SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52270 | AT | Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein | chr5:21221643-21222600 REVERSE LENGTH=214 | SoyBase | E_val: 3.00E-33 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0859 | KOG | Synaptobrevin/VAMP-like protein | JGI | ISS | |
| PTHR21136 | Panther | SNARE PROTEINS | JGI | ISS | |
| PTHR21136:SF88 | Panther | JGI | ISS | ||
| UniRef100_Q9LTJ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vesicle transport protein SEC22 n=1 Tax=Arabidopsis thaliana RepID=Q9LTJ4_ARATH | SoyBase | E_val: 2.00E-30 | ISS |
| UniRef100_UPI000233DA3C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DA3C related cluster n=1 Tax=unknown RepID=UPI000233DA3C | SoyBase | E_val: 1.00E-109 | ISS |
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Glyma20g29721 not represented in the dataset |
Glyma20g29721 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g38101 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g158000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g29721.1 sequence type=CDS gene model=Glyma20g29721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTTGCCTTTTTTGGTTTTTTATTCCTCTCTAGTTTCTTAAGTTGCATTGCAATAAATTTTGATTATGATTATACTCTTTTGGTATTAAGCTACTTGGTCGAGAACGGAGTTGTTTTCATTGTGTTGTGTGAGTCCACGTACCCAAGAAAACTGGCCTTCCATTACCTACAAGATATACAAAAGGAGTTTGAGAAGTTTGATAAAACCCTCATAGGCAAAATCACAAGGCCATACAGCTTTGTCAAATTTGATGGTATAATCGCAAACATTAGCAGACAATACATTGATACAAGAACTCAGGCCAACCTATCAAAACTTAACGCTAACCGGAAACAAGATTTAGATATTGCCACTGAAGACATTTACAAAATTTTAGAAAGGAAGAGAAATTCAGAAACAATGAGAAGATTACCGGTTACTCCTCAACCTGAATCCACAATATGGTGCTCCCCACAACTTGAGGTGATTGCATTGAAATGGACACCTATTATGATCATTGTCATTACTTCGATGGCTCTTTTATGGGCTAGCTTAGCCCTCACAGATGACTTTATTGTTTGA
>Glyma20g29721.1 sequence type=predicted peptide gene model=Glyma20g29721 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALAFFGFLFLSSFLSCIAINFDYDYTLLVLSYLVENGVVFIVLCESTYPRKLAFHYLQDIQKEFEKFDKTLIGKITRPYSFVKFDGIIANISRQYIDTRTQANLSKLNANRKQDLDIATEDIYKILERKRNSETMRRLPVTPQPESTIWCSPQLEVIALKWTPIMIIVITSMALLWASLALTDDFIV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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