Glyma20g29600 - SoyBase

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Report for Sequence Feature Glyma20g29600

Feature Type:	gene_model
Chromosome:	Gm20
Start:	38475837
stop:	38480020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g29600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07280	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat transmembrane protein kinase \| chr5:2285088-2288666 FORWARD LENGTH=1192	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010234	GO-bp	Annotation by Michelle Graham. GO Biological Process: tapetal cell fate specification	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0019199	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane receptor protein kinase activity	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF121	Panther	EMS1 (EXCESS MICROSPOROCYTES1), KINASE	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_B9R9E2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor protein kinase exs, putative n=1 Tax=Ricinus communis RepID=B9R9E2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C92E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C92E related cluster n=1 Tax=unknown RepID=UPI000233C92E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g29600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g29600

Paralog	Evidence	Comments
Glyma10g38255	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g29600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g156700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g29600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g29600

Limit To All Plant Sequences

>Glyma20g29600.2   sequence type=CDS   gene model=Glyma20g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTACCTTTCAACCTCGTACTCTCATACCTCGTCGTGTTCCACATTTTTTTGTGCACCACTGCAGACCAAAGCAACGACAGGCTTTCCCTCCTTTCCTTCAAAGACGGTCTCCAAAACCCTCACGTGCTAACCTCATGGCACCCTTCAACGCTGCACTGCGACTGGCTCGGCGTCACGTGCCAACTCGGCCGAGTCACCTCGCTCTCTCTTCCCAGCCGCAACCTCAGAGGAACACTCTCCCCGTCGCTGTTTTCTCTGTCTTCACTCTCTCTCCTCAACCTCTGTGACAACCAGCTCTCCGGCGAGATCCCCAGCGAGCTTGGCGGGCTGCTTCAGCTCCAAACTCTCAGACTCGGCTCCAACTCGCTCGCCGGAAAAATCCCACCGGAGGTGGGACTCCTGACAAAACTCCGCACCCTCGACCTCTCCGGCAACTCCCTCGCCGGAGAAGTGCCGGAGAGTGTTGGAAACTTGACAAAGCTTGAGTTTCTCGACCTGAGTAACAATTTTTTCTCCGGTTCTCTTCCGGTGAGTCTGTTCACCGGAGCGAAGTCTTTGATTTCCGCTGATATCTCGAACAACTCGTTTTCCGGCGTAATCCCTCCGGAAATCGGGAACTGGAGGAACATCAGTGCCCTTTACGTGGGGATTAACAAGTTGTCTGGGACTTTGCCTAAGGAAATTGGGTTACTTTCAAAACTTGAAATTTTGTACTCCCCTTCCTGTTCCATCGAAGGTCCTTTGCCTGAGGAAATGGCGAAGCTGAAATCGTTGACTAAACTTGACCTTTCTTACAACCCCTTGAGGTGTTCGATTCCCAAGTTCATTGGGGAGTTGGAGAGTTTGAAAATTTTGGACCTTGTCTTCGCCCAGCTTAATGGGTCGGTGCCGGCTGAGCTTGGGAATTGTAAGAATTTAAGGTCTGTGATGCTCTCTTTCAATTCACTTTCTGGGTCACTGCCTGAGGAGCTTTCTGAGCTTCCTATGTTAGCCTTTTCTGCTGAGAAGAATCAGCTTCATGGACATTTGCCTTCTTGGCTTGGAAAGTGGAGCAATGTTGATTCTCTTTTGCTCTCTGCTAACCGTTTCTCTGGGATGATTCCACCTGAGCTTGGGAATTGTTCTGCGTTGGAGCACCTCAGTTTGAGCAGTAATTTGTTGACAGGTCCCATTCCTGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAACTTTCTCTCTGGTGCTATTGATAATGTGTTTGTTAAGTGTAAGAACCTTACTCAGTTGGTTTTGCTGAATAACCGGATTGTTGGTTCTATACCTGAGTATCTTTCTGAGCTTCCCTTGATGGTGCTGGACCTTGATTCCAACAATTTTAGTGGGAAGATGCCTTCTGGTCTGTGGAATTCATCAACCCTGATGGAATTCTCTGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAGTGCGGTTATGCTGGAGAGGCTTGTTCTTAGCAACAATCGACTGACAGGTACTATACCTAAGGAAATTGGGAGTCTCAAAAGTCTTTCAGTTCTTAATTTGAATGGGAATATGCTTGAAGGGAGTATTCCAACTGAGCTTGGTGATTGTACTTCCCTTACTACTATGGACCTTGGAAACAATAAGCTGAACGGGTCTATTCCCGAGAAACTGGTGGAACTAAGCCAATTGCAGTGCCTGGTTCTTTCTCACAATAAACTGTCTGGGTCTATTCCTGCCAAGAAATCTTCGTATTTTCGACAACTTAGCATCCCTGATTTGAGCTTTGTTCAGCACCTTGGTGTGTTTGATCTTTCTCACAACAGATTGTCTGGCCCCATACCTGATGAACTTGGGAGCTGTGTGGTGGTTGTGGATCTCTTGGTCAGCAACAACATGCTTTCTGGGAGCATTCCTAGATCACTCTCGCGCTTGACGAATCTTACGACCTTGGATTTGTCTGGCAACTTGTTGTCAGGTTCCATTCCCCAAGAGCTTGGAGGTGTCCTCAAACTCCAGGGTTTGTATCTGGGACAGAATCAGCTATCAGGTACCATCCCTGAAAGCTTTGGAAAGTTGAGTAGTTTGGTGAAGCTGAATTTGACAGGAAATAAGTTGTCTGGTCCAATTCCGGTTAGTTTTCAGAACATGAAGGGGCTGACTCACTTGGACTTGAGCTCTAATGAGCTCAGTGGCGAGCTTCCATCCTCTCTTTCAGGAGTGCAAAGTCTTGTTGGGATTTATGTGCAGAATAACAGGATTTCTGGCCAAGTAGGGGATCTCTTCTCAAACTCCATGACTTGGAGGATTGAGACAGTGAATTTAAGTAACAACTGTTTCAATGGGAACTTGCCGCAGTCTTTGGGAAATCTTTCTTACTTGACAAATTTGGATCTTCATGGAAATATGTTAACTGGAGAGATTCCTTTAGACCTTGGGGATCTAATGCAACTGGAATACTTTGATGTTTCAGGTAACCAACTATCTGGAAGGATTCCAGACAAGTTATGCAGCCTAGTTAATCTGAATTACCTAGATTTGTCTCGAAATAGGTTGGAAGGGCCAATACCGAGAAATGGTATCTGCCAGAACCTATCCAGAGTTAGACTTGCAGGGAACAAAAACCTTTGTGGCCAGATGTTGGGTATAAATTGTCAGGATAAAAGCATTGGCAGATCAGTATTGTATAATGCATGGCGACTTGCTGTAATTACGGTTACAATCATATTGCTAACTCTAAGCTTTGCTTTTCTTCTGCATAAATGGATTAGCAGGAGGCAAAATGATCCTGAGGAGCTTAAGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTTTATTTCTTGAGCAGTAGCAGATCAAAAGAACCTTTGAGTATCAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACTTTGGTGGATATCCTTGAAGCAACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTTTACCTAATGGAAAAACAGTTGCAGTGAAGAAGCTTAGTGAGGCTAAAACGCAGGGTCATCGCGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTTGTTGCATTGCTCGGATATTGCTCAATCGGCGAGGAGAAACTCCTTGTTTACGAATACATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAGGACTGGGGCCCTTGAAATCCTTGACTGGAACAAACGTTACAAAATCGCAACCGGTGCAGCTCGAGGATTAGCTTTCCTTCATCATGGCTTCACACCCCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTGCTCAGTGGAGATTTTGAGCCAAAAGTTGCAGACTTTGGACTGGCAAGACTTATCAGTGCCTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGCTACATTCCACCAGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGAGATGTCTACAGTTTTGGTGTCATTTTGCTTGAACTGGTGACCGGAAAAGAGCCGACGGGACCGGATTTTAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTTGTCAGAAGATCAAGAAGGGGCAGGCTGCTGATGTTCTTGATCCAACAGTTCTTGATGCTGACTCGAAACAGATGATGCTTCAAATGCTGCAAATTGCTGGTGTGTGCATATCTGATAATCCTGCAAACAGGCCTACCATGCTTCAAGTGCACAAATTCTTGAAGGGGATGAAGGGAGAGTAG

Predicted protein sequences of Glyma20g29600

Limit To All Plant Sequences

>Glyma20g29600.2   sequence type=predicted peptide   gene model=Glyma20g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPFNLVLSYLVVFHIFLCTTADQSNDRLSLLSFKDGLQNPHVLTSWHPSTLHCDWLGVTCQLGRVTSLSLPSRNLRGTLSPSLFSLSSLSLLNLCDNQLSGEIPSELGGLLQLQTLRLGSNSLAGKIPPEVGLLTKLRTLDLSGNSLAGEVPESVGNLTKLEFLDLSNNFFSGSLPVSLFTGAKSLISADISNNSFSGVIPPEIGNWRNISALYVGINKLSGTLPKEIGLLSKLEILYSPSCSIEGPLPEEMAKLKSLTKLDLSYNPLRCSIPKFIGELESLKILDLVFAQLNGSVPAELGNCKNLRSVMLSFNSLSGSLPEELSELPMLAFSAEKNQLHGHLPSWLGKWSNVDSLLLSANRFSGMIPPELGNCSALEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGAIDNVFVKCKNLTQLVLLNNRIVGSIPEYLSELPLMVLDLDSNNFSGKMPSGLWNSSTLMEFSAANNRLEGSLPVEIGSAVMLERLVLSNNRLTGTIPKEIGSLKSLSVLNLNGNMLEGSIPTELGDCTSLTTMDLGNNKLNGSIPEKLVELSQLQCLVLSHNKLSGSIPAKKSSYFRQLSIPDLSFVQHLGVFDLSHNRLSGPIPDELGSCVVVVDLLVSNNMLSGSIPRSLSRLTNLTTLDLSGNLLSGSIPQELGGVLKLQGLYLGQNQLSGTIPESFGKLSSLVKLNLTGNKLSGPIPVSFQNMKGLTHLDLSSNELSGELPSSLSGVQSLVGIYVQNNRISGQVGDLFSNSMTWRIETVNLSNNCFNGNLPQSLGNLSYLTNLDLHGNMLTGEIPLDLGDLMQLEYFDVSGNQLSGRIPDKLCSLVNLNYLDLSRNRLEGPIPRNGICQNLSRVRLAGNKNLCGQMLGINCQDKSIGRSVLYNAWRLAVITVTIILLTLSFAFLLHKWISRRQNDPEELKERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALEILDWNKRYKIATGAARGLAFLHHGFTPHIIHRDVKASNILLSGDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVCQKIKKGQAADVLDPTVLDADSKQMMLQMLQIAGVCISDNPANRPTMLQVHKFLKGMKGE*

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