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Report for Sequence Feature Glyma20g30835

Feature Type:gene_model
Chromosome:Gm20
Start:39519842
stop:39522155
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g30835
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61890AT Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr5:24852639-24853744 REVERSE LENGTH=248 SoyBaseE_val: 4.00E-32ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF00847PFAM AP2 domain JGI ISS
UniRef100_B9H7U8UniRef Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9H7U8_POPTR SoyBaseE_val: 4.00E-39ISS
UniRef100_I1NH39UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NH39_SOYBN SoyBaseE_val: 3.00E-136ISS

Expression Patterns of Glyma20g30835
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g30835 not represented in the dataset
Glyma20g30835 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g30835
ParalogEvidenceComments
Glyma10g36760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g30835 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g168500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g30835
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g30835
>Glyma20g30835.2   sequence type=transcript   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGAGCTTAAGCCTTGTCTGATATTTAAGCAAATCATTAGTGAGTTGTGACTTAATCCTGAATTTAGTTTTCAACCAGACCGTCCTTCGTCAGTTAACTATGGGCTAATCACAATTCAGGAAGCCCAAAACTATTAAAGAAACCGACAACACAAAGGATTTGCAGAAAGTGCAGCTACTTAGTTCCATTTTCATCCTCTCTCCATTAACTTTCAGTCAAAACAAAACAAAACCTCTTTAGGTGTGAAATTCCACGTGCCAAAATCATCTCCGAGGCACCAACATCGGCAGCCACATATTTCTTTATTTATTGAAGGAATCAGTATATAAAACACCTGCTTTCTAACGGTGGCGCACCAGAGGGGTTTAGGTTCAGGTTCGGGGAAGTTCTTCGCGGCGGAGCAAGGCGGCGATGAGGAAGCGGAAGAGAGTACTGAGGTAGGTTCTGTTCCGAGCCATGTGGTGTCAGCCTCTGCAGCTTCGGCCCAAACCAATCAGTGGGTGCCGCGGGGAAGTGGTTTTCCCATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGACATGGAATACACATTTTTTTCTTTATTCTATTTTTTCTCTTTCTTTGGTTAAAGAAAGAACAAGGCTTTCTTCTGTTTATTTATTTTAATTTATCTGTTTTTGCTTTTTTAGATTATTTGGAGTCCAGTTCACTGAATTTTTATGTGGTTTTGGGTTAAACTGTTACTATTTGCTGCTGTTATTTGAATAAATACTATTTGAAGAGTAGGGAGTAGGGAATGGGAGGTTGGAGGATGCATGATAAAGGCTTTAAGCCTTTGAGGTAGATACGAATGGAGTTTAAGTGGTACGACAAAGCAGTACTTAGGTTGGAAGCTGAGTTTATTCCAGATTATCAACTCAATGGATTTGATGTTAACATTTTGTCAACAATCCACGCAAAGGTGAAGAAACCAATATCTTTTATAAAACCTGTTCCCAATAAACCAACTTTTTTATTATGGAATGAGGATTGAGGGATGTATTTAGAAGATATAATACTAATTTAGTGTGATATGCATAATTTTGGTTTTTAAGCTGGTGTTAATTGTTTGGTAAGTGTA

>Glyma20g30835.3   sequence type=transcript   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCAACTCAAAGATGATCACTGTTTCTTTCTTTCTCTATATCTCAAAAAGGAAACCGACAACACAAAGGATTTGCAGAAAGTGCAGCTACTTAGTTCCATTTTCATCCTCTCTCCATTAACTTTCAGTCAAAACAAAACAAAACCTCTTTAGGTGTGAAATTCCACGTGCCAAAATCATCTCCGAGGCACCAACATCGGCAGCCACATATTTCTTTATTTATTGAAGGAATCAGTATATAAAACACCTGCTTTCTAACGGTGGCGCACCAGAGGGGTTTAGGTTCAGGTTCGGGGAAGTTCTTCGCGGCGGAGCAAGGCGGCGATGAGGAAGCGGAAGAGAGTACTGAGGTAGGTTCTGTTCCGAGCCATGTGGTGTCAGCCTCTGCAGCTTCGGCCCAAACCAATCAGTGGGTGCCGCGGGGAAGTGGTTTTCCCATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGACATGGAATACACATTTTTTTCTTTATTCTATTTTTTCTCTTTCTTTGGTTAAAGAAAGAACAAGGCTTTCTTCTGTTTATTTATTTTAATTTATCTGTTTTTGCTTTTTTAGATTATTTGGAGTCCAGTTCACTGAATTTTTATGTGGTTTTGGGTTAAACTGTTACTATTTGCTGCTGTTATTTGAATAAATACTATTTGAAGAGTAGGGAGTAGGGAATGGGAGGTTGGAGGATGCATGATAAAGGCTTTAAGCCTTTGAGGTAGATACGAATGGAGTTTAAGTGGTACGACAAAGCAGTACTTAGGTTGGAAGCTGAGTTTATTCCAGATTATCAACTCAATGGATTTGATGTTAACATTTTGTCAACAATCCACGCAAAGGTGAAGAAACCAATATCTTTTATAAAACCTGTTCCCAATAAACCAACTTTTTTATTATGGAATGAGGATTGAGGGATGTATTTAGAAGATATAATACTAATTTAGTGTGATATGCATAATTTTGGTTTTTAAGCTGGTGTTAATTGTTTGGTAAGTGTA
Coding sequences of Glyma20g30835
>Glyma20g30835.1   sequence type=CDS   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA

>Glyma20g30835.2   sequence type=CDS   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA

>Glyma20g30835.3   sequence type=CDS   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA
Predicted protein sequences of Glyma20g30835
>Glyma20g30835.1   sequence type=predicted peptide   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG*

>Glyma20g30835.2   sequence type=predicted peptide   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG*

>Glyma20g30835.3   sequence type=predicted peptide   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG*






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