Glyma20g30095 - SoyBase

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Report for Sequence Feature Glyma20g30095

Feature Type:	gene_model
Chromosome:	Gm20
Start:	38818940
stop:	38822259
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g30095

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00690	AT	Annotation by Michelle Graham. TAIR10: UB-like protease 1B \| chr4:281313-283129 FORWARD LENGTH=348	SoyBase	E_val: 5.00E-11	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008234	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type peptidase activity	SoyBase	N/A	ISS
KOG3246	KOG	Sentrin-specific cysteine protease (Ulp1 family)	JGI		ISS
PF02902	PFAM	Ulp1 protease family, C-terminal catalytic domain	JGI		ISS
UniRef100_G7L5H3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ulp1 protease family C-terminal catalytic domain containing protein n=1 Tax=Medicago truncatula RepID=G7L5H3_MEDTR	SoyBase	E_val: 4.00E-39	ISS
UniRef100_UPI000233DA4B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DA4B related cluster n=1 Tax=unknown RepID=UPI000233DA4B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g30095

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g30095 not represented in the dataset	Glyma20g30095 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g30095

Paralog	Evidence	Comments
Glyma10g37740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g30095 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g161400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g30095

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g30095

Limit To All Plant Sequences

>Glyma20g30095.2   sequence type=transcript   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTACAATTTTTTCATTATTTAAGTCACGTAACTACAGTAATTTATAGGATAGAAAAATCATATTAAAGAATTGTAGAGTGCAATAAACGGTTTGATGATTCCATAAAAGGAGACTTGAGAAGAAAGAAACGACGGTCGGGGCAGTTGTGTCATGTCAAGTGCGTGTGTTGAGAGTTAAGAATGGGACGTAAGAGGAAGAATCGATCTAACAGTGCCACAGCCCCACCCTTCTATGTAGTTCCATCCCGGGGCACTGAGCTTTGATCCTAACAGATGCTGCAAACTGCTAAAACCCCACAGTTCTAGGCTCTAGCCAAATCCTAGTGATTTGATCATGTATTATTCAATTAGCTATCAGGGGCTCTGAAAATAGGGTACCTGTGCCATTGGATACTTCCAACAGTCAAGAAGTAAAGAAGGCTGTGGACAAAAAATCCCTGTCTATGCTGAACAAGCTATATTACTTTTGTACTCGTCGACCAAAGGCACATGAGGAATTGAGTGTCTTGGTTAGCATGTTTGGCGTTTACTTAAACCGCAAGGATGGCTATACCATGAAACCAAAAGGATGGGTCAATGATATGGTGATTTTAGCTGCTGGAAAGATAATGATGGAAGAGGAGAAGGCAACAAATGGGGTTGTCACTCGTCATATGTTTAGCCCACAATTTGTGAATAAGGTGATATGCGATTTAAATCAATCTAATGAAGATAGCTACAAGCCTTGGTGTATTGAGGATGTATCTCTATTCATCTTGCCGAGTAAACTGGGTTATGATATTAATCAGTGCAAATTGATTTTTGCACCAACTTTGTTTGAGGAGCATTGGTCTTGTTATGCATTTGAGCCCAAGGACAAAATTTTGTATGTGTTAGATTCGATGCATGATAAATTCTCAACCAGAAAGAAGAACTTGGATGATGCAATGAAACGTCGTTTTGAGGAGCTGCTGGTATTGATGAATCCTGGTTTGACCAAAGAGAATGCATCAATAACACTTCTTCGCGTTGATGTTCCTAGGCAGCAAAACATTCATGATTGTGGCATCTATGTGCTGAAATACATGGAAATTTGGGATGGATCAATAAAATGGCAAGACAAAACCATGCCTGATTATCAACGCAAAGAAATCTTGAAGTTTCGGCAAAGCCTTATATGTGGATGGGTTCAACATCCTAAAAATGAGGTTAGAGAAGAGCTTTTGAAGGCTGCAGGACTATGGGGGAAATTATGCTGACTGACATTGACTATATCAAGTTAACACGTCTACTAAGAGATTTCGGTTATACATAGTTAATTTTTAAAAAAATGAAATACAGTTTTAATTCTTCATCTGGGGCACCCAAACTTAATATGAAAATGTAACACCTAGTTCACACTTTACTTGTATCTTGGGCATCCAAACTTTAATGCCCTGTGTACTCCAACACGAATATACTAGTTTCTATAAAGTTGTTACACATTTTTCTCAGCTGGTTTGTATGGGGTAAATATAATAACTTCCTTCCTATGCTTTTCTCACCATTTACTGTCTTTTGGGTTAGTTTACTGTGATTTGTAGGGGTCATTACTAATGCCCTCCTCTAAATATTACATCTCCTTTGTTGTTG

>Glyma20g30095.3   sequence type=transcript   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTGTTTCTGCGATTCATTCATTCGGTGCTCGAATTAACGATACTAATGTTTATGTTATGCTTCCATTTCCATAAAGAAAATGAATCACCTCCTTCTTTCTTCACCACTTTCAACATTCATTATTATTATCTTTTTCCATAATAATTAGATACTGTATTATTTTAATTTTGTCTTCCTTGTTTGTAACATTTTTTGGGATGTGTAATTTTTTTCTTCTTTCTGTTTTGCCAAACAGTGAGAGTTAAGAATGGGACGTAAGAGGAAGAATCGATCTAACAGTGCCACAGGTATACACATTTTATCTATCTACTTGCTTTAGACTCAACAACAGTAGTGGTAGCTTCAGTTACTTGCTTGAAGCATGAGTTAGCTGTACTTATACATGTTTCAGATTCAGAACCTATACCTGTCCTGTACCAATACCAGTACCTATACCTTCGTTACTTTAATATTTCCATTATGAGTGTGTACTCTACTGGTATAAATTCAGACTTCAGAACTTATGTTAGTTAAGCTTGACTCTACCCTAGTACATTAACGTGACCATTTGTGCTTCTCTGTATCAACAGCTGGTAGCATCCCTGAAGCCGCTCCAAGTGAGGCAATTGAACCTTCTAGCAGTGGTAGTTGTGACAAAACCTCCTTCCTTTAATGTGCCTGTTTCGAAATCCTTTTTGGCTAATAAATTCTCTAATGTTTGATTTCTTCTAACTTGTAATCCTTAATTGCAAGACTAAATTTGTGCTAGTGTGCCTTGATTCTATGACATAAATGAGAGTCACATGATCAATTTTTTTGGGTACAATGATGGCATGATGAGGGCAGAACTAGGAAATTTTAGGCATGCTTGCTCACATTGATTATTAAGATTTTCATAGAGGAGACAGATTTCATCTATTTGAAGGGACTTATTTGAAAATTTTTGCATAGTATTCAAGGAAAAGAAAATGTTTGCGTGTGTGGTTGCAGCCCCACCCTTCTATGTAGTTCCATCCCGGGGCACTGAGCTTTGATCCTAACAGATGCTGCAAACTGCTAAAACCCCACAGTTCTAGGCTCTAGCCAAATCCTAGTGATTTGATCATGTATTATTCAATTAGCTATCAGGGGCTCTGAAAATAGGGTACCTGTGCCATTGGATACTTCCAACAGTCAAGAAGTAAAGAAGGCTGTGGACAAAAAATCCCTGTCTATGCTGAACAAGCTATATTACTTTTGTACTCGTCGACCAAAGGCACATGAGGAATTGAGTGTCTTGGTTAGCATGTTTGGCGTTTACTTAAACCGCAAGGATGGCTATACCATGAAACCAAAAGGATGGGTCAATGATATGGTGATTTTAGCTGCTGGAAAGATAATGATGGAAGAGGAGAAGGCAACAAATGGGGTTGTCACTCGTCATATGTTTAGCCCACAATTTGTGAATAAGGTGATATGCGATTTAAATCAATCTAATGAAGATAGCTACAAGCCTTGGTGTATTGAGGATGTATCTCTATTCATCTTGCCGAGTAAACTGGGTTATGATATTAATCAGTGCAAATTGATTTTTGCACCAACTTTGTTTGAGGAGCATTGGTCTTGTTATGCATTTGAGCCCAAGGACAAAATTTTGTATGTGTTAGATTCGATGCATGATAAATTCTCAACCAGAAAGAAGAACTTGGATGATGCAATGAAACGTCGTTTTGAGGAGCTGCTGGTATTGATGAATCCTGGTTTGACCAAAGAGAATGCATCAATAACACTTCTTCGCGTTGATGTTCCTAGGCAGCAAAACATTCATGATTGTGGCATCTATGTGCTGAAATACATGGAAATTTGGGATGGATCAATAAAATGGCAAGACAAAACCATGCCTGATTATCAACGCAAAGAAATCTTGAAGTTTCGGCAAAGCCTTATATGTGGATGGGTTCAACATCCTAAAAATGAGGTTAGAGAAGAGCTTTTGAAGGCTGCAGGACTATGGGGGAAATTATGCTGACTGACATTGACTATATCAAGTTAACACGTCTACTAAGAGATTTCGGTTATACATAGTTAATTTTTAAAAAAATGAAATACAGTTTTAATTCTTCATCTGGGGCACCCAAACTTAATATGAAAATGTAACACCTAGTTCACACTTTACTTGTATCTTGGGCATCCAAACTTTAATGCCCTGTGTACTCCAACACGAATATACTAGTTTCTATAAAGTTGTTACACATTTTTCTCAGCTGGTTTGTATGGG

Coding sequences of Glyma20g30095

Limit To All Plant Sequences

>Glyma20g30095.1   sequence type=CDS   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACGTAAGAGGAAGAATCGATCTAACAGTGCCACAGCTGGTAGCATCCCTGAAGCCGCTCCAAGTGAGGCAATTGAACCTTCTAGCAGTGCTATCAGGGGCTCTGAAAATAGGGTACCTGTGCCATTGGATACTTCCAACAGTCAAGAAGTAAAGAAGGCTGTGGACAAAAAATCCCTGTCTATGCTGAACAAGCTATATTACTTTTGTACTCGTCGACCAAAGGCACATGAGGAATTGAGTGTCTTGGTTAGCATGTTTGGCGTTTACTTAAACCGCAAGGATGGCTATACCATGAAACCAAAAGGATGGGTCAATGATATGGTGATTTTAGCTGCTGGAAAGATAATGATGGAAGAGGAGAAGGCAACAAATGGGGTTGTCACTCGTCATATGTTTAGCCCACAATTTGTGAATAAGGTGATATGCGATTTAAATCAATCTAATGAAGATAGCTACAAGCCTTGGTGTATTGAGGATGTATCTCTATTCATCTTGCCGAGTAAACTGGGTTATGATATTAATCAGTGCAAATTGATTTTTGCACCAACTTTGTTTGAGGAGCATTGGTCTTGTTATGCATTTGAGCCCAAGGACAAAATTTTGTATGTGTTAGATTCGATGCATGATAAATTCTCAACCAGAAAGAAGAACTTGGATGATGCAATGAAACGTCGTTTTGAGGAGCTGCTGGTATTGATGAATCCTGGTTTGACCAAAGAGAATGCATCAATAACACTTCTTCGCGTTGATGTTCCTAGGCAGCAAAACATTCATGATTGTGGCATCTATGTGCTGAAATACATGGAAATTTGGGATGGATCAATAAAATGGCAAGACAAAACCATGCCTGATTATCAACGCAAAGAAATCTTGAAGTTTCGGCAAAGCCTTATATGTGGATGGGTTCAACATCCTAAAAATGAGGTTAGAGAAGAGCTTTTGAAGGCTGCAGGACTATGGGGGAAATTATGCTGA

>Glyma20g30095.2   sequence type=CDS   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAACAAGCTATATTACTTTTGTACTCGTCGACCAAAGGCACATGAGGAATTGAGTGTCTTGGTTAGCATGTTTGGCGTTTACTTAAACCGCAAGGATGGCTATACCATGAAACCAAAAGGATGGGTCAATGATATGGTGATTTTAGCTGCTGGAAAGATAATGATGGAAGAGGAGAAGGCAACAAATGGGGTTGTCACTCGTCATATGTTTAGCCCACAATTTGTGAATAAGGTGATATGCGATTTAAATCAATCTAATGAAGATAGCTACAAGCCTTGGTGTATTGAGGATGTATCTCTATTCATCTTGCCGAGTAAACTGGGTTATGATATTAATCAGTGCAAATTGATTTTTGCACCAACTTTGTTTGAGGAGCATTGGTCTTGTTATGCATTTGAGCCCAAGGACAAAATTTTGTATGTGTTAGATTCGATGCATGATAAATTCTCAACCAGAAAGAAGAACTTGGATGATGCAATGAAACGTCGTTTTGAGGAGCTGCTGGTATTGATGAATCCTGGTTTGACCAAAGAGAATGCATCAATAACACTTCTTCGCGTTGATGTTCCTAGGCAGCAAAACATTCATGATTGTGGCATCTATGTGCTGAAATACATGGAAATTTGGGATGGATCAATAAAATGGCAAGACAAAACCATGCCTGATTATCAACGCAAAGAAATCTTGAAGTTTCGGCAAAGCCTTATATGTGGATGGGTTCAACATCCTAAAAATGAGGTTAGAGAAGAGCTTTTGAAGGCTGCAGGACTATGGGGGAAATTATGCTGA

>Glyma20g30095.3   sequence type=CDS   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGAACAAGCTATATTACTTTTGTACTCGTCGACCAAAGGCACATGAGGAATTGAGTGTCTTGGTTAGCATGTTTGGCGTTTACTTAAACCGCAAGGATGGCTATACCATGAAACCAAAAGGATGGGTCAATGATATGGTGATTTTAGCTGCTGGAAAGATAATGATGGAAGAGGAGAAGGCAACAAATGGGGTTGTCACTCGTCATATGTTTAGCCCACAATTTGTGAATAAGGTGATATGCGATTTAAATCAATCTAATGAAGATAGCTACAAGCCTTGGTGTATTGAGGATGTATCTCTATTCATCTTGCCGAGTAAACTGGGTTATGATATTAATCAGTGCAAATTGATTTTTGCACCAACTTTGTTTGAGGAGCATTGGTCTTGTTATGCATTTGAGCCCAAGGACAAAATTTTGTATGTGTTAGATTCGATGCATGATAAATTCTCAACCAGAAAGAAGAACTTGGATGATGCAATGAAACGTCGTTTTGAGGAGCTGCTGGTATTGATGAATCCTGGTTTGACCAAAGAGAATGCATCAATAACACTTCTTCGCGTTGATGTTCCTAGGCAGCAAAACATTCATGATTGTGGCATCTATGTGCTGAAATACATGGAAATTTGGGATGGATCAATAAAATGGCAAGACAAAACCATGCCTGATTATCAACGCAAAGAAATCTTGAAGTTTCGGCAAAGCCTTATATGTGGATGGGTTCAACATCCTAAAAATGAGGTTAGAGAAGAGCTTTTGAAGGCTGCAGGACTATGGGGGAAATTATGCTGA

Predicted protein sequences of Glyma20g30095

Limit To All Plant Sequences

>Glyma20g30095.1   sequence type=predicted peptide   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKRKNRSNSATAGSIPEAAPSEAIEPSSSAIRGSENRVPVPLDTSNSQEVKKAVDKKSLSMLNKLYYFCTRRPKAHEELSVLVSMFGVYLNRKDGYTMKPKGWVNDMVILAAGKIMMEEEKATNGVVTRHMFSPQFVNKVICDLNQSNEDSYKPWCIEDVSLFILPSKLGYDINQCKLIFAPTLFEEHWSCYAFEPKDKILYVLDSMHDKFSTRKKNLDDAMKRRFEELLVLMNPGLTKENASITLLRVDVPRQQNIHDCGIYVLKYMEIWDGSIKWQDKTMPDYQRKEILKFRQSLICGWVQHPKNEVREELLKAAGLWGKLC*

>Glyma20g30095.2   sequence type=predicted peptide   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNKLYYFCTRRPKAHEELSVLVSMFGVYLNRKDGYTMKPKGWVNDMVILAAGKIMMEEEKATNGVVTRHMFSPQFVNKVICDLNQSNEDSYKPWCIEDVSLFILPSKLGYDINQCKLIFAPTLFEEHWSCYAFEPKDKILYVLDSMHDKFSTRKKNLDDAMKRRFEELLVLMNPGLTKENASITLLRVDVPRQQNIHDCGIYVLKYMEIWDGSIKWQDKTMPDYQRKEILKFRQSLICGWVQHPKNEVREELLKAAGLWGKLC*

>Glyma20g30095.3   sequence type=predicted peptide   gene model=Glyma20g30095   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNKLYYFCTRRPKAHEELSVLVSMFGVYLNRKDGYTMKPKGWVNDMVILAAGKIMMEEEKATNGVVTRHMFSPQFVNKVICDLNQSNEDSYKPWCIEDVSLFILPSKLGYDINQCKLIFAPTLFEEHWSCYAFEPKDKILYVLDSMHDKFSTRKKNLDDAMKRRFEELLVLMNPGLTKENASITLLRVDVPRQQNIHDCGIYVLKYMEIWDGSIKWQDKTMPDYQRKEILKFRQSLICGWVQHPKNEVREELLKAAGLWGKLC*

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