Glyma20g28980 - SoyBase

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Report for Sequence Feature Glyma20g28980

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37939472
stop:	37943753
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22890	AT	Annotation by Michelle Graham. TAIR10: ATP sulfurylase 1 \| chr3:8112837-8114734 FORWARD LENGTH=463	SoyBase	E_val: 0	ISS
GO:0000103	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate assimilation	SoyBase	N/A	ISS
GO:0001887	GO-bp	Annotation by Michelle Graham. GO Biological Process: selenium compound metabolic process	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004781	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfate adenylyltransferase (ATP) activity	SoyBase	N/A	ISS
KOG0636	KOG	ATP sulfurylase (sulfate adenylyltransferase)	JGI		ISS
PTHR24799	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24799:SF2	Panther		JGI		ISS
PF01747	PFAM	ATP-sulfurylase	JGI		ISS
UniRef100_B9RTI9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sulfate adenylyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RTI9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NGL3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGL3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g28980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g28980 not represented in the dataset	Glyma20g28980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28980

Paralog	Evidence	Comments
Glyma10g38760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g151500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g28980

Limit To All Plant Sequences

>Glyma20g28980.1   sequence type=CDS   gene model=Glyma20g28980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCCATGGCCACTTTCTTCACCCAAACCTCCTTCCCCTCCCACTCTCTCTCCAAAACCTTCGATACCCATTTCGCCCCATCCCCGAAAGTCAACGTATTTGCGAACTTCCCGGCGAGGAGGCACGTGGGGGTTCGAGTTTCGAACGCGCTGATCGAACCAGACGGAGGGAAGCTGGTGGAGCTTGTGGTGAGGGATAATTCAGAAAGAGACTTGAAGAAGGGTGAGGCTCTTTCGTTGCCGAGGATCAAGCTTTCAAGGATTGACCTGGAGTGGGTCCATGTCCTCAGCGAAGGATGGGCCACACCCCTCAGAGGCTTCATGAGAGAAGCCGAGTTCCTCCAAACGCTTCATTTCAACTCTCTCCGACTCGATGATGGGTCGGTCGTGAACATGTCAGTGCCCATCGTGCTGGCTATTGATGATGCCCAGAAGCATAAGATCGGGGATAACAAAAGGGTTGCTCTTTTCGATTCCAAGGGAGACCCTGTTGCAATTCTCAATGATGTTGAGATTTATAAGCATCCTAAAGAAGAAAGAATAGCCCGAACTTGGGGAACCACTGCCCCTGGCCTACCCTATGTTGAACAAACTATAACCAATGCTGGAAATTGGTTGATTGGGGGTGACCTAGAGGTCATTGAACCAATCCAGTACAATGATGGACTTGATCATTTTCGGCTGTCTCCAGCAGAACTCCGTGCAGAGTTCACAAGGCGCAATGCAGATGCTGTGTTTGCCTTCCAGCTCCGGAATCCTGTTCACAATGGCCACGCTTTGCTAATGACTGACACCCGTAGGCGGCTTCTTGAGATGGGTTATAAGAATCCTGTCCTCTTGCTTCATCCACTGGGAGGCTACACCAAAGCTGATGATGTCCCACTTGATTGGCGAATGAAACAACATGAGAAGGTACTTGAGGATGGTGTTCTTGATCCAGAGACCACTGTGGTATCCATATTCCCTTCTCCCATGCACTATGCTGGACCCACGGAGGTGCAGTGGCATGCAAAGGCTAGGATCAATGCAGGGGCTAACTTCTACATCGTTGGTCGTGACCCCGCAGGCATGAGCCATCCAGTTGAGAAAAGAGATCTGTATGATGCTGACCATGGGAAGAAAGTATTGAGCATGGCACCGGGACTAGAGCGTCTAAACATTCTTCCTTTCAGGGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCATTCTTTGACCCTTCAAGGCCTCAGGACTTCCTGTTCATATCAGGCACAAAGATGCGCACACTGGCAAGGAACAAAGAAAGCCCTCCTGATGGATTTATGTGCCCTGGTGGTTGGAAGGTACTGGTTGAATACTATGATAGCTTAGTACTCTCAAGCAATGGCAAAGTGCCGGAAGCTGTTCCAGCTTAA

Predicted protein sequences of Glyma20g28980

Limit To All Plant Sequences

>Glyma20g28980.1   sequence type=predicted peptide   gene model=Glyma20g28980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASMATFFTQTSFPSHSLSKTFDTHFAPSPKVNVFANFPARRHVGVRVSNALIEPDGGKLVELVVRDNSERDLKKGEALSLPRIKLSRIDLEWVHVLSEGWATPLRGFMREAEFLQTLHFNSLRLDDGSVVNMSVPIVLAIDDAQKHKIGDNKRVALFDSKGDPVAILNDVEIYKHPKEERIARTWGTTAPGLPYVEQTITNAGNWLIGGDLEVIEPIQYNDGLDHFRLSPAELRAEFTRRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPVLLLHPLGGYTKADDVPLDWRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFISGTKMRTLARNKESPPDGFMCPGGWKVLVEYYDSLVLSSNGKVPEAVPA*

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