Glyma20g29930 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma20g29930): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma20g29930): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma20g29930

Feature Type:	gene_model
Chromosome:	Gm20
Start:	38719786
stop:	38730101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g29930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23870	AT	Annotation by Michelle Graham. TAIR10: Pectinacetylesterase family protein \| chr5:8045958-8049999 REVERSE LENGTH=436	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
KOG4287	KOG	Pectin acetylesterase and similar proteins	JGI		ISS
PTHR21562	Panther	NOTUM-RELATED	JGI		ISS
PTHR21562:SF1	Panther	PECTIN ACETYLESTERASE	JGI		ISS
PF03283	PFAM	Pectinacetylesterase	JGI		ISS
UniRef100_G7IAM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Notum-like protein n=1 Tax=Medicago truncatula RepID=G7IAM1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NGU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGU7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g29930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g29930 not represented in the dataset	Glyma20g29930 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g29930

Paralog	Evidence	Comments
Glyma10g37890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g29930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g159900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g29930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g29930

Limit To All Plant Sequences

>Glyma20g29930.4   sequence type=transcript   gene model=Glyma20g29930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCATTTCCTTCCTTCTCATCCATTTTCCCTCCTTAATTCCCCTTCACGCCTTCACGTCCACCTTGTCCCAATCTCCAACTCCTTCCCCCCTCCTCTCTTTTCTTTTCTATCTCCAACACCAACACTGACCAAAACGACGCCGTTTCGTAAGCTTCCATTAACCGCAATTCGGAACTCCACACTCACATATTCTCCAGTTCCATTCCTTCCACGGTTTCCTTTTTCCCCTTTCTAGCTCTCATATTCCGCTTGCGCCAAACTATTTTTATAACGCTGATTGCGACCCGAATTAATCTTTATCCATTGCGTTGAAGCAATTCATGTGGCGTCCACTTCACTTACGTGGATTTCCAAACACTATACATGAGGAAACTCCGTTAATCTGAATCCATTGTTGATTATTCATTCCTCCAAGTCCAGACAAAAAGCAAAACAACGCGCTTATTTCTAGATCTCAGCTTTCTCGATTCTCCTTTTCCCAAGCGACTCCGAATCCCCGAAAAAAAACAACAATAACACACGATTCCTTTCTTCTCTACGAAGATGATCAAGATGAATCTCGCGTTCGCATTCTTGTGTCTATTCACGGTGGAGCCATGGCGCGTTTGCTCGCAACAACAACAACAGAGGCTTCTCGTGAACATGACGCTCGTTCCAAGCGCTCGTGCTAGTGGCGCTCTTTGTTTGGACGGAAGTTTACCGGCGTATCACTTGCACAGAGGATTTGGAGCTGGTAAAGACAACTGGCTTCTACAATTTGAGGGAGGTGGATGGTGTAATGACTTGAAATCATGCTTGGATAGAGCCAAAACTCGGAGGGGTTCAACACGTTATATGACCAAGTGGGAGGTGTTCTCCGGTATTTTAAGCAATAATGCCACCCTTAATGCAGATTTTTACAATTGGAACCGTGTGAAGCTGAGATATTGTGATGGGGCTTCATTTACTGGAGATGCTGTGTTCACTAACAAGACAACAACTCTTCATTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTCGCGACCTTTTACCACTGGGTTTGGGAAAGGCACGGAAGGCTTTGCTTTCAGGTTGCTCAGCAGGAGGTTTAGCGACCTTTCACCATTGTGACAACTTCGCCAAGTATTTGCCAACGAATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTTGACGAAAGAGATATCAGTTTGAATCATACTATGAGGTATAATTTCAAAAGTCTAGTTCAATTGCAGGGGATAGAGAAGAACCTGAATGGAAATTGTACCAGAGCACTGTACTTTCCTGACTTGTGCTTCTTTCCACAATATGCGTTGAGATACATATCAACGCCATATTTTATTTTGAACTCTGCCTACGATGTATTCCAGTTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAACAATGCAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACACTGCAAGGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGAACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAGGAAATAGATTGTGCATATCCTTGTGATGCAACTTGTCATAATCTTATACCGTAAGCTCAGGTAATGCCTTGTATAAAATTATGTACAAATTCTCTTGACATCTTTATGACTTTTAAGCTCCATTATCTGACTCAATTTGAAGTATTGCAGGTTAGTTGGAAGATTAAACTGAACATTTTTTCCTCAAGCTTCTCTATTTCTCAGAGAAGTTATGATAGTTCTCTGAAAAAGAATTAAGAGACATTTTTCGTAGACAGCCAGTCAGCCATACAAGTACAGTGAATGCTAGACAGATAGAAAATTCTTTGATAGGAACAAGAAAGGGATAAAGAAACCAAATGAAAAAAAAATGTGGTTTGAATGATGTTAATTATTGTTTATTCATTACAAAATATTTTATTACTTAATAAAATCAATTGGTTTTTCTTATTTTCTTTCTTATGTCTAAAAGCTCATCAACTGTATGCATCATGTCTTGAACCTAAATTCAATGAATATGCACTTCAAGTAAATACATATTATCAGTCCCCAATCCCTCAACCCTTTCACTCTTATTTTCATCCGACTACTGGCACACCATAATTCAATAACTTCAATGAATATGCACTTCAAGTAAATCTATGAACATCGAGGAGTTTTCTACCAACTAGTTATGGGTTAGTTACAAGCAAATTTGACCCTACATTCAATGAAATGTTCATTGTTTTATTTGTACTGTTAAGCATCACGTTCCAAATGACCTAAATTCAACCTACGATGCTCATTAGGATTTGATAATAGGGCAGGTCAAGGGGCAAGTTTGCCTA

Coding sequences of Glyma20g29930

Limit To All Plant Sequences

>Glyma20g29930.3   sequence type=CDS   gene model=Glyma20g29930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAAGATGAATCTCGCGTTCGCATTCTTGTGTCTATTCACGGTGGAGCCATGGCGCGTTTGCTCGCAACAACAACAACAGAGGCTTCTCGTGAACATGACGCTCGTTCCAAGCGCTCGTGCTAGTGGCGCTCTTTGTTTGGACGGAAGTTTACCGGCGTATCACTTGCACAGAGGATTTGGAGCTGGTAAAGACAACTGGCTTCTACAATTTGAGGGAGGTGGATGGTGTAATGACTTGAAATCATGCTTGGATAGAGCCAAAACTCGGAGGGGTTCAACACGTTATATGACCAAGTGGGAGGTGTTCTCCGGTATTTTAAGCAATAATGCCACCCTTAATGCAGATTTTTACAATTGGAACCGTGTGAAGCTGAGATATTGTGATGGGGCTTCATTTACTGGAGATGCTGTGTTCACTAACAAGACAACAACTCTTCATTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTCGCGACCTTTTACCACTGGGTTTGGGAAAGGCACGGAAGGCTTTGCTTTCAGGTTGCTCAGCAGGAGGTTTAGCGACCTTTCACCATTGTGACAACTTCGCCAAGTATTTGCCAACGAATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTTGACGAAAGAGATATCAGTTTGAATCATACTATGAGGTATAATTTCAAAAGTCTAGTTCAATTGCAGGGGATAGAGAAGAACCTGAATGGAAATTGTACCAGAGCACTGTACTTTCCTGACTTGTGCTTCTTTCCACAATATGCGTTGAGATACATATCAACGCCATATTTTATTTTGAACTCTGCCTACGATGTATTCCAGTTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAACAATGCAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACACTGCAAGGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGAACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAGGAAATAGATTGTGCATATCCTTGTGATGCAACTTGTCATAATCTTATACCGTAA

>Glyma20g29930.4   sequence type=CDS   gene model=Glyma20g29930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAAGATGAATCTCGCGTTCGCATTCTTGTGTCTATTCACGGTGGAGCCATGGCGCGTTTGCTCGCAACAACAACAACAGAGGCTTCTCGTGAACATGACGCTCGTTCCAAGCGCTCGTGCTAGTGGCGCTCTTTGTTTGGACGGAAGTTTACCGGCGTATCACTTGCACAGAGGATTTGGAGCTGGTAAAGACAACTGGCTTCTACAATTTGAGGGAGGTGGATGGTGTAATGACTTGAAATCATGCTTGGATAGAGCCAAAACTCGGAGGGGTTCAACACGTTATATGACCAAGTGGGAGGTGTTCTCCGGTATTTTAAGCAATAATGCCACCCTTAATGCAGATTTTTACAATTGGAACCGTGTGAAGCTGAGATATTGTGATGGGGCTTCATTTACTGGAGATGCTGTGTTCACTAACAAGACAACAACTCTTCATTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTCGCGACCTTTTACCACTGGGTTTGGGAAAGGCACGGAAGGCTTTGCTTTCAGGTTGCTCAGCAGGAGGTTTAGCGACCTTTCACCATTGTGACAACTTCGCCAAGTATTTGCCAACGAATGCTAGTGTTAAATGCTTGAGTGATGCCGGTTTTTTTCTTGACGAAAGAGATATCAGTTTGAATCATACTATGAGGTATAATTTCAAAAGTCTAGTTCAATTGCAGGGGATAGAGAAGAACCTGAATGGAAATTGTACCAGAGCACTGTACTTTCCTGACTTGTGCTTCTTTCCACAATATGCGTTGAGATACATATCAACGCCATATTTTATTTTGAACTCTGCCTACGATGTATTCCAGTTCAGTCATATTTTGGTGCCACCCTCTGCTGATATGCACGGACACTGGAAACAATGCAAGGCGAACCTGGCGGAGTGTACAGCAGACCAAATTGATACACTGCAAGGTTTTAGGCTTGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAGAGTGAACTACAAGAAACATGGTTTGGGGATGATTCTCCAAGAATAAACAATAAGACTATTGCAGAAGCGATTGGTGATTGGTATTTTAGTAGAAACATAAGCAAGGAAATAGATTGTGCATATCCTTGTGATGCAACTTGTCATAATCTTATACCGTAA

Predicted protein sequences of Glyma20g29930

Limit To All Plant Sequences

>Glyma20g29930.3   sequence type=predicted peptide   gene model=Glyma20g29930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKMNLAFAFLCLFTVEPWRVCSQQQQQRLLVNMTLVPSARASGALCLDGSLPAYHLHRGFGAGKDNWLLQFEGGGWCNDLKSCLDRAKTRRGSTRYMTKWEVFSGILSNNATLNADFYNWNRVKLRYCDGASFTGDAVFTNKTTTLHFKGQKIWEAIIRDLLPLGLGKARKALLSGCSAGGLATFHHCDNFAKYLPTNASVKCLSDAGFFLDERDISLNHTMRYNFKSLVQLQGIEKNLNGNCTRALYFPDLCFFPQYALRYISTPYFILNSAYDVFQFSHILVPPSADMHGHWKQCKANLAECTADQIDTLQGFRLDMLGALRPFYMNSRRGGMFINSCFAHCQSELQETWFGDDSPRINNKTIAEAIGDWYFSRNISKEIDCAYPCDATCHNLIP*

>Glyma20g29930.4   sequence type=predicted peptide   gene model=Glyma20g29930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKMNLAFAFLCLFTVEPWRVCSQQQQQRLLVNMTLVPSARASGALCLDGSLPAYHLHRGFGAGKDNWLLQFEGGGWCNDLKSCLDRAKTRRGSTRYMTKWEVFSGILSNNATLNADFYNWNRVKLRYCDGASFTGDAVFTNKTTTLHFKGQKIWEAIIRDLLPLGLGKARKALLSGCSAGGLATFHHCDNFAKYLPTNASVKCLSDAGFFLDERDISLNHTMRYNFKSLVQLQGIEKNLNGNCTRALYFPDLCFFPQYALRYISTPYFILNSAYDVFQFSHILVPPSADMHGHWKQCKANLAECTADQIDTLQGFRLDMLGALRPFYMNSRRGGMFINSCFAHCQSELQETWFGDDSPRINNKTIAEAIGDWYFSRNISKEIDCAYPCDATCHNLIP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain