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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04200 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2225 | KOG | Proteins containing regions of low-complexity | JGI | ISS | |
| PTHR12895 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12895:SF1 | Panther | gb def: hypothetical protein f20d22.3 - arabidopsis thaliana | JGI | ISS | |
| PF09742 | PFAM | Dyggve-Melchior-Clausen syndrome protein | JGI | ISS | |
| UniRef100_O64487 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F20D22.3 protein n=1 Tax=Arabidopsis thaliana RepID=O64487_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233DE0C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DE0C related cluster n=1 Tax=unknown RepID=UPI000233DE0C | SoyBase | E_val: 0 | ISS |
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Glyma20g28880 not represented in the dataset |
Glyma20g28880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g38920 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g150500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g28880.2 sequence type=transcript gene model=Glyma20g28880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAACAAGTCCTTTACTTCTCTACAAAACCTTCGTTTCGAAGCTCTTTCTCGTTGTTGTTGTTGTTGTTGCGGTTCTTCTCCCTCTACACTCTCTGTTCTCTTCACGAGCTCGCGAGATTTTAAAAACCCATTCCCTTTTGATCTCACCGTGAGTTTTTGCGCAATGCCGTTACCCTGAATCTAGCACCGAATTAGATTTGATACACTATCTACGACCACATCGCGAGAGAAAAAAACCCTTACTTCTTCGAATGGGGTCGGTGCCGTCAACGCCGCGCAGGGGTGGCGCATACTCTCCGGAGACGGCGGAGTATCTGATCGGAACTTTCGTCGGCGACACGCCCTTCCCCCTCTCATCGGAGTTCTGGCAGAAATTGCTGGAGCTTCCTCTCAATGTTCAATGGTCCACTCAGCGTGTTCAACAAGCTTGCGAGCTATTAGCCAAAAACAATTGTCACACCAGGCATCTTGCGAAGATTTTGTTCCATCTAGCGTGCTGCTTGCAAGAGTACATGTCTTCTTCTGGTGCGTTGCCCTTGGTCTATGAAAAGGCTTTTAATGCAGTGTACATCAGTTCGATATTTTTAAAGCACTTGATTGAGAGCGTCCAAGGTGAGAATATCCAGTTATACCTGTCTCTTGAAGATAATGAGGATGTACAGAAGGATGTTTTGAGAGACCAAACCATCGAAAATCTTGTTATGCGTAATGTGCTGAGCTTTATAGCATCAGTAGAAGTGAGTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGGACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATGGCCCGTTCTAATGTTCCATCTAATAGGGCAACTTATTCCATCTTGTATGATGGAAATCAGAGTAGTGTGCTACAGAGAGTTGGTTCTGCAGCTGCAAATATTGTTTTATTTCCATTTAGTTATCTGGTCAGTTCGAGTGGTGAAGAATCAAAAAGTCCTATTGCAGATATCAGTATTCATGTGCTTCTTGTTCTCGTTCATTATCATAAATGTCTTGTGAGCGAGGATTACGCGAATCACAAATCTTCCACATCAGATTCTTTACTCAAAGAAAATCCTCACTTTTCTGACAATCCTTACTGCAAGGCCTTAGAACATGCAATTGATTGTGAATTGGATCGTGTAGATATTGAGGGCAATGCACATAGTGCTCGACACATAAAGCTTCCCTTTGCTTCATTGTTTGATACACTTGGCATATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTGTTAATGCCAATTCTGGAAGCTCTATACAATGCTCCAAGTAGGACTGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCTCTTGGTTCGCTCATGGTCATAATTCTTAGCAGAACTGTACAGTATAATTTGTCAAAACTACGGGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAGTATAACAAATTAGCTGAACGCAGAGATAATAAGCTCCATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATGTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCATGAAGTGCTCCAAGTCATAATTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAGATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTTCTATCCCATTGTGGATTCTCATTCAACACAGGAGCCATAAATTTGTTTCCAGTTGATCTACAAACAGAAAGACTTGAAAATGGGGTGGTGGGAAGCACACTCCAAAATGGTGATTTTGACAAGTCTGAGTATCAGCTTGATCCATAACAGGGGGAAGACAATATCGTTCTATTGGTGAATATTTGTACATATGCAATACGTACGATTTCTGGAAAAAAAAAAAAAGAAGGAAACTGCTAAGATGTGTATTGTTCTCATTCTTTTCTGTTCATAAATTTGAGTGTAGAGGTTCATTCCCGTAGATGAAAATCAGATATCAGTGTAATCAATAAGGGCTGACACTAGATATCCATGTCATATCATAAGTTTTTGGAGCTGTGCTCAGTTGCTTGTGGTTCGGTAACTGCTTTTCACCTGGGAATTCTCTCGCTTTGTATTGCATGTCTATTTACGATTGTTATAATTGAACAATAAGGGAATATTGACATAGAAATTATGATGCGATTCGTTTATCAATTATGCTTTGCTAATGCGATTTTATTATGTTTTTT
>Glyma20g28880.1 sequence type=CDS gene model=Glyma20g28880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCGGTGCCGTCAACGCCGCGCAGGGGTGGCGCATACTCTCCGGAGACGGCGGAGTATCTGATCGGAACTTTCGTCGGCGACACGCCCTTCCCCCTCTCATCGGAGTTCTGGCAGAAATTGCTGGAGCTTCCTCTCAATGTTCAATGGTCCACTCAGCGTGTTCAACAAGCTTGCGAGCTATTAGCCAAAAACAATTGTCACACCAGGCATCTTGCGAAGATTTTGTTCCATCTAGCGTGCTGCTTGCAAGAGTACATGTCTTCTTCTGGTGCGTTGCCCTTGGTCTATGAAAAGGCTTTTAATGCAGTGTACATCAGTTCGATATTTTTAAAGCACTTGATTGAGAGCGTCCAAGGTGAGAATATCCAGTTATACCTGTCTCTTGAAGATAATGAGGATGTACAGAAGGATGTTTTGAGAGACCAAACCATCGAAAATCTTGTTATGCGTAATGTGCTGAGCTTTATAGCATCAGTAGAAGTGAGTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGGACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATGGCCCGTTCTAATGTTCCATCTAATAGGGCAACTTATTCCATCTTGTATGATGGAAATCAGAGTAGTGTGCTACAGAGAGTTGGTTCTGCAGCTGTGGATCGTGTAGATATTGAGGGCAATGCACATAGTGCTCGACACATAAAGCTTCCCTTTGCTTCATTGTTTGATACACTTGGCATATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTGTTAATGCCAATTCTGGAAGCTCTATACAATGCTCCAAGTAGGACTGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCTCTTGGTTCGCTCATGGTCATAATTCTTAGCAGAACTGTACAGTATAATTTGTCAAAACTACGGGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAGTATAACAAATTAGCTGAACGCAGAGATAATAAGCTCCATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATGTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCATGAAGTGCTCCAAGTCATAATTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAGATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTTCTATCCCATTGTGGATTCTCATTCAACACAGGAGCCATAAATTTGTTTCCAGTTGATCTACAAACAGAAAGACTTGAAAATGGGGTGGTGGGAAGCACACTCCAAAATGGTGATTTTGACAAGTCTGAGTATCAGCTTGATCCATAA >Glyma20g28880.2 sequence type=CDS gene model=Glyma20g28880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCGGTGCCGTCAACGCCGCGCAGGGGTGGCGCATACTCTCCGGAGACGGCGGAGTATCTGATCGGAACTTTCGTCGGCGACACGCCCTTCCCCCTCTCATCGGAGTTCTGGCAGAAATTGCTGGAGCTTCCTCTCAATGTTCAATGGTCCACTCAGCGTGTTCAACAAGCTTGCGAGCTATTAGCCAAAAACAATTGTCACACCAGGCATCTTGCGAAGATTTTGTTCCATCTAGCGTGCTGCTTGCAAGAGTACATGTCTTCTTCTGGTGCGTTGCCCTTGGTCTATGAAAAGGCTTTTAATGCAGTGTACATCAGTTCGATATTTTTAAAGCACTTGATTGAGAGCGTCCAAGGTGAGAATATCCAGTTATACCTGTCTCTTGAAGATAATGAGGATGTACAGAAGGATGTTTTGAGAGACCAAACCATCGAAAATCTTGTTATGCGTAATGTGCTGAGCTTTATAGCATCAGTAGAAGTGAGTCCCGACACATTTCTCCTACATCTAGAGCTGCTTAATTTCATGATTATTGGAATGTCAACTCAACTTCTCTGTGGGCCATCTCCTGGACCAAATGATGTGAACCCCTTTCTTGATGCAGCAATGGCTCAGGACAGCTCTCTGGTTGGTGCAGTTGTTTGCAGATTGCTTCTAAATTTCATGGCCCGTTCTAATGTTCCATCTAATAGGGCAACTTATTCCATCTTGTATGATGGAAATCAGAGTAGTGTGCTACAGAGAGTTGGTTCTGCAGCTGCAAATATTGTTTTATTTCCATTTAGTTATCTGGTCAGTTCGAGTGGTGAAGAATCAAAAAGTCCTATTGCAGATATCAGTATTCATGTGCTTCTTGTTCTCGTTCATTATCATAAATGTCTTGTGAGCGAGGATTACGCGAATCACAAATCTTCCACATCAGATTCTTTACTCAAAGAAAATCCTCACTTTTCTGACAATCCTTACTGCAAGGCCTTAGAACATGCAATTGATTGTGAATTGGATCGTGTAGATATTGAGGGCAATGCACATAGTGCTCGACACATAAAGCTTCCCTTTGCTTCATTGTTTGATACACTTGGCATATGCTTAGCTGATGAGGCAGCTGTTCTATTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATGCATTGTTAATGCCAATTCTGGAAGCTCTATACAATGCTCCAAGTAGGACTGCTAATCAAATTTACATGTTGCTAATTATACTTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGATATTAACTGGTGTTCCTTGGTACAAAGAACGCCTGTTCCATCAGACTTCTCTTGGTTCGCTCATGGTCATAATTCTTAGCAGAACTGTACAGTATAATTTGTCAAAACTACGGGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACATGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAGTATAACAAATTAGCTGAACGCAGAGATAATAAGCTCCATATTGCAAAAGGAAACTCAGTTGAAGGAAACAACCTTGTAGAAGATATGTCAACTGAATTGCACATTTATACTGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTACCTCGGAATCCTGAGGTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTGTATTAGATTTTTTCAATAGTCGAATGGATGCTCAAAGAGAGGATGGTGACTGGTCAGTCCATGAAGTGCTCCAAGTCATAATTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAGATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTTCTATCCCATTGTGGATTCTCATTCAACACAGGAGCCATAAATTTGTTTCCAGTTGATCTACAAACAGAAAGACTTGAAAATGGGGTGGTGGGAAGCACACTCCAAAATGGTGATTTTGACAAGTCTGAGTATCAGCTTGATCCATAA
>Glyma20g28880.1 sequence type=predicted peptide gene model=Glyma20g28880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSVPSTPRRGGAYSPETAEYLIGTFVGDTPFPLSSEFWQKLLELPLNVQWSTQRVQQACELLAKNNCHTRHLAKILFHLACCLQEYMSSSGALPLVYEKAFNAVYISSIFLKHLIESVQGENIQLYLSLEDNEDVQKDVLRDQTIENLVMRNVLSFIASVEVSPDTFLLHLELLNFMIIGMSTQLLCGPSPGPNDVNPFLDAAMAQDSSLVGAVVCRLLLNFMARSNVPSNRATYSILYDGNQSSVLQRVGSAAVDRVDIEGNAHSARHIKLPFASLFDTLGICLADEAAVLLLYSLLQGNSAFLEYVLVRTDLDALLMPILEALYNAPSRTANQIYMLLIILLILSQDSSFNASIHKLILTGVPWYKERLFHQTSLGSLMVIILSRTVQYNLSKLRDVYLQTTCLATLANMAPHVHRLSAYASQRLVSLFDMLSRKYNKLAERRDNKLHIAKGNSVEGNNLVEDMSTELHIYTDFLRLVLEIINAILTYALPRNPEVVYAIMHRQEVFQPFKNHPRFNELIDNIYTVLDFFNSRMDAQREDGDWSVHEVLQVIIVNCRSWRGDGMKMFTQLRFTYEQESHPEEFFIPYVWQLVLSHCGFSFNTGAINLFPVDLQTERLENGVVGSTLQNGDFDKSEYQLDP* >Glyma20g28880.2 sequence type=predicted peptide gene model=Glyma20g28880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSVPSTPRRGGAYSPETAEYLIGTFVGDTPFPLSSEFWQKLLELPLNVQWSTQRVQQACELLAKNNCHTRHLAKILFHLACCLQEYMSSSGALPLVYEKAFNAVYISSIFLKHLIESVQGENIQLYLSLEDNEDVQKDVLRDQTIENLVMRNVLSFIASVEVSPDTFLLHLELLNFMIIGMSTQLLCGPSPGPNDVNPFLDAAMAQDSSLVGAVVCRLLLNFMARSNVPSNRATYSILYDGNQSSVLQRVGSAAANIVLFPFSYLVSSSGEESKSPIADISIHVLLVLVHYHKCLVSEDYANHKSSTSDSLLKENPHFSDNPYCKALEHAIDCELDRVDIEGNAHSARHIKLPFASLFDTLGICLADEAAVLLLYSLLQGNSAFLEYVLVRTDLDALLMPILEALYNAPSRTANQIYMLLIILLILSQDSSFNASIHKLILTGVPWYKERLFHQTSLGSLMVIILSRTVQYNLSKLRDVYLQTTCLATLANMAPHVHRLSAYASQRLVSLFDMLSRKYNKLAERRDNKLHIAKGNSVEGNNLVEDMSTELHIYTDFLRLVLEIINAILTYALPRNPEVVYAIMHRQEVFQPFKNHPRFNELIDNIYTVLDFFNSRMDAQREDGDWSVHEVLQVIIVNCRSWRGDGMKMFTQLRFTYEQESHPEEFFIPYVWQLVLSHCGFSFNTGAINLFPVDLQTERLENGVVGSTLQNGDFDKSEYQLDP*
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