Glyma20g28870 - SoyBase

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Report for Sequence Feature Glyma20g28870

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37819562
stop:	37822135
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22830	AT	Annotation by Michelle Graham. TAIR10: heat shock transcription factor A6B \| chr3:8078981-8080895 FORWARD LENGTH=406	SoyBase	E_val: 2.00E-129	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0627	KOG	Heat shock transcription factor	JGI		ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_B9RTK1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock factor protein HSF30, putative n=1 Tax=Ricinus communis RepID=B9RTK1_RICCO	SoyBase	E_val: 2.00E-136	ISS
UniRef100_I1NGK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NGK0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g28870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28870

Paralog	Evidence	Comments
Glyma10g38930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g150300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g28870

Limit To All Plant Sequences

>Glyma20g28870.1   sequence type=CDS   gene model=Glyma20g28870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCTCATGGTCAAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTTGTGGTGGCTATGATCCGCAGCCAATACTGGTTGTTCCTCAACCAATTGAGGGGCTTCATGAAACTGGCCCTCCACCATTCCTCACAAAAACATACGACATCGTTGATGACCCTTCCACAAACCATATAGTCTCCTGGAGCACGGGGAACAACAGCTTCGTTGTGTGGGATCCACAGGCCTTTTCCATAACCCTTCTCCCCAAATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAGAAAGGTTGATCCAGATAAGTGGGAGTTTGCTAATGAGTTGTTTCTTAGAGGGCAAAAGATTCTTCTGAAGAACATTAGAAGGAGGAAAGCAAATCATCAATCTCACGCAATGCAGCAGCAAGGTGTAGTAGAGCCTTGTGTTGAGGTGGGGCCGTTTGGATTAGATGGAGAAGTTGATCGGTTGAGGCGAGACAGGCAAGTTCTTATGGTGGAGTTGGTGAAGCTCAGACAACAGCAGCAAAGTACCAAATCTCACCTTCAAGAAATGGAAGGAAGGCTTAAAAAGACTGAACAGAAACAGCAACAAATGATGAATTTTTTGGCCAGGGCAATGCAGAATCCAAACTTCGTCCAACAATTAGCTCAGCAAAAGGAGTACTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGGAGGCCTATTGATCAAGGGCCTAGTAATGTTGTTGAAGTAGGTGGTGATGATGAGTTATTAGGTTGTGCTGAAGAGTGTTCAAATTTCGTTAAACTTGAACCGCAGGAATACACTGCCAAGGTATTAGAGTTTGAGGTACCTGATCTACCCCTTGTTTTGAATCTTGATGAGGAGAATATTGAAAGCCAAAAGAGAATATTGGAGGAAGATAATATTCGACTAGAAAGTAGAGATAAAGATATTGATGAAGTGTTTTGGCAAGATTTGCTTAATGAGGGTATTGAAGATCATGGTGTACTAGGTGTTGAAGATGTAGATGTATTGGCCAATCAACTTGGTTATTTGGCCTCTAGTCCTAAATAG

Predicted protein sequences of Glyma20g28870

Limit To All Plant Sequences

>Glyma20g28870.1   sequence type=predicted peptide   gene model=Glyma20g28870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPHGQVKEEFLGESSSFCGGYDPQPILVVPQPIEGLHETGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSITLLPKFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANELFLRGQKILLKNIRRRKANHQSHAMQQQGVVEPCVEVGPFGLDGEVDRLRRDRQVLMVELVKLRQQQQSTKSHLQEMEGRLKKTEQKQQQMMNFLARAMQNPNFVQQLAQQKEYWRKELEEAFSKKRRRPIDQGPSNVVEVGGDDELLGCAEECSNFVKLEPQEYTAKVLEFEVPDLPLVLNLDEENIESQKRILEEDNIRLESRDKDIDEVFWQDLLNEGIEDHGVLGVEDVDVLANQLGYLASSPK*

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