Glyma20g30835 - SoyBase

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Report for Sequence Feature Glyma20g30835

Feature Type:	gene_model
Chromosome:	Gm20
Start:	39519842
stop:	39522155
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g30835

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61890	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:24852639-24853744 REVERSE LENGTH=248	SoyBase	E_val: 4.00E-32	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B9H7U8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9H7U8_POPTR	SoyBase	E_val: 4.00E-39	ISS
UniRef100_I1NH39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NH39_SOYBN	SoyBase	E_val: 3.00E-136	ISS

Expression Patterns of Glyma20g30835

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g30835 not represented in the dataset	Glyma20g30835 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g30835

Paralog	Evidence	Comments
Glyma10g36760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g30835 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g168500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g30835

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g30835

Limit To All Plant Sequences

>Glyma20g30835.2   sequence type=transcript   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGAGCTTAAGCCTTGTCTGATATTTAAGCAAATCATTAGTGAGTTGTGACTTAATCCTGAATTTAGTTTTCAACCAGACCGTCCTTCGTCAGTTAACTATGGGCTAATCACAATTCAGGAAGCCCAAAACTATTAAAGAAACCGACAACACAAAGGATTTGCAGAAAGTGCAGCTACTTAGTTCCATTTTCATCCTCTCTCCATTAACTTTCAGTCAAAACAAAACAAAACCTCTTTAGGTGTGAAATTCCACGTGCCAAAATCATCTCCGAGGCACCAACATCGGCAGCCACATATTTCTTTATTTATTGAAGGAATCAGTATATAAAACACCTGCTTTCTAACGGTGGCGCACCAGAGGGGTTTAGGTTCAGGTTCGGGGAAGTTCTTCGCGGCGGAGCAAGGCGGCGATGAGGAAGCGGAAGAGAGTACTGAGGTAGGTTCTGTTCCGAGCCATGTGGTGTCAGCCTCTGCAGCTTCGGCCCAAACCAATCAGTGGGTGCCGCGGGGAAGTGGTTTTCCCATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGACATGGAATACACATTTTTTTCTTTATTCTATTTTTTCTCTTTCTTTGGTTAAAGAAAGAACAAGGCTTTCTTCTGTTTATTTATTTTAATTTATCTGTTTTTGCTTTTTTAGATTATTTGGAGTCCAGTTCACTGAATTTTTATGTGGTTTTGGGTTAAACTGTTACTATTTGCTGCTGTTATTTGAATAAATACTATTTGAAGAGTAGGGAGTAGGGAATGGGAGGTTGGAGGATGCATGATAAAGGCTTTAAGCCTTTGAGGTAGATACGAATGGAGTTTAAGTGGTACGACAAAGCAGTACTTAGGTTGGAAGCTGAGTTTATTCCAGATTATCAACTCAATGGATTTGATGTTAACATTTTGTCAACAATCCACGCAAAGGTGAAGAAACCAATATCTTTTATAAAACCTGTTCCCAATAAACCAACTTTTTTATTATGGAATGAGGATTGAGGGATGTATTTAGAAGATATAATACTAATTTAGTGTGATATGCATAATTTTGGTTTTTAAGCTGGTGTTAATTGTTTGGTAAGTGTA

>Glyma20g30835.3   sequence type=transcript   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCAACTCAAAGATGATCACTGTTTCTTTCTTTCTCTATATCTCAAAAAGGAAACCGACAACACAAAGGATTTGCAGAAAGTGCAGCTACTTAGTTCCATTTTCATCCTCTCTCCATTAACTTTCAGTCAAAACAAAACAAAACCTCTTTAGGTGTGAAATTCCACGTGCCAAAATCATCTCCGAGGCACCAACATCGGCAGCCACATATTTCTTTATTTATTGAAGGAATCAGTATATAAAACACCTGCTTTCTAACGGTGGCGCACCAGAGGGGTTTAGGTTCAGGTTCGGGGAAGTTCTTCGCGGCGGAGCAAGGCGGCGATGAGGAAGCGGAAGAGAGTACTGAGGTAGGTTCTGTTCCGAGCCATGTGGTGTCAGCCTCTGCAGCTTCGGCCCAAACCAATCAGTGGGTGCCGCGGGGAAGTGGTTTTCCCATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGACATGGAATACACATTTTTTTCTTTATTCTATTTTTTCTCTTTCTTTGGTTAAAGAAAGAACAAGGCTTTCTTCTGTTTATTTATTTTAATTTATCTGTTTTTGCTTTTTTAGATTATTTGGAGTCCAGTTCACTGAATTTTTATGTGGTTTTGGGTTAAACTGTTACTATTTGCTGCTGTTATTTGAATAAATACTATTTGAAGAGTAGGGAGTAGGGAATGGGAGGTTGGAGGATGCATGATAAAGGCTTTAAGCCTTTGAGGTAGATACGAATGGAGTTTAAGTGGTACGACAAAGCAGTACTTAGGTTGGAAGCTGAGTTTATTCCAGATTATCAACTCAATGGATTTGATGTTAACATTTTGTCAACAATCCACGCAAAGGTGAAGAAACCAATATCTTTTATAAAACCTGTTCCCAATAAACCAACTTTTTTATTATGGAATGAGGATTGAGGGATGTATTTAGAAGATATAATACTAATTTAGTGTGATATGCATAATTTTGGTTTTTAAGCTGGTGTTAATTGTTTGGTAAGTGTA

Coding sequences of Glyma20g30835

Limit To All Plant Sequences

>Glyma20g30835.1   sequence type=CDS   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA

>Glyma20g30835.2   sequence type=CDS   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA

>Glyma20g30835.3   sequence type=CDS   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCACGTTTTATGCATGCGCCTTCTCCCGTTCTGTCTTCTTCGCATCCTCATTTGGGAGTTGGCCACAAGAGAGAGCGTGAAGATGACACTGGCGCTGGTGCGAGTGGAGGTGTTGCTATTGCAGCAGCTTCTTCACAAACGCAAACACAAGAGATTGAAAGTGCTGGCGGCGACAGGAGGAGGAGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCAGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCCGAGGCTGCGGCCAGAGCCTACGATGAAGCCGCATTGAGGTTCAGAGGTAACAGAGCAAAACTTAATTTCCCCGAAAACGTTGTACCGGTTCCACCTCCTCCTCCGGTTCCCGATTTACCGGCAAGTGCGGTAGCCGGTTCCGATTCCATTTCCGGTTCCGGTTCAGTGGTGGCAGGTTTTTCGCCGACGCTGATGCAGGGAGCGCCGTTTCAGGGCTCCTCTGCTTTTCTGAGAGATTATTGGGGGTATTCTCAGCTGCTGAGGAGTACAGGGGACTTCCATGGACTCGACCAGTGGTTCTTTGATTCTCAAATGGCAGCGTTTCAATCTTCTTCATCGTCGTTGTTGCCATCGCCGCCGCCGCCGTCGTTTTCGCCTTCCTCTGCTTCGTATCCTCTGTTTTCTTCCAGCCAGCAAATGGGGATTTTCCGGCCGCCGGGAGAGCAGGGTCATGGCGGAGAAGACGGTGGTAGTGGGTCAGAGTTTTCGGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCACCTGGTTGA

Predicted protein sequences of Glyma20g30835

Limit To All Plant Sequences

>Glyma20g30835.1   sequence type=predicted peptide   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG*

>Glyma20g30835.2   sequence type=predicted peptide   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG*

>Glyma20g30835.3   sequence type=predicted peptide   gene model=Glyma20g30835   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSRFMHAPSPVLSSSHPHLGVGHKREREDDTGAGASGGVAIAAASSQTQTQEIESAGGDRRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVVPVPPPPPVPDLPASAVAGSDSISGSGSVVAGFSPTLMQGAPFQGSSAFLRDYWGYSQLLRSTGDFHGLDQWFFDSQMAAFQSSSSSLLPSPPPPSFSPSSASYPLFSSSQQMGIFRPPGEQGHGGEDGGSGSEFSELPPSTWSDTSGYPPPPPG*

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