SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G09980 | AT | Annotation by Michelle Graham. TAIR10: Methyltransferase MT-A70 family protein | chr4:6247978-6252030 REVERSE LENGTH=963 | SoyBase | E_val: 0 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0032259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| GO:0008757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity | SoyBase | N/A | ISS |
| KOG2097 | KOG | Predicted N6-adenine methylase involved in transcription regulation | JGI | ISS | |
| PTHR13107 | Panther | KARYOGAMY PROTEIN KAR4-RELATED | JGI | ISS | |
| PF05063 | PFAM | MT-A70 | JGI | ISS | |
| UniRef100_G7IEN6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase-like protein n=1 Tax=Medicago truncatula RepID=G7IEN6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DA4C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA4C related cluster n=1 Tax=unknown RepID=UPI000233DA4C | SoyBase | E_val: 0 | ISS |
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Glyma20g30130 not represented in the dataset |
Glyma20g30130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g37675 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g161800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g30130.1 sequence type=CDS gene model=Glyma20g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCGAGCGACAGTGGTCGCGGTTACTCGAAGCGCGAGCGGGACGACGAGGATTGGGAGTTTAGTGATAAGCGGAAGGATAGGTCTCGGAAGTTCGGTGCCAATGGCGGGGACGAGGGCGAGGGTTCCGACGGAAGCGCGAGAAGGAAGCGTTCTAGCAGAACCACCACCGATGGCGACGATTACGATTCGCGCTCCAAGCAAGTGGCCAAGAAGAGGCTGGAGGAGAGCACCCTGGAGAAGTTGAGCAGTTGGTATGAGGACGGGGAATTGGATGATAAGGCCGCGAGGAAGCGCGGCGGTGACGGTGAGTTTCATGAGAGTGTGGTGTGTAAAGAGGACGGTAAGGGTGAGGGCGGCGGTGGCGGCGGTGGTAGGGAGAAGGGTGGGCATGAGGGTAAGAGTTCGAGGAGGAAGTGGGATGAAGTTGATGTTGGTAGTGTGAGGAAGGTGCAAGATGAGAAGGTGGATTTGAGGAGTGGGAAGCATGACAGTTCTAGGGATAGGGAGAGGGGTGGATCTGCTAGGAGTGAGCATGGGGAGAGTAAAACCTCTGGTGGTGGTGATAGGGTTGTGAAGTCTACTAGTAAGGAGGATAGAAGAGGGGATTCTGAGAGAGGGAAGAGTAAGGGGAAGTCGGATTCGGGGGATGTTGGTCGTGAGGAGAGGGTTGAGAAGCCCAGGCACCATAGGGCGGCTGCTGGTTATGATGTGGCTGAAACCTGGGATAGGTCGTTGAATGCAGAGGAGGATGGACATGTGCGGGTTAGGGATAAGAGTACCAGGGAAAGTGGGAACTCAAACAGGTCGAGGACGCCGGAGAAGAGTGGAAAACGCCATCAAGATTTGGAGAACTCTGAGGTGGATTATGAAAGAAGTAGTAGCTTTAAAAGGAAGGAGCATGAAGGTGATGGCTATAAGGATGATAGATCCAAAGGGAAAGATGATACTTGGAATGATAGGAGGAAGGATCGGGAAAGTTCTAAAGAAAGTTGGAAGAGGAGGCAGCCGAGCAACACTGACAAAGATTCAAAAAATGAAGAGAGTGCTTTTGATGACAACAGAGATTGGGAGTTGCCTAGACATGGTTATGAGAGGATGGATAATGAAAGGCCTCATGGACGGTTTGGTGGTAGAAAAGATGTGAGCAGGGGGGAAGCTGTTAAAACATCCACTAAGTTTGGGATTTCGAATGACAACTATGATGTGATAGAGATCCAGACCAAGTTTTATGACTATGGGAAATCAGAATCTATGTCCAACCATACCAAGAGAACTGAAACTCATCAGCAGTACATTGCTAAATCAGGTGCTAATGATGAAGAATGGGCATACCATCAAGATGAAAGAGGAAGGAAGAGTGATTTATCTGGTTCTGGGACACCTGGTGAAGACCTGAAGGAGAGATATGCTGATGATGACTATGATTTTTATGGGGGAAGAGGAAGAGGTCAGAAAGGTGGTGTATCTGCCCGTGGTACTGGTGGCCAAAGTTCTAGTACTGGTGGCTCACAGCCTCAATATGGAAATCCAGAGTCTGGATCCTTTAACCGAGCTGGTGCACAAGGAATAAAAGGGAACAGGGTTGGAAGAGGAGGAAGGATTAGGCCTACTGGGAGAGACAATCAGCAAGTTGGAATACCACTGCCAATGATGGGATCACCCTATGGACCTCTTGGTATGCCTCCGCCTGGGGCAATGCAGCCTCTTTCACATGGTATATCACCTGCTCCTGGTCCACCAATTTCCCCTGGAGTCTTCATGTCACCATTTACTCCTGGTGTTTGGCCTGGAGCACGAGGTGTCGATATGAATATTATAGGTGTACCACCTGCAGTGTCTCCTGTACCCCCAGGTCCACGATTTAATGCTGCTAATATAGGGAACCCACCAAATCCTGTAATGTATTATAACCAATCAGGCCCTGGAAGGGTAATGCCCCCAAGCATTTGTACTCCTGGTTTTAATCCTACAGGATCAATTGGTCGAGGAGCCCCACCTGATAAAGCTCCAGGGGGATGGGCTCCTCCTAAAAGTAGTGGAACTCTTGGTAAAGCTCCTTCCAGAGGTGAACAGAATGATTATTCTCAAAACTTTGTTGACACTGGTCTGCGGCCACAGAATTTCATTAGGGAGCTTGAGCTCACAAATGTTGTGGAGGACTATCCTAAGCTTAGAGAGCTTATACAGAAAAAGGATGAGATTGTGGAAAAATCTGCATCTGCTCCTATGTATTATAAGTGTGATTTGAAAGAGTTTGAACTATCTCCGGAGTTCTTTGGAACAAAGTTTGATGTCATTCTTGTAGATCCCCCATGGGAGGAGTATGTGCACCGCGCTCCTGGTGTTGCTGATCACATGGAGTACTGGACATTTGAAGAAATAATGAATCTCAAGATTGAGGCTATAGCAGATACGCCTTCTTTCATCTTCCTTTGGGTGGGTGATGGTGTAGGCCTTGAACAAGGTCGTCAATGTCTAAAAAAGTGGGGTTTTCGGAGGTGTGAAGATATATGTTGGGTAAAGACAAACAAAAGTAATGCAACTCCAGGACTGCGGCATGATTCACATACTTTATTTCAACATTCAAAGGAACACTGCTTGATGGGCATAAAAGGAACAGTTCGTCGAAGTACTGATGGACATATAATTCATGCCAATATTGACACGGATGTCATTATCGCTGAAGAACCTCCTTATGGTTCAACTCAAAAGCCTGAAGATATGTACAGGATCATTGAGCACTTTGCCCTTGGAAGGAGGAGACTAGAACTATTTGGTGAAGACCACAATATCCGAGCCGGTTGGCTGACTGTTGGTAAAGAATTGTCATCTTCAAATTTTAATAAAGAGGCATATGTGAAAAGTTTTGCTGACAAAGATGGGAAAGTTTGGCAAGGAGGTGGGGGAAGAAATCCACCTCCAGAGGCACCTCATCTGGTGGTGACTACTCCTGATATAGAGGCTCTTAGGCCAAAGTCTCCAATGAAGAACCAACAACAACTGCAGCAGCAGAATTCAGTATCCATTTCGTTGACGTCAGCTAGTGCATCAAACAGAAGGCCTGCTGGGAATTCGCCGCAGAACACAACTGCACTAGGCGTCAACCAAGACGCTTCTAGCTCAAACCCTTCTACTCCAGCTCCTTGGGGTTCACCTCTGGAGGGCTTCAAGGGACGTGAAGGCTCTGTATTGCCTTCAGATGATAAAGTAATGGATATGTACGGGTTTCATGGACCAGCATCAGCAAACTATCTAGATTTTGAATCATACAGACAAATGAATCTGTTGTAG
>Glyma20g30130.1 sequence type=predicted peptide gene model=Glyma20g30130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSSDSGRGYSKRERDDEDWEFSDKRKDRSRKFGANGGDEGEGSDGSARRKRSSRTTTDGDDYDSRSKQVAKKRLEESTLEKLSSWYEDGELDDKAARKRGGDGEFHESVVCKEDGKGEGGGGGGGREKGGHEGKSSRRKWDEVDVGSVRKVQDEKVDLRSGKHDSSRDRERGGSARSEHGESKTSGGGDRVVKSTSKEDRRGDSERGKSKGKSDSGDVGREERVEKPRHHRAAAGYDVAETWDRSLNAEEDGHVRVRDKSTRESGNSNRSRTPEKSGKRHQDLENSEVDYERSSSFKRKEHEGDGYKDDRSKGKDDTWNDRRKDRESSKESWKRRQPSNTDKDSKNEESAFDDNRDWELPRHGYERMDNERPHGRFGGRKDVSRGEAVKTSTKFGISNDNYDVIEIQTKFYDYGKSESMSNHTKRTETHQQYIAKSGANDEEWAYHQDERGRKSDLSGSGTPGEDLKERYADDDYDFYGGRGRGQKGGVSARGTGGQSSSTGGSQPQYGNPESGSFNRAGAQGIKGNRVGRGGRIRPTGRDNQQVGIPLPMMGSPYGPLGMPPPGAMQPLSHGISPAPGPPISPGVFMSPFTPGVWPGARGVDMNIIGVPPAVSPVPPGPRFNAANIGNPPNPVMYYNQSGPGRVMPPSICTPGFNPTGSIGRGAPPDKAPGGWAPPKSSGTLGKAPSRGEQNDYSQNFVDTGLRPQNFIRELELTNVVEDYPKLRELIQKKDEIVEKSASAPMYYKCDLKEFELSPEFFGTKFDVILVDPPWEEYVHRAPGVADHMEYWTFEEIMNLKIEAIADTPSFIFLWVGDGVGLEQGRQCLKKWGFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDVIIAEEPPYGSTQKPEDMYRIIEHFALGRRRLELFGEDHNIRAGWLTVGKELSSSNFNKEAYVKSFADKDGKVWQGGGGRNPPPEAPHLVVTTPDIEALRPKSPMKNQQQLQQQNSVSISLTSASASNRRPAGNSPQNTTALGVNQDASSSNPSTPAPWGSPLEGFKGREGSVLPSDDKVMDMYGFHGPASANYLDFESYRQMNLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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