SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G42140 | AT | Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:16837547-16841640 REVERSE LENGTH=1073 | SoyBase | E_val: 0 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chromatin binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0008536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding | SoyBase | N/A | ISS |
| GO:0035091 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG1427 | KOG | Uncharacterized conserved protein, contains RCC1 domain | JGI | ISS | |
| PTHR22870 | Panther | REGULATOR OF CHROMOSOME CONDENSATION | JGI | ISS | |
| PTHR22870:SF25 | Panther | REGULATOR OF CHROMOSOME CONDENSATION-RELATED | JGI | ISS | |
| PF00415 | PFAM | Regulator of chromosome condensation (RCC1) repeat | JGI | ISS | |
| PF01363 | PFAM | FYVE zinc finger | JGI | ISS | |
| PF08381 | PFAM | Disease resistance/zinc finger/chromosome condensation-like region | JGI | ISS | |
| UniRef100_G7ID22 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lateral signaling target protein-like protein n=1 Tax=Medicago truncatula RepID=G7ID22_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D8F6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D8F6 related cluster n=1 Tax=unknown RepID=UPI000233D8F6 | SoyBase | E_val: 0 | ISS |
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Glyma20g30530 not represented in the dataset |
Glyma20g30530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g37110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g165400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g30530.1 sequence type=CDS gene model=Glyma20g30530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGACCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTACTTAAATATGGTCGTAAGGGAAAACCTAAGTTTTGTCCGTTTAGACTTTCCAATGATGAATCATCTTTAATCTGGATATCAAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCAGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTGCGTCCTGAGAAGGACTATCTATCTTTTTCACTTATTTATAACAACGGGAAGCGATCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGTAGAAGTGTGGATTGCTGGTCTTAAGGCGCTGATATCTTCCGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTACATCTTGATGACAGTAGAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGTTAGTGCTTCACGAGACCTCAGTTCTCCAGACGTTTATGTTAGTCTGGCAAATACTTCTCCACATTCCTTTCACTCTGAGAATACTTTAAATTTTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCACCCAGCACATCCAGTCATGGATCTGCACCTGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAGTGCTAGTTATTTTAGCCCAAGGACAGATATTCTCCTCCCCAGGCCATTGGAGTCCAATGTGGTTTTAGATGTGCTTCAAATAGCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAAGGTGAACTTTTTACATGGGGTGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCAATGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAGCTCTTCACATTTGGTGATGGAACATTTGGTGTCTTAGGCCATGGAGATAGGGAAAATGTTTCGTATCCTAGAGAAGTAGAATCTTTATCTGGGTTGAGGACAATAGCTGTTGCTTGTGGAGTGTGGCATACTGCAGCTATCATAGAGGTTATTGTGACACAATCAAGTGCTAGCGTATCATCAGGTAAATTGTTTACTTGGGGTGACGGAGATAAAAACCGCCTTGGACACGGAGACAAGGACGCCCGGCTTGAACCAACTTGTGTACCTTCACTTATTGAAGACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACAGTAGGCCTGACAACATCTGGACGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCCGATGGAAAACTGCCGTGTTTGGTTGAAGACAAGTTTGCAGGAGAATCTGTTGAAGAAATTGCATGTGGAGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTTCACTTGGGGAAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAATCACCTACTTTAGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTTCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCTAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGGTTGCAGAATTGGGCAACAATAATCGGAGGAATGCTATGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAGAAGCCTGAGCTAAGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAACTTGATAGTAAGGCAGCTAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCTCAACCACAGTCTTTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTATCGATTTGAAGCGAACAGCTCCAAGACCTGTTCTGACATCATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCGGGACTTTCCTTCTCTAAAAGTATTACTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAGGAAGTGTTGAAGTTACGCGGTCAGGTTGAGACCCTGAGACAGAGATGCGAACTGCAAGAATTGGAGCTTCAAAGGTCAACAAAAAAAGCTCAGGAAGCTATGGCAGTGGCTGCAGAGGAATCCGCGAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAAATCTGTCTGAGAGGCTTCCTCCCGGTGCTTATGATGCTGAAAACATCAGACCAGCTTACCTGCCAAATGGTTTGGAGCCAAATGGCATCCGCTATCCAGACTTAAATGGTGAACACCACACCAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATAGGACTTGAATCATCCCTGATGAATAGAACCGATGGCACTTTGCCTGGAAGCTATGGAGCTAATCATTACCAGCAAAACCGGGGATCTGTGACCTCTAATGGGACAGATGATTACCCGAACGTTAAATTGCCAAATGGCAGCGGCATGATTCAGCCAAGCAGCAGTACTGTGTCAGATACGGTTGATGGTGGTAGGGATTCTGGAGATTTCCAAGATGATGAGAGTGGTTTGAGATCAAGGAACGCCATAGTGCCTGCTAATAGTAATCAAGTTGAGGCAGAATGGATTGAACAATATGAACCTGGTGTCTACATTACACTGGTTGCCTTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGTGATAGGGTATACAAAAGGTACAATGTTTGA
>Glyma20g30530.1 sequence type=predicted peptide gene model=Glyma20g30530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADLVSYRNADRDIDQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEVEVWIAGLKALISSGQGGRSKIDGWSDGGLHLDDSRDLTSNSPSESSVSASRDLSSPDVYVSLANTSPHSFHSENTLNFERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKSASYFSPRTDILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVVQPRLVEAMASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAIIEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIEDNFHRIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKFAGESVEEIACGAYHVAVLTSKNEVFTWGKGANGRLGHGDVEDRKSPTLVEALKDRHVKYIACGSNYSSAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVAELGNNNRRNAMPRLSGENKDRLEKPELRLTKTAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQPQSLLQLKDVVLSTAIDLKRTAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVLKLRGQVETLRQRCELQELELQRSTKKAQEAMAVAAEESAKSKAAKEVIKSLTAQLKNLSERLPPGAYDAENIRPAYLPNGLEPNGIRYPDLNGEHHTRAESISGSSLASIGLESSLMNRTDGTLPGSYGANHYQQNRGSVTSNGTDDYPNVKLPNGSGMIQPSSSTVSDTVDGGRDSGDFQDDESGLRSRNAIVPANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYKRYNV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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