SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52200 | AT | Annotation by Michelle Graham. TAIR10: phosphoprotein phosphatase inhibitors | chr5:21202818-21204719 REVERSE LENGTH=191 | SoyBase | E_val: 4.00E-24 | ISS |
| GO:0009966 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of signal transduction | SoyBase | N/A | ISS |
| GO:0043666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of phosphoprotein phosphatase activity | SoyBase | N/A | ISS |
| GO:0080163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004864 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein phosphatase inhibitor activity | SoyBase | N/A | ISS |
| PTHR12398 | Panther | PROTEIN PHOSPHATASE INHIBITOR | JGI | ISS | |
| PTHR12398:SF5 | Panther | gb def: Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19 (AT5g52200/F17P | JGI | ISS | |
| PF04979 | PFAM | Protein phosphatase inhibitor 2 (IPP-2) | JGI | ISS | |
| UniRef100_B6SQN8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase inhibitor 2 containing protein n=2 Tax=Zea mays RepID=B6SQN8_MAIZE | SoyBase | E_val: 3.00E-27 | ISS |
| UniRef100_I1NGS0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGS0_SOYBN | SoyBase | E_val: 2.00E-110 | ISS |
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Glyma20g29650 not represented in the dataset |
Glyma20g29650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g38190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g157200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g29650.3 sequence type=transcript gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTCTCCTACCTAGTTAAACACCGCAATTGGATTTGAAGTTGACCAAGCCACTTGAGGATAGATTTGCATACTTTTGGTGTTTGAAGAGCTATTCCATCTGCCAAAATGAAGGGACGTGTAAGATGGAATGAGGATAATATTGGAGAAATTGAAGCAAACAAGCCCGTGAGGCAAAAAATCACTGAACCTAAGACCCCGTATCATCCTATGATTGATGATGACAGTTCTCCGTCCCCTGTACAAGGAGATTTTGACGAATATAATGGTGATAAAGATCACTCAGCAAATGCTGAACAAACTGGTTTTAAGAATGGGGCATGTTGTAACAGAAAAGGAACTAGACAATCTGATGGCTGGACATCATCTGAGGATGAGGCAGAAGAAACTGAAGAGGATGAGGAAGATAGAAGTTTGAGTTTTAAAGAGCACAGAAAGGCCCACTATGATGAATTCCTGAAAGTCAAAGAGCTGCAACAAAAGGCTTCTCTGGAGGATGGAAGTGACGAGGATGATAATGCTGAGCTTACCATCGAGGAGAAGAAAAATGACTCATCTTCTCCAATAAGTGCTACGTGAAGGAGAAAAAGTGTCTTCCAATCAATGCCTACAACCAAATGCTTCCTACATGATCAAATAAAACCCACTCTAGTTTCATCAGCCTTTGTGTAAGGCGGGGATGGAAATAACAGAAGGATTTATTGTATTTATTGTGTCTTTTGTGTGTAAAATATCTTTTCTTTTTTGTTTTTCACCGGTATGTTCATCTGAACTTGCATGATTCTTGTAGACTCTGTAATATGCCAAATTAGATTTCTTTTGGCAAGCGACAAACATTCTGGTGATAAGATTATAAGAGTGATGATTACGAAGATGTAACACTCCAAACGTGACATTTAAGTATTAAGGCTGCATGATTGGATAAATTATATTGATTCTTAAATCAACAATATATATATATTTCTCTTGGAGGAATTGTCTGTTTCTGAAGCTAC >Glyma20g29650.4 sequence type=transcript gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTCTCTCGTGTTTTTTCCACTTACATTTTAGATTTTCAATTTCCCGAAAAAAAACGGAACACCAGTTTGTCTCTCATTGATTTTAGACGTTGCCTGGGGTACACTTCCATGCTTTCAATTTGACTATCAAAATTATCGAAGTTGACCAAGCCACTTGAGGATAGATTTGCATACTTTTGGTGTTTGAAGAGCTATTCCATCTGCCAAAATGAAGGGACGTGTAAGATGGAATGAGGATAATATTGGAGAAATTGAAGCAAACAAGCCCGTGAGGCAAAAAATCACTGAACCTAAGACCCCGTATCATCCTATGATTGATGATGACAGTTCTCCGTCCCCTGTACAAGGAGATTTTGACGAATATAATGGTGATAAAGATCACTCAGCAAATGCTGAACAAACTGGTTTTAAGAATGGGGCATGTTGTAACAGAAAAGGAACTAGACAATCTGATGGCTGGACATCATCTGAGGATGAGGCAGAAGAAACTGAAGAGGATGAGGAAGATAGAAGTTTGAGTTTTAAAGAGCACAGAAAGGCCCACTATGATGAATTCCTGAAAGTCAAAGAGCTGCAACAAAAGGCTTCTCTGGAGGATGGAAGTGACGAGGATGATAATGCTGAGCTTACCATCGAGGAGAAGAAAAATGACTCATCTTCTCCAATAAGTGCTACGTGAAGGAGAAAAAGTGTCTTCCAATCAATGCCTACAACCAAATGCTTCCTACATGATCAAATAAAACCCACTCTAGTTTCATCAGCCTTTGTGTAAGGCGGGGATGGAAATAACAGAAGGATTTATTGTATTTATTGTGTCTTTTGTGTGTAAAATATCTTTTCTTTTTTGTTTTTCACCGGTATGTTCATCTGAACTTGCATGATTCTTGTAGACTCTGTAATATGCCAAATTAGATTTCTTTTGGCAAGCGACAAACATTCTGGTGATAAGATTATAAGAGTGATGATTACGAAGATGTAACACTCCAAACGTGACATTTAAGTATTAAGGCTGCATGATTGGATAAATTATATTGATTCTTAAATCAACAATATATATATATTTCTCTTGGAGGAATTGTCTGTTTCTGAAGCTAC
>Glyma20g29650.2 sequence type=CDS gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGACGTGTAAGATGGAATGAGGATAATATTGGAGAAATTGAAGCAAACAAGCCCGTGAGGCAAAAAATCACTGAACCTAAGACCCCGTATCATCCTATGATTGATGATGACAGTTCTCCGTCCCCTGTACAAGGAGATTTTGACGAATATAATGGTGATAAAGATCACTCAGCAAATGCTGAACAAACTGGTTTTAAGAATGGGGCATGTTGTAACAGAAAAGGAACTAGACAATCTGATGGCTGGACATCATCTGAGGATGAGGCAGAAGAAACTGAAGAGGATGAGGAAGATAGAAGTTTGAGTTTTAAAGAGCACAGAAAGGCCCACTATGATGAATTCCTGAAAGTCAAAGAGCTGCAACAAAAGGCTTCTCTGGAGGATGGAAGTGACGAGGATGATAATGCTGAGCTTACCATCGAGGAGAAGAAAAATGACTCATCTTCTCCAATAAGTGCTACGTGA >Glyma20g29650.3 sequence type=CDS gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGACGTGTAAGATGGAATGAGGATAATATTGGAGAAATTGAAGCAAACAAGCCCGTGAGGCAAAAAATCACTGAACCTAAGACCCCGTATCATCCTATGATTGATGATGACAGTTCTCCGTCCCCTGTACAAGGAGATTTTGACGAATATAATGGTGATAAAGATCACTCAGCAAATGCTGAACAAACTGGTTTTAAGAATGGGGCATGTTGTAACAGAAAAGGAACTAGACAATCTGATGGCTGGACATCATCTGAGGATGAGGCAGAAGAAACTGAAGAGGATGAGGAAGATAGAAGTTTGAGTTTTAAAGAGCACAGAAAGGCCCACTATGATGAATTCCTGAAAGTCAAAGAGCTGCAACAAAAGGCTTCTCTGGAGGATGGAAGTGACGAGGATGATAATGCTGAGCTTACCATCGAGGAGAAGAAAAATGACTCATCTTCTCCAATAAGTGCTACGTGA >Glyma20g29650.4 sequence type=CDS gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGGACGTGTAAGATGGAATGAGGATAATATTGGAGAAATTGAAGCAAACAAGCCCGTGAGGCAAAAAATCACTGAACCTAAGACCCCGTATCATCCTATGATTGATGATGACAGTTCTCCGTCCCCTGTACAAGGAGATTTTGACGAATATAATGGTGATAAAGATCACTCAGCAAATGCTGAACAAACTGGTTTTAAGAATGGGGCATGTTGTAACAGAAAAGGAACTAGACAATCTGATGGCTGGACATCATCTGAGGATGAGGCAGAAGAAACTGAAGAGGATGAGGAAGATAGAAGTTTGAGTTTTAAAGAGCACAGAAAGGCCCACTATGATGAATTCCTGAAAGTCAAAGAGCTGCAACAAAAGGCTTCTCTGGAGGATGGAAGTGACGAGGATGATAATGCTGAGCTTACCATCGAGGAGAAGAAAAATGACTCATCTTCTCCAATAAGTGCTACGTGA
>Glyma20g29650.2 sequence type=predicted peptide gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGRVRWNEDNIGEIEANKPVRQKITEPKTPYHPMIDDDSSPSPVQGDFDEYNGDKDHSANAEQTGFKNGACCNRKGTRQSDGWTSSEDEAEETEEDEEDRSLSFKEHRKAHYDEFLKVKELQQKASLEDGSDEDDNAELTIEEKKNDSSSPISAT* >Glyma20g29650.3 sequence type=predicted peptide gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGRVRWNEDNIGEIEANKPVRQKITEPKTPYHPMIDDDSSPSPVQGDFDEYNGDKDHSANAEQTGFKNGACCNRKGTRQSDGWTSSEDEAEETEEDEEDRSLSFKEHRKAHYDEFLKVKELQQKASLEDGSDEDDNAELTIEEKKNDSSSPISAT* >Glyma20g29650.4 sequence type=predicted peptide gene model=Glyma20g29650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGRVRWNEDNIGEIEANKPVRQKITEPKTPYHPMIDDDSSPSPVQGDFDEYNGDKDHSANAEQTGFKNGACCNRKGTRQSDGWTSSEDEAEETEEDEEDRSLSFKEHRKAHYDEFLKVKELQQKASLEDGSDEDDNAELTIEEKKNDSSSPISAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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