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Report for Sequence Feature Glyma20g29451

Feature Type:gene_model
Chromosome:Gm20
Start:38306106
stop:38307992
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g29451
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52030AT Annotation by Michelle Graham. TAIR10: TraB family protein | chr5:21128819-21130034 FORWARD LENGTH=258 SoyBaseE_val: 6.00E-45ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21530Panther PHEROMONE SHUTDOWN PROTEIN JGI ISS
PF01963PFAM TraB family JGI ISS
UniRef100_G7IAR4UniRef Annotation by Michelle Graham. Most informative UniRef hit: TraB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IAR4_MEDTR SoyBaseE_val: 2.00E-49ISS
UniRef100_I1LDV2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LDV2_SOYBN SoyBaseE_val: 1.00E-51ISS

Expression Patterns of Glyma20g29451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g29451 not represented in the dataset
Glyma20g29451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g29451
ParalogEvidenceComments
Glyma10g38410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g29451 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g155300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g29451
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g29451
>Glyma20g29451.1   sequence type=CDS   gene model=Glyma20g29451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCGGTTCGGCCCTGTCCCTTATTGGAGGACCGAATTCTTCGAACCGGATTCCATTTGGTTGATTGGAACCACCCATGTTTCTGAGGATTCCGCCATGGAGCAATTGAGTTTTTCATACCCTTCCTTATTGTCACCTCTCATACATGAACGAGACATTTATCTTGCATGGTCATTGAAGCGGAGCAAAGCTGTGAATAACAGTAAAAACGTTGTGGGTGTCATTGGAAAAGGCCATATGAACGGTGTAATATATGCATTGTTATCCGACACAGGAAATTTGAGGTTTCGAGACCTTGTAGGGAAAGATTCATATGATGGAGGTTCTAGTGGTTGGATTGATGATCTAATCAAGAGCTTAGTGAGGGACACAATCATTATGGGCCTTATATGA
Predicted protein sequences of Glyma20g29451
>Glyma20g29451.1   sequence type=predicted peptide   gene model=Glyma20g29451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRFGPVPYWRTEFFEPDSIWLIGTTHVSEDSAMEQLSFSYPSLLSPLIHERDIYLAWSLKRSKAVNNSKNVVGVIGKGHMNGVIYALLSDTGNLRFRDLVGKDSYDGGSSGWIDDLIKSLVRDTIIMGLI*






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