SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22750 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 186 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). | chr1:8050911-8052714 FORWARD LENGTH=257 | SoyBase | E_val: 3.00E-71 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF07343 | PFAM | Protein of unknown function (DUF1475) | JGI | ISS | |
| UniRef100_O64379 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT1G22750 protein n=2 Tax=Arabidopsis thaliana RepID=O64379_ARATH | SoyBase | E_val: 1.00E-68 | ISS |
| UniRef100_UPI0001CA9ACC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001CA9ACC related cluster n=1 Tax=unknown RepID=UPI0001CA9ACC | SoyBase | E_val: 0 | ISS |
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Glyma20g31141 not represented in the dataset |
Glyma20g31141 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g171400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g31141.2 sequence type=transcript gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGTACCTTATCCACAGCCAAGTTCAACTTATCCACAAAGAAACATCGTGGTTCCCTCGCATCAGCATCTTTCGTAATTTTCTTCACTGCTATTTACCATTGCCACACTCTCATTCTCGATGGCGGCGAAGATTTCATTGGCAATTGGTTTGAGAACTCTCTTCACTGTTTTGGGACTTCTCATGCTTGCTGTCTTTCTTTACACTGCCTTCACCGATGGTCTAGGTGTTCGCTTTCTCAAAGAACTTGTCAGACCGTGGATGGTAGCAACTTTGGTTTGTTTCTATATCAACATTGTAGCTTTTGCTGTCTGGATTGCTTACAAGGAATCAAACTTGATCAGCTCAATTCTGTGGATTGTTTTGATTGCCTTGTTAGGGAGTATCTTTACATCTGCCTATATTGTTGTGCAATTTCTGAAGTTGTCATCTCAAGAATCTTCACAGGATCCTATGTATTATGTTCTGTTGCGGCATCCAAACAAGAATGGCACAGCACCACAAAGACAGCGTTCATCTGTTGTGACTCTAAGAATAATTTTCAGCATTTTGGGTGTTGTCATGCTTGGAACTTTGGTGTACACTCTTGTCACCAATGGTTCTCCTTTCCGTAAAGGGGTTCTAACTCCGTGGTTGGCAACAACACTAGTTGACATCTATTTCCACATTGTGATTTATGCAGTCTGGGTTGCCTACAAAGAATCTAGTTGGATTTCTGCAGTCTTTTGGATAATTCTATTGATATGTTTTAGCAGCATGGCTACTTGCCTCTACATTACATGGCAGCTGTTCCAGATATCTTGTCAAGATCCTGCTTACCTTGTTTTAGTGCATCATGGAGACAGGGCGGAAAACGAATATACGGGGATTTCTGGTGAGGCAACATAACAATGGTGTTCATGAACCAAAGGAAATAAAAAGAAAGGGGATCAGATCATCCCTGAGCAGATATTGTAACACCAGAAGACAAAATTAACATACTGGTGTAATAGATGTAGTTTGGAGATCATTATCTCTGCAAATACTACTGCAGAAGAATGATGTCATTCCCCAAGCAGTCCTCTATACATGTTACAGAATTCGTGGGACTTTATCCCTAATATGGGATGAGCACCTCCTTCACCTGAATAGACTAAGCAATGTGGGACATACACTAAGGCAAGGCACGTTAAGGATATTCCTTCTTCATCTGTGGAGCTTTTACCATTTGGAACTTTCGATGAGAAACCTGTATTTGTATTTTGATTTCTTTGACTTTCTGAGGTGATTTGAAGTTCCATTGAGACTGCAACTACAACTTCAACTGTTGTTTCTGTTACCACAAACAGAATGTACAATTGAAGGTAGAACTTCGACAATTGAATGAGTAAGACTGTAACCTCAACTTTCGTTGTTTCTGTGACCATAAACAGAATGTACAATTGAAGGTAGAACTTTGACAATTGGATGAGTAAGACTGTAACTGCAATAGATTTTTATTATTTGATAGTTGGTTGTGACTTGTGTTGGTCCATTTTTAAGAATATGTCGCTCACAGAATCGTTTTAGGGTGTTTTATTGGCTCTAGTTCATGACTTATTTGTGATGACTTACTACTATGGTTCTTTTTCA >Glyma20g31141.3 sequence type=transcript gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGGGTACCTTATCCACAGCCAAGTTCAACTTATCCACAAAGAAACATCGTGGTTCCCTCGCATCAGCATCTTTCGTAATTTTCTTCACTGCTATTTACCATTGCCACACTCTCATTCTCGATGGCGGCGAAGATTTCATTGGCAATTGGTTTGAGAACTCTCTTCACTGTTTTGGGACTTCTCATGCTTGCTGTCTTTCTTTACACTGCCTTCACCGATGGTCTAGGTGTTCGCTTTCTCAAAGAACTTGTCAGACCGTGGATGGTAGCAACTTTGGTTTGTTTCTATATCAACATTGTAGCTTTTGCTGTCTGGATTGCTTACAAGGAATCAAACTTGATCAGCTCAATTCTGTGGATTGTTTTGATTGCCTTGTTAGGGAGTATCTTTACATCTGCCTATATTGTTGTGCAATTTCTGAAGTTGTCATCTCAAGAATCTTCACAGGATCCTATGTATTATGTTCTGTTGCGGCATCCAAACAAGAATGGCACAGCACCACAAAGACAGCGTTCATCTGTTGTGACTCTAAGAATAATTTTCAGCATTTTGGGTGTTGTCATGCTTGGAACTTTGGTGTACACTCTTGTCACCAATGGTTCTCCTTTCCGTAAAGGGGTTCTAACTCCGTGGTTGGCAACAACACTAGTTGACATCTATTTCCACATTGTGATTTATGCAGTCTGGGTTGCCTACAAAGAATCTAGTTGGATTTCTGCAGTCTTTTGGATAATTCTATTGATATGTTTTAGCAGCATGGCTACTTGCCTCTACATTACATGGCAGCTGTTCCAGATATCTTGTCAAGATCCTGCTTACCTTGTTTTAGTGCATCATGGAGACAGGGCGGAAAACGAATATACGGGGATTTCTGGTGAGGCAACATAACAATGGTGTTCATGAACCAAAGGAAATAAAAAGAAAGGGGATCAGATCATCCCTGAGCAGATATTGTAACACCAGAAGACAAAATTAACATACTGGTGTAATAGATGTAGTTTGGAGATCATTATCTCTGCAAATACTACTGCAGAAGAATGATGTCATTCCCCAAGCAGTAATTGTTCTACTTTCTTGTGTTATGAATGCTCAATTTTTTCCTCTGTATAACACCACTGTAATTGATTATAAAGTTCAAACGTTAGAATCAGAGAAAATGTTCAGATCATAAGTATCTATTCATTTGTTACTTGCATGAATAACCGTATCTTTAACTTT
>Glyma20g31141.1 sequence type=CDS gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGAAGATTTCATTGGCAATTGGTTTGAGAACTCTCTTCACTGTTTTGGGACTTCTCATGCTTGCTGTCTTTCTTTACACTGCCTTCACCGATGGTCTAGGTGTTCGCTTTCTCAAAGAACTTGTCAGACCGTGGATGGTAGCAACTTTGGTTTGTTTCTATATCAACATTGTAGCTTTTGCTGTCTGGATTGCTTACAAGGAATCAAACTTGATCAGCTCAATTCTGTGGATTGTTTTGATTGCCTTGTTAGGGAGTATCTTTACATCTGCCTATATTGTTGTGCAATTTCTGAAGTTGTCATCTCAAGAATCTTCACAGGATCCTATGTATTATGTTCTGTTGCGGCATCCAAACAAGAATGGCACAGCACCACAAAGACAGCGTTCATCTGTTGTGACTCTAAGAATAATTTTCAGCATTTTGGGTGTTGTCATGCTTGGAACTTTGGTGTACACTCTTGTCACCAATGGTTCTCCTTTCCGTAAAGGGGTTCTAACTCCGTGGTTGGCAACAACACTAGTTGACATCTATTTCCACATTGTGATTTATGCAGTCTGGGTTGCCTACAAAGAATCTAGTTGGATTTCTGCAGTCTTTTGGATAATTCTATTGATATGTTTTAGCAGCATGGCTACTTGCCTCTACATTACATGGCAGCTGTTCCAGATATCTTGTCAAGATCCTGCTTACCTTGTTTTAGTGCATCATGGAGACAGGGCGGAAAACGAATATACGGGGATTTCTGGTGAGGCAACATAA >Glyma20g31141.2 sequence type=CDS gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGAAGATTTCATTGGCAATTGGTTTGAGAACTCTCTTCACTGTTTTGGGACTTCTCATGCTTGCTGTCTTTCTTTACACTGCCTTCACCGATGGTCTAGGTGTTCGCTTTCTCAAAGAACTTGTCAGACCGTGGATGGTAGCAACTTTGGTTTGTTTCTATATCAACATTGTAGCTTTTGCTGTCTGGATTGCTTACAAGGAATCAAACTTGATCAGCTCAATTCTGTGGATTGTTTTGATTGCCTTGTTAGGGAGTATCTTTACATCTGCCTATATTGTTGTGCAATTTCTGAAGTTGTCATCTCAAGAATCTTCACAGGATCCTATGTATTATGTTCTGTTGCGGCATCCAAACAAGAATGGCACAGCACCACAAAGACAGCGTTCATCTGTTGTGACTCTAAGAATAATTTTCAGCATTTTGGGTGTTGTCATGCTTGGAACTTTGGTGTACACTCTTGTCACCAATGGTTCTCCTTTCCGTAAAGGGGTTCTAACTCCGTGGTTGGCAACAACACTAGTTGACATCTATTTCCACATTGTGATTTATGCAGTCTGGGTTGCCTACAAAGAATCTAGTTGGATTTCTGCAGTCTTTTGGATAATTCTATTGATATGTTTTAGCAGCATGGCTACTTGCCTCTACATTACATGGCAGCTGTTCCAGATATCTTGTCAAGATCCTGCTTACCTTGTTTTAGTGCATCATGGAGACAGGGCGGAAAACGAATATACGGGGATTTCTGGTGAGGCAACATAA >Glyma20g31141.3 sequence type=CDS gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGAAGATTTCATTGGCAATTGGTTTGAGAACTCTCTTCACTGTTTTGGGACTTCTCATGCTTGCTGTCTTTCTTTACACTGCCTTCACCGATGGTCTAGGTGTTCGCTTTCTCAAAGAACTTGTCAGACCGTGGATGGTAGCAACTTTGGTTTGTTTCTATATCAACATTGTAGCTTTTGCTGTCTGGATTGCTTACAAGGAATCAAACTTGATCAGCTCAATTCTGTGGATTGTTTTGATTGCCTTGTTAGGGAGTATCTTTACATCTGCCTATATTGTTGTGCAATTTCTGAAGTTGTCATCTCAAGAATCTTCACAGGATCCTATGTATTATGTTCTGTTGCGGCATCCAAACAAGAATGGCACAGCACCACAAAGACAGCGTTCATCTGTTGTGACTCTAAGAATAATTTTCAGCATTTTGGGTGTTGTCATGCTTGGAACTTTGGTGTACACTCTTGTCACCAATGGTTCTCCTTTCCGTAAAGGGGTTCTAACTCCGTGGTTGGCAACAACACTAGTTGACATCTATTTCCACATTGTGATTTATGCAGTCTGGGTTGCCTACAAAGAATCTAGTTGGATTTCTGCAGTCTTTTGGATAATTCTATTGATATGTTTTAGCAGCATGGCTACTTGCCTCTACATTACATGGCAGCTGTTCCAGATATCTTGTCAAGATCCTGCTTACCTTGTTTTAGTGCATCATGGAGACAGGGCGGAAAACGAATATACGGGGATTTCTGGTGAGGCAACATAA
>Glyma20g31141.1 sequence type=predicted peptide gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAKISLAIGLRTLFTVLGLLMLAVFLYTAFTDGLGVRFLKELVRPWMVATLVCFYINIVAFAVWIAYKESNLISSILWIVLIALLGSIFTSAYIVVQFLKLSSQESSQDPMYYVLLRHPNKNGTAPQRQRSSVVTLRIIFSILGVVMLGTLVYTLVTNGSPFRKGVLTPWLATTLVDIYFHIVIYAVWVAYKESSWISAVFWIILLICFSSMATCLYITWQLFQISCQDPAYLVLVHHGDRAENEYTGISGEAT* >Glyma20g31141.2 sequence type=predicted peptide gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAKISLAIGLRTLFTVLGLLMLAVFLYTAFTDGLGVRFLKELVRPWMVATLVCFYINIVAFAVWIAYKESNLISSILWIVLIALLGSIFTSAYIVVQFLKLSSQESSQDPMYYVLLRHPNKNGTAPQRQRSSVVTLRIIFSILGVVMLGTLVYTLVTNGSPFRKGVLTPWLATTLVDIYFHIVIYAVWVAYKESSWISAVFWIILLICFSSMATCLYITWQLFQISCQDPAYLVLVHHGDRAENEYTGISGEAT* >Glyma20g31141.3 sequence type=predicted peptide gene model=Glyma20g31141 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAKISLAIGLRTLFTVLGLLMLAVFLYTAFTDGLGVRFLKELVRPWMVATLVCFYINIVAFAVWIAYKESNLISSILWIVLIALLGSIFTSAYIVVQFLKLSSQESSQDPMYYVLLRHPNKNGTAPQRQRSSVVTLRIIFSILGVVMLGTLVYTLVTNGSPFRKGVLTPWLATTLVDIYFHIVIYAVWVAYKESSWISAVFWIILLICFSSMATCLYITWQLFQISCQDPAYLVLVHHGDRAENEYTGISGEAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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