Glyma20g29981 - SoyBase

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Report for Sequence Feature Glyma20g29981

Feature Type:	gene_model
Chromosome:	Gm20
Start:	38761554
stop:	38763396
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g29981

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02450	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L36e family protein \| chr5:533501-534394 FORWARD LENGTH=108	SoyBase	E_val: 2.00E-57	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3452	KOG	60S ribosomal protein L36	JGI		ISS
PTHR10114	Panther	60S RIBOSOMAL PROTEIN L36E	JGI		ISS
PF01158	PFAM	Ribosomal protein L36e	JGI		ISS
UniRef100_C6TK30	UniRef	Annotation by Michelle Graham. Best UniRef hit: 60S ribosomal protein L36 n=2 Tax=Glycine max RepID=C6TK30_SOYBN	SoyBase	E_val: 1.00E-69	ISS
UniRef100_C6TK30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L36 n=2 Tax=Glycine max RepID=C6TK30_SOYBN	SoyBase	E_val: 1.00E-69	ISS

Expression Patterns of Glyma20g29981

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g29981 not represented in the dataset	Glyma20g29981 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g29981

Paralog	Evidence	Comments
Glyma10g37840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g29981 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g160400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g29981

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g29981

Limit To All Plant Sequences

>Glyma20g29981.2   sequence type=transcript   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGATCAGCGACCCGACTTGAGTCTCAAATAAAAAGGGAAACAGCCTCTACAAAAACCCTAGTTGCTCTTTTCTCCCTCTCCGCATACACTCTGCTCGTAGGGTTTCTCCACCTAGAGGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGTCACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTCGGAACACACAAACGCGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTACTGTTTTCCAGATTCACTAGATGGACCTGTGTATTGATGGACGAGCTTTCATATTTTTGCTTTGGTTCAATTAGTTTACTTCAAGATTTTGTTTGAGAAATATGTTTTGCTTAACTGAGACATGATTTATGGAAGAAGCTAGATTGGATTATTTTCTGTTTTACTAGAAATGAGAGTTATAATCCTTTTTCAAGGGAACTTTGCATCTTATTAGTATCCTGAGGGTAATATTTCATTGAATCCCAAGGGTTAGTTATATTGCAAGCTGTGATGCTTTTGCATGCCTTATTGGTCAAAACCAAATGAGTTATATGGGATGTGTTTATTTTTGGTGTCGCCAGGAAGGGATGTGTTTATTTTGTAAGAGCTATGTTATTTGGACGTTTTATTTTTTTATAACAAACTTAAAAGAGAAAGAGAGGATTGATAGATGCGATAGAACTAGAAAAAGAATGTTATTGTGAAAAATGTAATTTGAATATATATTATTCTTTTGTGATAAGTAATGAA

>Glyma20g29981.3   sequence type=transcript   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGCATACACTCTGCTCGTAGGGTTTCTCCACCTAGAGGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGTCACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGGTAAGTTTTTTCAATGTTTCTTTTTCAAATGTGATTCAGTTTTTTTATTCTCATATTTGAACCTTTTTTAGATTGTAAGTGGTGGTGTTGGAATCAAAGTGTCATAAAATGCAGTGGCTGTCTTTTTAGAATAAGTGGGCGTCTTTCTAAGTTCTGAATAACAAAGAGTCTGTTTGTGTTTTGCAATTTTCTGTTCCTACTATTGTTTCTGTTGGGTTTCTGATCAATTTTAGTAGTTTTCTTATACGAGGGTAACTCCTATTTTTTATGACAATTACTTTTCCTAGACATTAGAAAAGATTGCAAACATAGAAGCCAAACTTTGAAAATTGTTACTTTTAGTTCTTACTATAGGTGTTCTTTGTGGGGAGAAGTAAGATTTTGAACCCATATTTGCGTCAATTTATTTTCCGAACTGATCTCAATCTTTGGTGATCTATTTTCCCTTTTATTAATTCATTCGCTCTTAATAAGGCTTGAAAGTGAATGCATTCACTCTCCCTTTTATTAATGCATTCATTCTATAGACATATCAGGCAGATTATGGTGTTGGAAGTGTATTTGATTGATTTTTCTTGAAAGTGTTTTAAATTATGTGGTCTATATGTGGTCCTACAATTATATGGATTCAAAACAGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTCGGAACACACAAACGCGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGGTTGTTCTATGTTCTTTTGTTCATATTATGCATACAATATAATTTATAAATCTGATTGGCAGTAGTTGCTATTACTTATGATGCTGTTTTCATTTTTGTGCAGGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTACTGTTTTCCAGATTCACTAGATGGACCTGTGTATTGATGGACGAGCTTTCATATTTTTGCTTTGGTTCAATTAGTTTACTTCAAGATTTTGTTTGAGAAATATGTTTTGCTTAACTGAGACATGATTTATGGAAGAAGCTAGATTGGATTATTTTCTGTTTTACTAGAAATGAGAGTTATAATCCTTTTTCAAGGGAACTTTGCATCTTATTAGTATCCTGAGGGTAATATTTCATTGAATCCCAAGGGTTAGTTATATTGCAAGCTGTGATGCTTTTGCATGCCTTATTGGTCAAAACCAAATGAGTTATATGGGATGTGTTTATTTTTGGTGTCGCCAGGAAGGGATGTGTTTATTTTGTAAGAGCTATGTTATTTGGACGTTTTATTTTTTTATAACAAACTTAAAAGAGAAAGAGAGGATTGATAGATGCGATAGAACTAGAAAAAGAATGTTATTGTGAAAAATGTAATTTGAATATATATTATTCTTTTGT

>Glyma20g29981.4   sequence type=transcript   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGCATACACTCTGCTCGTAGGGTTTCTCCACCTAGAGGGAAATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGTCACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGGTAAGTTTTTTCAATGTTTCTTTTTCAAATGTGATTCAGTTTTTTTATTCTCATATTTGAACCTTTTTTAGATTGTAAGTGGTGGTGTTGGAATCAAAGTGTCATAAAATGCAGTGGCTGTCTTTTTAGAATAAGTGGGCGTCTTTCTAAGTTCTGAATAACAAAGAGTCTGTTTGTGTTTTGCAATTTTCTGTTCCTACTATTGTTTCTGTTGGGTTTCTGATCAATTTTAGTAGTTTTCTTATACGAGGGTAACTCCTATTTTTTATGACAATTACTTTTCCTAGACATTAGAAAAGATTGCAAACATAGAAGCCAAACTTTGAAAATTGTTACTTTTAGTTCTTACTATAGGTGTTCTTTGTGGGGAGAAGTAAGATTTTGAACCCATATTTGCGTCAATTTATTTTCCGAACTGATCTCAATCTTTGGTGATCTATTTTCCCTTTTATTAATTCATTCGCTCTTAATAAGGCTTGAAAGTGAATGCATTCACTCTCCCTTTTATTAATGCATTCATTCTATAGACATATCAGGCAGATTATGGTGTTGGAAGTGTATTTGATTGATTTTTCTTGAAAGTGTTTTAAATTATGTGGTCTATATGTGGTCCTACAATTATATGGATTCAAAACAGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTCGGAACACACAAACGCGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGGGCTGGTGGTGCTGGAGACAAGAAGAAATAAGTCTTATTTACTGTTTTCCAGATTCACTAGATGGACCTGTGTATTGATGGACGAGCTTTCATATTTTTGCTTTGGTTCAATTAGTTTACTTCAAGATTTTGTTTGAGAAATATGTTTTGCTTAACTGAGACATGATTTATGGAAGAAGCTAGATTGGATTATTTTCTGTTTTACTAGAAATGAGAGTTATAATCCTTTTTCAAGGGAACTTTGCATCTTATTAGTATCCTGAGGGTAATATTTCATTGAATCCCAAGGGTTAGTTATATTGCAAGCTGTGATGCTTTTGCATGCCTTATTGGTCAAAACCAAATGAGTTATATGGGATGTGTTTATTTTTGGTGTCGCCAGGAAGGGATGTGTTTATTTTGTAAGAGCTATGTTATTTGGACGTTTTATTTTTTTATAACAAACTTAAAAGAGAAAGAGAGGATTGATAGATGCGATAGAACTAGAAAAAGAATGTTATTGTGAAAAATGTAATTTGAATATATATTATTCTTTTGT

Coding sequences of Glyma20g29981

Limit To All Plant Sequences

>Glyma20g29981.1   sequence type=CDS   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGTCACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTCGGAACACACAAACGCGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGGGCTGGTGGTGCTGGAGACAAGAAGAAATAA

>Glyma20g29981.2   sequence type=CDS   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCCAAACCGCCTAGTACGGGTCTGTTTGTTGGACTGAACAAGGGTCACGTCGTCACCAAGAAGGAATTGCCTCCACGCCCCTCAGATCGTAAGGGGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTCGGAACACACAAACGCGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGGGCTGGTGGTGCTGGAGACAAGAAGAAATAA

>Glyma20g29981.3   sequence type=CDS   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTCCTACAATTATATGGATTCAAAACAGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTCGGAACACACAAACGCGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGGTTGTTCTATGTTCTTTTGTTCATATTATGCATACAATATAATTTATAA

>Glyma20g29981.4   sequence type=CDS   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTCCTACAATTATATGGATTCAAAACAGAAAACAAGCAAGAGGGTGCACTTTGTGAGGAACCTCATAAGAGAGGTAGCCGGTTTTGCACCCTATGAAAAGCGTATAACTGAGTTGCTGAAGGTTGGGAAGGATAAGAGGGCACTGAAGGTTGCAAAGAGAAAGCTCGGAACACACAAACGCGCAAAGAAGAAGCGTGAGGAAATGTCCAGTGTTCTCAGGAAGATGAGGGCTGGTGGTGCTGGAGACAAGAAGAAATAA

Predicted protein sequences of Glyma20g29981

Limit To All Plant Sequences

>Glyma20g29981.1   sequence type=predicted peptide   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKPPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGAGDKKK*

>Glyma20g29981.2   sequence type=predicted peptide   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKPPSTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGAGDKKK*

>Glyma20g29981.3   sequence type=predicted peptide   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWSYNYMDSKQKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRLFYVLLFILCIQYNL*

>Glyma20g29981.4   sequence type=predicted peptide   gene model=Glyma20g29981   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWSYNYMDSKQKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGAGDKKK*

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