SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74320 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr1:27941192-27942903 FORWARD LENGTH=350 | SoyBase | E_val: 8.00E-168 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004103 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: choline kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG2686 | KOG | Choline kinase | JGI | ISS | |
| PTHR22603 | Panther | CHOLINE/ETHANOALAMINE KINASE RELATED | JGI | ISS | |
| PTHR22603:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01633 | PFAM | Choline/ethanolamine kinase | JGI | ISS | |
| UniRef100_Q42810 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GmCK2p n=1 Tax=Glycine max RepID=Q42810_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q42810 | UniRef | Annotation by Michelle Graham. Best UniRef hit: GmCK2p n=1 Tax=Glycine max RepID=Q42810_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g31030 not represented in the dataset |
Glyma20g31030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g36570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g170300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g31030.2 sequence type=transcript gene model=Glyma20g31030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTTCTCGTTTCTCTTCTTACCCTTTAATCATTCTTCACGGATTTTTGATCCCGGACACTTTTCCTCAACTGGGTTCCGAAAAAGTTTCTGTCTTTTTCACGCAATATTCTATTTTCAAACTCTTTTAGCGGCAGCATTTCCCCTGTTTTCTAACTCTGTACTTCTCTGTCACGGGGAAAGCACTTAACCAAACTCTCTGTTTCAGCTTCCTCTGTTTTTTGGGTACGAACAGAGTTTCTCTGTTTTTGACGATGGCCATAAAGGCGATTGAACTGTTGAAAGGGTGCGGATCACAAGAAGAAATAATGGAAGTGCTTGCTGCGGTGGCTTCGGATTTGGGGGATGTGATCGATGATGTGAACACCTTGCAGGTGATTCCACTGAATGGTGCAATGACCAATGAGGTTTTTCAGATAAACTGGCCAACCAAAAATGGTGGTGAGATCAGAAAGGTTCTGGTTCGTTTATATGGGGAAGGTGTTGAAGTTTTCTTTGACAGGGAAGAAGAAATTCGAAACTTTGACTGTATTTCAAAGCATGGTCAGGGTCCACGCCTTCTTGGCCGATTCACCTCTGGCAGAGTTGAGGAGTTTATTCATGCCCGAACTCTCTCAGCTGCTGACCTCCGTGACCCTGAAGTATCTGCTTTGATAGCATCTAAGATGAGAGAGTTCCATAATCTTCATATGCCTGGTGCAAAGAAGGTTCAGATTTGGCACAGAATGAGGAAGTGGCTCGGTCAAGCCAAAAGTCTGTGCTCCCCAAAGGATGAAAAAAATTTTGGCTTGGACAATCTGGATGAGGAAATAAATATCCTGGAGAAGAAGTTATCTGAAGGATATCAAGAGATTGGTTTTTGTCACAATGACTTACAATATGGTAACATAATGATGGATGAAGAGACAAGATTAATCACTATAATTGACTATGAATATGCCAGTTATAATCCCATTGCATATGACCTCGCAAATCATTTTTGTGAAATGGTGGCAGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAGGACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAGGCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCGAGTTATGTGAACAAAATTGATTTTGACTATAAGGAGTATGCAAGGCAGAGGTTTCAGCAATACTGGATAAGGAAGCCTACTTTATTGGACTCACCAAGCATCGTTTCCCTAGATGAAACTGTGAATGGATTGATGCCATCCTTCACGTGATTTTGCTTCAGATTTCTTATAGCCTTTTTGGAGATGTAGGGTGCGATACCAAACATGCATTTACTGAAGTTTAGTCTTAGTATATATATTAATATATTAATAACACCTGAAGGTATGATATGCAGCATCATATATGTAAACAATATGTAATCACTAACAATGTGTGATGAGTTTTGGAAATTTAAGGATTGTTTACCAGTCCCTCTCTTTTGGGATTGAGTTGGGGGATAAGAGTGAGAATAAGTAGTTTATATTGTTTGCAATATTGATGGGATATGCATATAGCAAATAGATAGATTTGTTCTCGCATTTTACTTACACATTAAATAATGATTGAGGTTGAGATTTGATATTAATCACTCAGAAGTTTTTGTTTTTAACTATTGTAATTAGAGTATTTGACTTTAGAATAAAACT
>Glyma20g31030.1 sequence type=CDS gene model=Glyma20g31030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATAAAGGCGATTGAACTGTTGAAAGGGTGCGGATCACAAGAAGAAATAATGGAAGTGCTTGCTGCGGTGGCTTCGGATTTGGGGGATGTGATCGATGATGTGAACACCTTGCAGGTGATTCCACTGAATGGTGCAATGACCAATGAGGTTTTTCAGATAAACTGGCCAACCAAAAATGGTGGTGAGATCAGAAAGGTTCTGGTTCGTTTATATGGGGAAGGTGTTGAAGTTTTCTTTGACAGGGAAGAAGAAATTCGAAACTTTGACTGTATTTCAAAGCATGGTCAGGGTCCACGCCTTCTTGGCCGATTCACCTCTGGCAGAGTTGAGGAGTTTATTCATGCCCGAACTCTCTCAGCTGCTGACCTCCGTGACCCTGAAGTATCTGCTTTGATAGCATCTAAGATGAGAGAGTTCCATAATCTTCATATGCCTGGTGCAAAGAAGGTTCAGATTTGGCACAGAATGAGGAAGTGGCTCGGTCAAGCCAAAAGTCTGTGCTCCCCAAAGGATGAAAAAAATTTTGGCTTGGACAATCTGGATGAGGAAATAAATATCCTGGAGAAGAAGTTATCTGAAGGATATCAAGAGATTGGTTTTTGTCACAATGACTTACAATATGGTAACATAATGATGGATGAAGAGACAAGATTAATCACTATAATTGACTATGAATATGCCAGTTATAATCCCATTGCATATGACCTCGCAAATCATTTTTGTGAAATGGTGGCAGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAGGACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAGGCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCGAGTTATGTGAACAAAATTGATTTTGACTATAAGGAGTATGCAAGGCAGAGGTTTCAGCAATACTGGATAAGGAAGCCTACTTTATTGGACTCACCAAGCATCGTTTCCCTAGATGAAACTGTGAATGGATTGATGCCATCCTTCACGTGA >Glyma20g31030.2 sequence type=CDS gene model=Glyma20g31030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATAAAGGCGATTGAACTGTTGAAAGGGTGCGGATCACAAGAAGAAATAATGGAAGTGCTTGCTGCGGTGGCTTCGGATTTGGGGGATGTGATCGATGATGTGAACACCTTGCAGGTGATTCCACTGAATGGTGCAATGACCAATGAGGTTTTTCAGATAAACTGGCCAACCAAAAATGGTGGTGAGATCAGAAAGGTTCTGGTTCGTTTATATGGGGAAGGTGTTGAAGTTTTCTTTGACAGGGAAGAAGAAATTCGAAACTTTGACTGTATTTCAAAGCATGGTCAGGGTCCACGCCTTCTTGGCCGATTCACCTCTGGCAGAGTTGAGGAGTTTATTCATGCCCGAACTCTCTCAGCTGCTGACCTCCGTGACCCTGAAGTATCTGCTTTGATAGCATCTAAGATGAGAGAGTTCCATAATCTTCATATGCCTGGTGCAAAGAAGGTTCAGATTTGGCACAGAATGAGGAAGTGGCTCGGTCAAGCCAAAAGTCTGTGCTCCCCAAAGGATGAAAAAAATTTTGGCTTGGACAATCTGGATGAGGAAATAAATATCCTGGAGAAGAAGTTATCTGAAGGATATCAAGAGATTGGTTTTTGTCACAATGACTTACAATATGGTAACATAATGATGGATGAAGAGACAAGATTAATCACTATAATTGACTATGAATATGCCAGTTATAATCCCATTGCATATGACCTCGCAAATCATTTTTGTGAAATGGTGGCAGATTACCACAGTGACACACCTCATGTTCTTGACTACACGAAGTATCCAGGACTAGAGGAACGTCAAAGATTTATCCGCAACTATCTGAGTTCTGAAGGCAATAAACCAAGCAATGCTAAAGTGAACCAGTTAGCGAAAGCTGCAGAAAAATACACTCTTGCAAACCATCTATTTTGGGGGTTGTGGGGACTTATTTCGAGTTATGTGAACAAAATTGATTTTGACTATAAGGAGTATGCAAGGCAGAGGTTTCAGCAATACTGGATAAGGAAGCCTACTTTATTGGACTCACCAAGCATCGTTTCCCTAGATGAAACTGTGAATGGATTGATGCCATCCTTCACGTGA
>Glyma20g31030.1 sequence type=predicted peptide gene model=Glyma20g31030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIKAIELLKGCGSQEEIMEVLAAVASDLGDVIDDVNTLQVIPLNGAMTNEVFQINWPTKNGGEIRKVLVRLYGEGVEVFFDREEEIRNFDCISKHGQGPRLLGRFTSGRVEEFIHARTLSAADLRDPEVSALIASKMREFHNLHMPGAKKVQIWHRMRKWLGQAKSLCSPKDEKNFGLDNLDEEINILEKKLSEGYQEIGFCHNDLQYGNIMMDEETRLITIIDYEYASYNPIAYDLANHFCEMVADYHSDTPHVLDYTKYPGLEERQRFIRNYLSSEGNKPSNAKVNQLAKAAEKYTLANHLFWGLWGLISSYVNKIDFDYKEYARQRFQQYWIRKPTLLDSPSIVSLDETVNGLMPSFT* >Glyma20g31030.2 sequence type=predicted peptide gene model=Glyma20g31030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIKAIELLKGCGSQEEIMEVLAAVASDLGDVIDDVNTLQVIPLNGAMTNEVFQINWPTKNGGEIRKVLVRLYGEGVEVFFDREEEIRNFDCISKHGQGPRLLGRFTSGRVEEFIHARTLSAADLRDPEVSALIASKMREFHNLHMPGAKKVQIWHRMRKWLGQAKSLCSPKDEKNFGLDNLDEEINILEKKLSEGYQEIGFCHNDLQYGNIMMDEETRLITIIDYEYASYNPIAYDLANHFCEMVADYHSDTPHVLDYTKYPGLEERQRFIRNYLSSEGNKPSNAKVNQLAKAAEKYTLANHLFWGLWGLISSYVNKIDFDYKEYARQRFQQYWIRKPTLLDSPSIVSLDETVNGLMPSFT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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