SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G25700 | AT | Annotation by Michelle Graham. TAIR10: beta-hydroxylase 1 | chr4:13094142-13095866 REVERSE LENGTH=310 | SoyBase | E_val: 3.00E-143 | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotene metabolic process | SoyBase | N/A | ISS |
| GO:0016123 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xanthophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0010291 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carotene beta-ring hydroxylase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| PF04116 | PFAM | Fatty acid hydroxylase superfamily | JGI | ISS | |
| UniRef100_G4Y9K0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-carotene hydroxylase 4 n=1 Tax=Glycine max RepID=G4Y9K0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G4Y9K0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Beta-carotene hydroxylase 4 n=1 Tax=Glycine max RepID=G4Y9K0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g30230 not represented in the dataset |
Glyma20g30230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g37560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g162600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g30230.2 sequence type=transcript gene model=Glyma20g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGATGTAAGAAGTTTCCCACAGCTGTAGATGTTCCACGAGGTTATTTGTATTGAAGTGAACCGACCACCAGCACCCCCTCATTGTTGCACAATACACAAAGTTGTGGTCTAAATGCAACCTTACCCCTCTCTTTGAATTAGCTTCACTTCACAGTCGCACCAACCTCTCTCCCTTACTCGCACGCGAACGATCACATACAACACAAACAGTACTCTGCCTCTTGGTGCAAATCGAACCTAGAAACCTCAATCCCTTACCCTTCCATGGCGGCAGGACTCTCCACCGCCGCAAACTTAAAGCCCTACAATCTCCTCCAACCCCCAATCCCTATATCTAAACCAACCCCACCACTCTTCTTCAACCCCTTAAGATGTTTCCGTCGCAGTACAATCCTTCGAGTTCGACCCAGAAGAAGAAGAATGAGTGGCTTCACCGTTTGCGTCCTCACGGAGGATCCCAAACAGATAAAAAAGGATGAACAAGAAGAACAAGTGAATCCTCAAGTTGTGTCGGCACGAGTGGCAGAGAAATTGGCGAGAAAGAAGTCCCAGAGGTTCACCTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAACTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCGATAATTAACGCTGTCCCTGCGATCGTTCTTCTCTCATACGGTTTTTTCCACAAGGGTCTGGTCCCTGGCCTCTGTTTTGGTGCAGTGAGGCCTTGGAATCACGGTGTTTGGGATGGCCTACATGTTTGTCCACGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTTAGAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAGGAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATGAGGTCCGGTTCATGACCATGCCACTGGTATTAGCTAGACTTGTTTGAAAGAATTGAGGGTAGAGAAAGGGAAACAATTCAATTAATGAATGAAATGATTTGAATCTTTTTTTTTTCTTTCATACAGCTATTCATATTATAATAGCAGAGCATATAACAGAAAAATAGGGTTAAACGTTTATAGATGTATAAACAGATCAAACATGTGTCAATGGAAATGTTCTAATTGCAGCATAATACAGCTGGATATTTAAAGCCATTTAAAAGCCTATTTGTAATTGCAAATCTGTGATTCTTTCCTTAATTAGAATATAACAGCTGCAGCATAGGAATTTAAGGTAGTTTTGCTAATTTCCAGGGCTGAAAATCAGCTTGTATTTATTTGTAATAAGCAATATTCATAGGG
>Glyma20g30230.1 sequence type=CDS gene model=Glyma20g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCAGGACTCTCCACCGCCGCAAACTTAAAGCCCTACAATCTCCTCCAACCCCCAATCCCTATATCTAAACCAACCCCACCACTCTTCTTCAACCCCTTAAGATGTTTCCGTCGCAGTACAATCCTTCGAGTTCGACCCAGAAGAAGAAGAATGAGTGGCTTCACCGTTTGCGTCCTCACGGAGGATCCCAAACAGATAAAAAAGGATGAACAAGAAGAACAAGTGAATCCTCAAGTTGTGTCGGCACGAGTGGCAGAGAAATTGGCGAGAAAGAAGTCCCAGAGGTTCACCTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAACTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCGATAATTAACGCTGTCCCTGCGATCGTTCTTCTCTCATACGGTTTTTTCCACAAGGGTCTGGTCCCTGGCCTCTGTTTTGGTGCAGGCCTTGGAATCACGGTGTTTGGGATGGCCTACATGTTTGTCCACGATGGATTGGTTCATAAGAGATTCCCTGTGGGTCCCATTGCCAACGTGCCCTACTTTAGAAGAGTTGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAACGGGGTGCCATATGGCTTGTTTTTGGGACCAAAGGAAGTTGAAGAAGTGGGAGGGCTGGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATGAGGTCCGGTTCATGA >Glyma20g30230.2 sequence type=CDS gene model=Glyma20g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCAGGACTCTCCACCGCCGCAAACTTAAAGCCCTACAATCTCCTCCAACCCCCAATCCCTATATCTAAACCAACCCCACCACTCTTCTTCAACCCCTTAAGATGTTTCCGTCGCAGTACAATCCTTCGAGTTCGACCCAGAAGAAGAAGAATGAGTGGCTTCACCGTTTGCGTCCTCACGGAGGATCCCAAACAGATAAAAAAGGATGAACAAGAAGAACAAGTGAATCCTCAAGTTGTGTCGGCACGAGTGGCAGAGAAATTGGCGAGAAAGAAGTCCCAGAGGTTCACCTATCTCGTTGCGGCTGTCATGTCTAGCTTTGGCATCACCTCTATGGCAGTCTTCGCAGTTTATTATAGATTCTCTTGGCAAATGGAGGGTGGAGATGTTCCTTGGTCTGAAATGCTAGGCACATTTTCCCTCTCCGTCGGTGCTGCTGTGGCTATGGAACTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGCTTCCTTGTGGCACATGCACGAGTCACACCATCGACCAAGAGAGGGACCGTTCGAGCTTAACGACGTTTTTGCGATAATTAACGCTGTCCCTGCGATCGTTCTTCTCTCATACGGTTTTTTCCACAAGGGTCTGGTCCCTGGCCTCTGTTTTGGTGCAGTGAGGCCTTGGAATCACGGTGTTTGGGATGGCCTACATGTTTGTCCACGATGGATTGGTTCATAA
>Glyma20g30230.1 sequence type=predicted peptide gene model=Glyma20g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAGLSTAANLKPYNLLQPPIPISKPTPPLFFNPLRCFRRSTILRVRPRRRRMSGFTVCVLTEDPKQIKKDEQEEQVNPQVVSARVAEKLARKKSQRFTYLVAAVMSSFGITSMAVFAVYYRFSWQMEGGDVPWSEMLGTFSLSVGAAVAMELWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIVLLSYGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLGPKEVEEVGGLEELEKEISRRMRSGS* >Glyma20g30230.2 sequence type=predicted peptide gene model=Glyma20g30230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAGLSTAANLKPYNLLQPPIPISKPTPPLFFNPLRCFRRSTILRVRPRRRRMSGFTVCVLTEDPKQIKKDEQEEQVNPQVVSARVAEKLARKKSQRFTYLVAAVMSSFGITSMAVFAVYYRFSWQMEGGDVPWSEMLGTFSLSVGAAVAMELWARWAHRALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIVLLSYGFFHKGLVPGLCFGAVRPWNHGVWDGLHVCPRWIGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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