Report for Sequence Feature Glyma20g31270
Feature Type: gene_model
Chromosome: Gm20
Start: 39896986
stop: 39901287
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g31270
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G48100 AT
Annotation by Michelle Graham. TAIR10: Laccase/Diphenol oxidase family protein | chr5:19489530-19492582 REVERSE LENGTH=565
SoyBase E_val: 0 ISS
GO:0009809 GO-bp
Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process
SoyBase N/A ISS
GO:0009813 GO-bp
Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process
SoyBase N/A ISS
GO:0010023 GO-bp
Annotation by Michelle Graham. GO Biological Process: proanthocyanidin biosynthetic process
SoyBase N/A ISS
GO:0046274 GO-bp
Annotation by Michelle Graham. GO Biological Process: lignin catabolic process
SoyBase N/A ISS
GO:0046688 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to copper ion
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0052716 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity
SoyBase N/A ISS
KOG1263
KOG
Multicopper oxidases
JGI ISS
PTHR11709 Panther
MULTI-COPPER OXIDASE
JGI ISS
PTHR11709:SF9 Panther
LACCASE
JGI ISS
PF00394 PFAM
Multicopper oxidase
JGI ISS
PF07731 PFAM
Multicopper oxidase
JGI ISS
PF07732 PFAM
Multicopper oxidase
JGI ISS
UniRef100_G7J6C9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Laccase-15 n=1 Tax=Medicago truncatula RepID=G7J6C9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1NH79 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NH79_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g31270
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g31270
Paralog Evidence Comments
Glyma10g36320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g31270 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g172600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g31270
Coding sequences of Glyma20g31270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g31270.1 sequence type=CDS gene model=Glyma20g31270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAATGGCGCGTGGCAAGAATCTGTTCCTCCAAATTCTGTGGTGTTTTTCCTTGATCGGTCTTAGTTCCCAAGCACAGAATTACACTTTTGTTGTGAGAGAGGCCAAGTATACAAGACTCTGCTCCACAAAAAGCATATTGACTGTGAATGGAGAATTTCCCGGACCAACTATTAGAGCCAACAGAGGAGACACAATTTTTATAGATGTTTACAACAAGGGCAACTTCAATATTACTTTACACTGGCATGGGGTGAAGCAGCCAAGGAATCCATGGACAGATGGCCCTTCATACATCACTCAGTGCCCAATCCAACCTGGAAGGAAATTCACACAGAGGTTGATTTTTACTTTCGAGGAAGGGACCATATGGTGGCATGCTCATAGTGAATGGTTAAGAGCCACTGTCTATGGTGCTATCCACATATATCCAAATAAGAATAATCCCTACCCTTTTCCCCAACCCGATGCAGAGATTCCCATCATATTTGGAGAATGGTGGACGAGTGACGTCAACGAGGTCTTCAGACAATCTATGGAAACTGGAGGAGCCCCAAACGTATCTGATGCTCTCACTATAAATGGTCAACCTGGGGATCTGTTCCCTTGCTCAAGTCCAGAAACGTTCAAGCTAAATGTAGAGCAAGGCAAGACTTATCATCTCCGGGTTATCAACGCGGCACTGAATCTCATTCTCTTCTTCTCTGTTTCCCAACACAACCTCACTGTTGTTGGTGCTGATGCTGTGTACACAAGGCCACTGACAAGGGAATACATTTGCATATCACCGGGACAAGCAATGGATGTGTTGTTGCATGCCAACCAAGATCCTGGTCACTATTATCTGGCTGCAGCGGCATATTCAAGTGGCGTTGGTGTTGCCTTTGATAACACCACAACCACTGCTAGAGTTGAGTACAGTGGCAATTACACTCCACCTTCATCTCCTTCATTGCCTAACCTTCCCAACTTCAACGACACGCGTGCGGCGTTGAACTTCATTACAAACTTGAGAGGCTTACCTGAGAGAGCCCCCAGCCATGTCCCAACAAACATCACAACTCAAATAGTAACCACTATTTCAGTTAACACTTTGCCATGCCCTAATGGCAGAAACGACTGCCAGGGGCTAAATGGAACCATTTTCTCTGCTAGCATGAACAACATAAGCTTTCGAATCCCCACCATTGACATACTAAAAGCCTATTACTACCATATCAACGGGGTATACGAACCTGGATTTCCAACATTTCCACCGTTTATATTTAACTTCACTGGGGATTTTTTGCCTATAACACTGAATACACCAAAGCAAGGGACTAGGGTTAATGTGCTGAACTATGGTGCAACAGTTGAAATTGTTTTCCAAGGGACAAACCTTGTTGGCGGGATAGACCATCCCATCCATCTCCATGGCTACAGTTTCCATGTTGTTGGATATGGGCTAGGCAATTTTAACCAAAGCGTGGATCCCATGAATTTCAATCTCGTTGATCCTCCTTATTTGAATACAGTGATAGTGCCTATAAATGGCTGGGCTGCCATTAGGTTCGAGGCTGTAAACCCTGGAGTATGGTTTATGCACTGCCATCTAGAACGCCACCAATCTTGGGGTATGGAGACAGTTTTTATTGTGAAGGATGGAGAGTCTGAAAATCTAAGATTGCCACCACCACCGCCAGACATGCCCCCATGTTGA
Predicted protein sequences of Glyma20g31270
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g31270.1 sequence type=predicted peptide gene model=Glyma20g31270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKMARGKNLFLQILWCFSLIGLSSQAQNYTFVVREAKYTRLCSTKSILTVNGEFPGPTIRANRGDTIFIDVYNKGNFNITLHWHGVKQPRNPWTDGPSYITQCPIQPGRKFTQRLIFTFEEGTIWWHAHSEWLRATVYGAIHIYPNKNNPYPFPQPDAEIPIIFGEWWTSDVNEVFRQSMETGGAPNVSDALTINGQPGDLFPCSSPETFKLNVEQGKTYHLRVINAALNLILFFSVSQHNLTVVGADAVYTRPLTREYICISPGQAMDVLLHANQDPGHYYLAAAAYSSGVGVAFDNTTTTARVEYSGNYTPPSSPSLPNLPNFNDTRAALNFITNLRGLPERAPSHVPTNITTQIVTTISVNTLPCPNGRNDCQGLNGTIFSASMNNISFRIPTIDILKAYYYHINGVYEPGFPTFPPFIFNFTGDFLPITLNTPKQGTRVNVLNYGATVEIVFQGTNLVGGIDHPIHLHGYSFHVVGYGLGNFNQSVDPMNFNLVDPPYLNTVIVPINGWAAIRFEAVNPGVWFMHCHLERHQSWGMETVFIVKDGESENLRLPPPPPDMPPC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
