SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G30060 | AT | Annotation by Michelle Graham. TAIR10: Pleckstrin homology (PH) domain superfamily protein | chr2:12827035-12828551 FORWARD LENGTH=217 | SoyBase | E_val: 9.00E-100 | ISS |
| GO:0000060 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus, translocation | SoyBase | N/A | ISS |
| GO:0046907 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding | SoyBase | N/A | ISS |
| KOG0864 | KOG | Ran-binding protein RANBP1 and related RanBD domain proteins | JGI | ISS | |
| PTHR23138 | Panther | RAN BINDING PROTEIN | JGI | ISS | |
| PTHR23138:SF10 | Panther | RAN BINDING PROTEIN | JGI | ISS | |
| PF00638 | PFAM | RanBP1 domain | JGI | ISS | |
| UniRef100_G7KIE5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ran-binding protein-like protein n=1 Tax=Medicago truncatula RepID=G7KIE5_MEDTR | SoyBase | E_val: 4.00E-101 | ISS |
| UniRef100_I1NH59 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NH59_SOYBN | SoyBase | E_val: 1.00E-157 | ISS |
|
Glyma20g31070 not represented in the dataset |
Glyma20g31070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g36500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g170700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g31070.1 sequence type=CDS gene model=Glyma20g31070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGAGCGCCGATCCCGAGCACCGAGAAGAGGAGGAGGCACCCGCCGTCGGCGACGACGAGGACACCGGAGCACACGTCGCTCCCATCGTCAAGCTCGAGGAGGTTGCTGTCACCACCGGCGAGGAGGACGAAGATGCAATCCTAGATCTCAAATCGAAGCTTTACCGGTTCGACAAGGATGGGAACCAGTGGAAGGAGCGAGGCGCGGGCACCGTGAAGTTCCTGAAGCATAAGGCTACGGGCAAGGTTAGGCTTCTCATGAGGCAATCCAAGACGCTCAAGATCTGCGCCAATCATCTCATTTTGCCTACTATGAGTGTGCAAGAGCACGCTGGGAACGAGAAATCTTGCGTTTGGCACGCTAGGGATTTTGCTGATGGTGAACTCAAGGACGAGCTTTTCTGCATCCGTTTTCCTTCTATTGAAAATTGCAAAAGCTTCATGGAAACATTCCAAGAAGTTGCTGAATCCCAGAAGGCAGAGGATGAGAAGGAATCAGCTGATGCAGCTGGTCTTATTGAGAAATTAAGTGTTGAAGAAAAGGCTGATGCAGAGAAGAAGGATGAAGAGAAGTCTGAGGACAAAACTGTGGAGAAAGAATCTGCATCAGGGAAGGAAAGCAAGGCGGTTGAAGATAAGAAAGCCGAAGAGCCTGCATCCTCAGCTTGA
>Glyma20g31070.1 sequence type=predicted peptide gene model=Glyma20g31070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSADPEHREEEEAPAVGDDEDTGAHVAPIVKLEEVAVTTGEEDEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKATGKVRLLMRQSKTLKICANHLILPTMSVQEHAGNEKSCVWHARDFADGELKDELFCIRFPSIENCKSFMETFQEVAESQKAEDEKESADAAGLIEKLSVEEKADAEKKDEEKSEDKTVEKESASGKESKAVEDKKAEEPASSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
