SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52440 | AT | Annotation by Michelle Graham. TAIR10: Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:21286896-21288613 FORWARD LENGTH=260 | SoyBase | E_val: 2.00E-64 | ISS |
| GO:0009306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein secretion | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0045038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0033281 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: TAT protein transport complex | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| GO:0009977 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: proton motive force dependent protein transmembrane transporter activity | SoyBase | N/A | ISS |
| PF02416 | PFAM | mttA/Hcf106 family | JGI | ISS | |
| UniRef100_I1NGW9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGW9_SOYBN | SoyBase | E_val: 6.00E-172 | ISS |
| UniRef100_Q94G16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sec-independent protein translocase protein TATB, chloroplastic n=1 Tax=Pisum sativum RepID=TATB_PEA | SoyBase | E_val: 3.00E-109 | ISS |
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Glyma20g30120 not represented in the dataset |
Glyma20g30120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g37690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g161700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g30120.1 sequence type=CDS gene model=Glyma20g30120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACACGATCCTTGGTAATGGCTTCTTCATCAATGTCATGTCCGAAGCTGGGGAATTGTGCAGTGTCACATACAAAGTTCCAAGCTTTTCATCTCTCTTCAATGTTCTCTCCACTGGATCGAGGCCTTTTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAACCAAAACCTCTTCTTCACATAGATAGAAAGGGAGGGTGTAAGGGTAAAGTGGTATATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGCATTTCAACCCACCATTAGAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACACTTGAGCGGGAGATTGGTCTTGATGACAATTTAAGTCCTACCCAGAACACATACAATTCCAATGTACGTAATACCACACCAACTTCATCATCCACTGTTGACCCCAATGGCACGCTAGACCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTCCCAAGGAAGGCGAGAATGGGCCTCAAATCCAGCCTCCTGCTGAGGAAACAGCTACTACAGTGCCTCCACCTCTGAAGCCAGAAAGTGAAACGTAA
>Glyma20g30120.1 sequence type=predicted peptide gene model=Glyma20g30120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTRSLVMASSSMSCPKLGNCAVSHTKFQAFHLSSMFSPLDRGLFSPWSGLKHLGISAKPKPLLHIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNVRNTTPTSSSTVDPNGTLDPTKAYSSEEYLKITEEQLKASAAQQQGQTPPKEGENGPQIQPPAEETATTVPPPLKPESET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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