase 1 n=1 Tax=Glycine max RepID=O82687_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D9AE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D9AE related cluster n=1 Tax=unknown RepID=UPI000233D9AE | SoyBase | E_val: 0 | ISS |
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Glyma20g31390 not represented in the dataset |
Glyma20g31390 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g36220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g173700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g31390.3 sequence type=transcript gene model=Glyma20g31390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGTTAGCGCGTGTGTAAGAACGTTTGATTAGTAACTCTGGTTAGAAGGAGCATAATAAACCTGCAATTGTTACAGCAATATAAAACGGAAAGACGAATAGCCAAGAGCGCGCACTCACTCACTCACTTATTGCGTCAACTGTACTCCATATCATATCAACTGGAGCTGGGGAACCTCGTCTCTACTCGCTCTCGTCCCCGCCGGAGATCCACCATGGCCGGCAACTCCGCCACCGCCACCGCCACCTCCTCCGCATTGTCTCCCGAGAATTTGAAATTCAATTTCTCCCCCGATAACCCCTCCCGAATCATCCTCACTTCGGATCAGGTCAACCACTGTACCCAAGCCCTCAACCTTCTGAAGGAGAAGCTCCACGATCCTCACGTGATCACTCAGGAGTTCGCACACTTGCAGGCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTATGACGCCGTCAATTTGAGCAAAAACCGATACACGGACGTTTTGCCATTTAACAAGAACAGGGTTGTTCTCAAATCAAGTACTGATTATAGGCCTGAAGCACAGGGGTATATCAATGCAAGCCTTATCTCGACCTCTTCCGCTGGAAATGTGTCCCACTTTATAGCCACACAAGGTCCACTTCCACATACTTGTGAGGATTTTTGGGAAATGATTACCCAATATCACTGCCCTGTGATTATCATGCTTACTAGGTTGGTGGATAATTACAAGATGGTAAAGTGTGTAGATTATTTTCAAGCTGAGGATGGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACTACTGAAACTTCACTGGTGTTGCGCCATTTGGAGGTGAACCATAGAGAGTATCCTGAATGGCCTGACCATGGAGTTCCAAAAGATACACTAGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCATCAAACCTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAGCATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGAGATATGTCTGCTGTACGCATTGCTAACACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAAACCCAGGACCAGTACATTTTCTGCTATAATGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAATAGGAGTAGAAGGGCAGGGAATTTGATTATTTTGTTAGAATTCTATTGGGGAACAGAATGGCATAATGACTACAAATTGTCCCTCCTGTTGCTATTTTTCATTTTCTAAATAAACCCCTCCCCTCCCCTCACCCTCCACGCCCCCACCTCCCTCTTTCATTTTATGATGAAGATCATAACTTTTAGGATGTTTTTGGCAGAACTAATTTGCAGTATATTTGGATTTATCTTATAAGCTTTCTAAAATACCTTATGAAAATATTTTAATCATATTTTTCATTTTTATTCTAGAAATAAATACCTATACGATAAATACTTATTTAATAAGCGCTTAGTTAAGGTATTTACTCCAAAAAAAGAAAGCACCTCGGAGTACTAGGCGTAGTTGTTAACTCTATCTATATGTACTAGGTGCATTCGATCGCTGGGAACCTCGTTTGAATCGTCTATGAGTA
>Glyma20g31390.2 sequence type=CDS gene model=Glyma20g31390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGCAACTCCGCCACCGCCACCGCCACCTCCTCCGCATTGTCTCCCGAGAATTTGAAATTCAATTTCTCCCCCGATAACCCCTCCCGAATCATCCTCACTTCGGATCAGGTCAACCACTGTACCCAAGCCCTCAACCTTCTGAAGGAGAAGCTCCACGATCCTCACGTGATCACTCAGGAGTTCGCACACTTGCAGGCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTATGACGCCGTCAATTTGAGCAAAAACCGATACACGGACGTTTTGCCATTTAACAAGAACAGGGTTGTTCTCAAATCAAGTACTGATTATAGGCCTGAAGCACAGGGGTATATCAATGCAAGCCTTATCTCGACCTCTTCCGCTGGAAATGTGTCCCACTTTATAGCCACACAAGGTCCACTTCCACATACTTGTGAGGATTTTTGGGAAATGATTACCCAATATCACTGCCCTGTGATTATCATGCTTACTAGGTTGGTGGATAATTACAAGATGGTAAAGTGTGTAGATTATTTTCAAGCTGAGGATGGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACTACTGAAACTTCACTGGTGTTGCGCCATTTGGAGGTGAACCATAGAGAGGTAGATGATGCACCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCAAAAGATACACTAGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCATCAAACCTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAGCATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGAGATATGTCTGCTGTACGCATTGCTAACACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAAACCCAGGACCAGTACATTTTCTGCTATAATGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAATAG >Glyma20g31390.3 sequence type=CDS gene model=Glyma20g31390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGCAACTCCGCCACCGCCACCGCCACCTCCTCCGCATTGTCTCCCGAGAATTTGAAATTCAATTTCTCCCCCGATAACCCCTCCCGAATCATCCTCACTTCGGATCAGGTCAACCACTGTACCCAAGCCCTCAACCTTCTGAAGGAGAAGCTCCACGATCCTCACGTGATCACTCAGGAGTTCGCACACTTGCAGGCGAACAGGATAACTCCGAGTGAGATGAGAAGAAGATGCACCGTCGCGTATGACGCCGTCAATTTGAGCAAAAACCGATACACGGACGTTTTGCCATTTAACAAGAACAGGGTTGTTCTCAAATCAAGTACTGATTATAGGCCTGAAGCACAGGGGTATATCAATGCAAGCCTTATCTCGACCTCTTCCGCTGGAAATGTGTCCCACTTTATAGCCACACAAGGTCCACTTCCACATACTTGTGAGGATTTTTGGGAAATGATTACCCAATATCACTGCCCTGTGATTATCATGCTTACTAGGTTGGTGGATAATTACAAGATGGTAAAGTGTGTAGATTATTTTCAAGCTGAGGATGGGCCTAGAGAAGTTGGTAATATTTCTATTATTGGTAAATGGGAGAACACTACTGAAACTTCACTGGTGTTGCGCCATTTGGAGGTGAACCATAGAGAGTATCCTGAATGGCCTGACCATGGAGTTCCAAAAGATACACTAGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCATCAAACCTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAGCATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGAGATATGTCTGCTGTACGCATTGCTAACACAATAGCTATGTTCAGGTCCCAGCGTATTGGAATGGTTCAAACCCAGGACCAGTACATTTTCTGCTATAATGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAATAG
>Glyma20g31390.2 sequence type=predicted peptide gene model=Glyma20g31390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNSATATATSSALSPENLKFNFSPDNPSRIILTSDQVNHCTQALNLLKEKLHDPHVITQEFAHLQANRITPSEMRRRCTVAYDAVNLSKNRYTDVLPFNKNRVVLKSSTDYRPEAQGYINASLISTSSAGNVSHFIATQGPLPHTCEDFWEMITQYHCPVIIMLTRLVDNYKMVKCVDYFQAEDGPREVGNISIIGKWENTTETSLVLRHLEVNHREVDDAPLSVLHIQYPEWPDHGVPKDTLAVREILKRLYHLPSNLGPIVVHCSAGIGRTGAYCTIHNTIQRILAGDMSAVRIANTIAMFRSQRIGMVQTQDQYIFCYNAIIDELEDLVSQQQ* >Glyma20g31390.3 sequence type=predicted peptide gene model=Glyma20g31390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNSATATATSSALSPENLKFNFSPDNPSRIILTSDQVNHCTQALNLLKEKLHDPHVITQEFAHLQANRITPSEMRRRCTVAYDAVNLSKNRYTDVLPFNKNRVVLKSSTDYRPEAQGYINASLISTSSAGNVSHFIATQGPLPHTCEDFWEMITQYHCPVIIMLTRLVDNYKMVKCVDYFQAEDGPREVGNISIIGKWENTTETSLVLRHLEVNHREYPEWPDHGVPKDTLAVREILKRLYHLPSNLGPIVVHCSAGIGRTGAYCTIHNTIQRILAGDMSAVRIANTIAMFRSQRIGMVQTQDQYIFCYNAIIDELEDLVSQQQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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