Report for Sequence Feature Glyma20g30300
Feature Type: gene_model
Chromosome: Gm20
Start: 38966030
stop: 38968659
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma20g30300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G52850 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr5:21414935-21417616 REVERSE LENGTH=893
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF131 Panther
PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7IDY0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IDY0_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1NGY7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NGY7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma20g30300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma20g30300
Paralog Evidence Comments
Glyma10g37450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma20g30300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.20g163300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma20g30300
Coding sequences of Glyma20g30300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma20g30300.1 sequence type=CDS gene model=Glyma20g30300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTATGTAGTAAAACAGTTCCTAACACTTTTTCTCCATGGCGCTTCCGAGAAACTTGCTTGCAAGTTCTCTCTCTCTGCAACTCACAATCCCTCAAGGAGGGAGCATGTGTTCATTGCCCAATTATCAAAGCTCTTGAATTGTTTGACATGATGCTTGGTTCTGGTCAATGCCCCAATGAGTTTACCTTGTCCAGTGCCTTAAGATCGTGTTCTGCCTTGGGAGAGTTTGAGTTTAGGGCTAAAATCCATGCCTCTGTGGTAAAACTTGGGTTGGAGCTGAATCATGTTCTGGCACCAAAGCTGCTTGTGTTTGTGAAGGATGGTGATGTTATGTCTTGGACAATAATGATCTCTTCATTGGTGGAGACTAGTAAATTGAGTGAAGCTCTGCAACTCTATGCCAAAATGATTGAAGCTGGTGTTTACCCGAATGAGTTCACATCTGTTAAACTCTTAGGCGTGTGTTCTTTTCTTGGTTTGGGGATGGGTTATGGGAAAGTACTGCACGCACAGTTGATCAGATTTGTTGTGGAAATGAATTTGGTGTTGAAGACAGCCATTGTTGATATGTATGCAAAATGTGAATGGGTGGAAGATGCTATTAAGGTCTCAAATCAGACACCTGAATACGATGTGTGCTTATGGACTACCGTAATCTCTGGATTTATTCAAAATTTGCAGGTTAGAGAGGCTGTCAATGCATTGGTTGATATGGAATTGTCTGGAATTCTACCAAATAATTTTACATATGCTAGTTTATTGAATGCTAGCTCCTCAGTTTTATCATTGGAGCTTGGGGAACAGTTTCATTCAAGGGTTATCATGGTGGGATTGGAGGATGATATTTATCTAGGAAATGCACTGCTTTTTAGAGGGATAGCCTTGCCGAATGTCATCTCTTGGACTTCTTTGATTGCTGGTTTTGCAGAACATGGTTTAGTAGAAGAATCTTTTTGGCTGTTTGCTGAGATGCAAGCAGCTGAAGTGCAACCAAATTCCTTTACACTATCTACTATCCTTGGAAATCTATTATTAACAAAGAAACTCCATGGACATATCATAAAATCAAAAGCAGACATAGACATGGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGACAGATGAAGCATGGGCTGTTATTGGCATGATGAACCATAGAGATATCATCACAAACACAACTTTAGCAGCAAGATTAAACCAACAGGGAGATCACCAAATGGCATTAAAAGTCATCACTCACATGTGCAATGATGAGGTTAAGATGGATGAATTTAGCTTGGCAAGTTTTATATCAGCTGCAGCTGGCTTAGGCACTATGGAAACTGGAAAGCTACTCCATTGTTATTCTTTCAAATCAGGTTTTGGGAGATGTAACTCGGCTTCAAATAGCCTAGTTCACTTGTACAGCAAGTGTGGTAGCATGTGCAATGCATGCAGAGCTTTCAAAGATATAACTGAGCCAGATACAGTGTCATGGAATGTTTTGATCTCTGGATTGGCATCAAATGGACATATATCCGATGCCCTTTCTGCCTTTGATGACATGAGGTTAGCGGGAGTTAAACTTGATTCTTTCACATTCTTATCACTGATTTTTGCTTGCAGCCAAGGTAGTTTATTGAATCTGGGTCTTGATTATTTCTATTCCATGGAAAAAACATATCATATAACACCAAAGTTGGATCACCATGTGTGTTTAGTTGATCTCCTCGGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCTTTCAAGCCGGATTCTGTAATTTATAAAACCTTATTAAATGCTTGCAACGCACATGGAAACGTGCCACCGGAAGAAGATATGGCAAGGAGATGTATTGTTGAGCTTCATCCATGTGATCCTGCAATATACTTGCTGCTTGCAAGCTTGTATGACAATGCTGGACTCTCTGAGTTCAGTGGCAAGACTCGCAAGCTGATGAGAGAAAGAGGCTTAAGAAGAAGTCCAAGGCAGTGTTGGATGGAGGTCAAAAGTAAGATTTATCTCTTCTCTGGAAGAGAGAAGATAGGTAAGAATGAGATTAATGAAAAGCTAGAGTTTCTTATAACTGAAATAAAGAATAAAGGGTATCCATACCAAGAGAATGAAGATTATGTACCAACTTCGGCTCCAATACGCAAAAACAAAAATTCACTTATCTGCACTCACTGTCATTCTTTTATTATGCTTGTGACACAATTTGTTGATAGAGAGATAATTGTGAGGGATAGGAAACGATTCCATTTCTTTAAGGACGGCCAGTGTTCATGTAGAGGTCACTGA
Predicted protein sequences of Glyma20g30300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma20g30300.1 sequence type=predicted peptide gene model=Glyma20g30300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLCSKTVPNTFSPWRFRETCLQVLSLCNSQSLKEGACVHCPIIKALELFDMMLGSGQCPNEFTLSSALRSCSALGEFEFRAKIHASVVKLGLELNHVLAPKLLVFVKDGDVMSWTIMISSLVETSKLSEALQLYAKMIEAGVYPNEFTSVKLLGVCSFLGLGMGYGKVLHAQLIRFVVEMNLVLKTAIVDMYAKCEWVEDAIKVSNQTPEYDVCLWTTVISGFIQNLQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEDDIYLGNALLFRGIALPNVISWTSLIAGFAEHGLVEESFWLFAEMQAAEVQPNSFTLSTILGNLLLTKKLHGHIIKSKADIDMAVGNALVDAYAGGGMTDEAWAVIGMMNHRDIITNTTLAARLNQQGDHQMALKVITHMCNDEVKMDEFSLASFISAAAGLGTMETGKLLHCYSFKSGFGRCNSASNSLVHLYSKCGSMCNACRAFKDITEPDTVSWNVLISGLASNGHISDALSAFDDMRLAGVKLDSFTFLSLIFACSQGSLLNLGLDYFYSMEKTYHITPKLDHHVCLVDLLGRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNAHGNVPPEEDMARRCIVELHPCDPAIYLLLASLYDNAGLSEFSGKTRKLMRERGLRRSPRQCWMEVKSKIYLFSGREKIGKNEINEKLEFLITEIKNKGYPYQENEDYVPTSAPIRKNKNSLICTHCHSFIMLVTQFVDREIIVRDRKRFHFFKDGQCSCRGH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
