Glyma20g28800 - SoyBase

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Report for Sequence Feature Glyma20g28800

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37707540
stop:	37710832
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14750	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 19 \| chr4:8470449-8471903 FORWARD LENGTH=387	SoyBase	E_val: 1.00E-99	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_B9RTL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTL0_RICCO	SoyBase	E_val: 2.00E-178	ISS
UniRef100_UPI0001BA913B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA913B related cluster n=1 Tax=unknown RepID=UPI0001BA913B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g28800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28800

Paralog	Evidence	Comments
Glyma10g39030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g149600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g28800

Limit To All Plant Sequences

>Glyma20g28800.2   sequence type=transcript   gene model=Glyma20g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGACAGGCAAATGGCTTAGAAACTTGTTGACAACAGGTAAGAAAGACAAGGAAAAGGAGAAATCTACAATCAAGCTGAATTCTTCTTCAAATGGAACAGAAAACTCAACCACTCCAACTTCCTCAACCCCAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCCTCAGCCACTGCCACTACTGCCACAACCACACCAACAACAACTTCCAAGGAATTGAATTTTGTAGAAACAAATGTGACTGCTTCACAGACAGTGCAAACTGACACTGATATTCAGAATGAGCAGAGGAAGCATGTCATGGCTGTGGCTGCAGCCACTGCAGCAGCAGCTGATGCTGCAGTGGCAGCTGCTCAGGCTGTAGCTGCTGTGATCCGTTTGACTTCTACTTCCAATGCAACATCCAAAAGTATTGAAGAGGCTGCTGCCATTAAAATCCAATCTGCCTTTCGCTCTCACTTGGCAAAAAAAGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAGGCACTAGTAAGGGGTCACTTGGTGAGAAAACAGGCCAAGGCAACACTGAGATGCATGCAGGCTTTGGTGACAGCACAAGCCAGAGCTCGTGCTCAGAGGATCCAAATGGGGTCAGAAGGAAAGGCCAATCAAAAGCACAGAAATGCTGCCGAAGATGATTTGCTCAGGCATATATATAATGAAATGGACAGAGGCTTGGAAGACAACATCAAGATTGTAGAGATGGATGTTTGTGAATCAAAAGTTAACTCCAGAAGCAGCAGTGTGTATCATCATGGACATCAAGAACAATATGACAATAGATTTTCCACACATTATTCAACAAATGGTTCCTACACAAAAGAAGAAAAGTACAAGGTATCACCGGCTCCATCAGCATTGACAGAGTCGAGTCCAAGAGCCTGCAGTGGTCATTTTGATGACTGTTTCAGCACAGCACAAAGCAGCCCTCACCCTCAGTTCTACTCTGCAGTGTCAAGATCAGAAGATTCAAAGCACCCTTTTGCTTTCCATAGGCCAGCTTATGCAGAATCCATGTCCTATGACTACCCTTTGTTTCCAAATTACATGGCTAACACCGAATCATCAAGGGCTAAAGTCAGGTCACACAGTGCACCAAAACAAAGACCGGATTCATTCGAGAGGCAACCAAGCCGGCGAAGAGCTTCAGTTGAGGGAAGAAATGTCCCAAGGCCAATGAGGATGCAGAGATCATCTTCACATGTGGGTGCCACTGTCCATAACTACCATTATCCTTGGTCAATAAAGCTCGATAGATCCGCAGTTTCACTCAAAGATAGTGAGTGTGGCTCTACAAGTACAGTGCTCACTAACACTAATTATTGCAGATCTCTTGTTGCATATGGCGTGAGTACTTACCATCTCTCATGCATAAATTCTTATAAAAAAAATTGAATACTAGAGATGAACAAGAACAATAATTAAGAGTAAACATGTTTATTGTTTAATAGTATATATGTGTGTATAGTCTTCATATCACTTAATTAGTAACATTATTGTTTATTGGATCTGACAATG

Coding sequences of Glyma20g28800

Limit To All Plant Sequences

>Glyma20g28800.1   sequence type=CDS   gene model=Glyma20g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGACAGGCAAATGGCTTAGAAACTTGTTGACAACAGGTAAGAAAGACAAGGAAAAGGAGAAATCTACAATCAAGCTGAATTCTTCTTCAAATGGAACAGAAAACTCAACCACTCCAACTTCCTCAACCCCAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCCTCAGCCACTGCCACTACTGCCACAACCACACCAACAACAACTTCCAAGGAATTGAATTTTGTAGAAACAAATGTGACTGCTTCACAGACAGTGCAAACTGACACTGATATTCAGAATGAGCAGAGGAAGCATGTCATGGCTGTGGCTGCAGCCACTGCAGCAGCAGCTGATGCTGCAGTGGCAGCTGCTCAGGCTGTAGCTGCTGTGATCCGTTTGACTTCTACTTCCAATGCAACATCCAAAAGTATTGAAGAGGCTGCTGCCATTAAAATCCAATCTGCCTTTCGCTCTCACTTGGCAAAAAAAGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAGGCACTAGTAAGGGGTCACTTGGTGAGAAAACAGGCCAAGGCAACACTGAGATGCATGCAGGCTTTGGTGACAGCACAAGCCAGAGCTCGTGCTCAGAGGATCCAAATGGGGTCAGAAGGAAAGGCCAATCAAAAGCACAGAAATGCTGCCGAAGATGATTTGCTCAGGCATATATATAATGAAATGGACAGAGGCTTGGAAGACAACATCAAGATTGTAGAGATGGATGTTTGTGAATCAAAAGTTAACTCCAGAAGCAGCAGTGTGTATCATCATGGACATCAAGAACAATATGACAATAGATTTTCCACACATTATTCAACAAATGGTTCCTACACAAAAGAAGAAAAGTACAAGGTATCACCGGCTCCATCAGCATTGACAGAGTCGAGTCCAAGAGCCTGCAGTGGTCATTTTGATGACTGTTTCAGCACAGCACAAAGCAGCCCTCACCCTCAGTTCTACTCTGCAGTGTCAAGATCAGAAGATTCAAAGCACCCTTTTGCTTTCCATAGGCCAGCTTATGCAGAATCCATGTCCTATGACTACCCTTTGTTTCCAAATTACATGGCTAACACCGAATCATCAAGGGCTAAAGTCAGGTCACACAGTGCACCAAAACAAAGACCGGATTCATTCGAGAGGCAACCAAGCCGGCGAAGAGCTTCAGTTGAGGGAAGAAATGTCCCAAGGCCAATGAGGATGCAGAGATCATCTTCACATGTGGGTGCCACTGTCCATAACTACCATTATCCTTGGTCAATAAAGCTCGATAGATCCGCAGTTTCACTCAAAGATAGTGAGTGTGGCTCTACAAGTACAGTGCTCACTAACACTAATTATTGCAGATCTCTTGTTGCATATGGCTCACGTGGAGATGGGTACTGA

>Glyma20g28800.2   sequence type=CDS   gene model=Glyma20g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGACAGGCAAATGGCTTAGAAACTTGTTGACAACAGGTAAGAAAGACAAGGAAAAGGAGAAATCTACAATCAAGCTGAATTCTTCTTCAAATGGAACAGAAAACTCAACCACTCCAACTTCCTCAACCCCAAAGGAGAAAAAGAGATGGAGTTTTAGAAGATCATCAGCCTCAGCCACTGCCACTACTGCCACAACCACACCAACAACAACTTCCAAGGAATTGAATTTTGTAGAAACAAATGTGACTGCTTCACAGACAGTGCAAACTGACACTGATATTCAGAATGAGCAGAGGAAGCATGTCATGGCTGTGGCTGCAGCCACTGCAGCAGCAGCTGATGCTGCAGTGGCAGCTGCTCAGGCTGTAGCTGCTGTGATCCGTTTGACTTCTACTTCCAATGCAACATCCAAAAGTATTGAAGAGGCTGCTGCCATTAAAATCCAATCTGCCTTTCGCTCTCACTTGGCAAAAAAAGCATTGTGTGCTCTAAGAGGATTAGTGAAGTTGCAGGCACTAGTAAGGGGTCACTTGGTGAGAAAACAGGCCAAGGCAACACTGAGATGCATGCAGGCTTTGGTGACAGCACAAGCCAGAGCTCGTGCTCAGAGGATCCAAATGGGGTCAGAAGGAAAGGCCAATCAAAAGCACAGAAATGCTGCCGAAGATGATTTGCTCAGGCATATATATAATGAAATGGACAGAGGCTTGGAAGACAACATCAAGATTGTAGAGATGGATGTTTGTGAATCAAAAGTTAACTCCAGAAGCAGCAGTGTGTATCATCATGGACATCAAGAACAATATGACAATAGATTTTCCACACATTATTCAACAAATGGTTCCTACACAAAAGAAGAAAAGTACAAGGTATCACCGGCTCCATCAGCATTGACAGAGTCGAGTCCAAGAGCCTGCAGTGGTCATTTTGATGACTGTTTCAGCACAGCACAAAGCAGCCCTCACCCTCAGTTCTACTCTGCAGTGTCAAGATCAGAAGATTCAAAGCACCCTTTTGCTTTCCATAGGCCAGCTTATGCAGAATCCATGTCCTATGACTACCCTTTGTTTCCAAATTACATGGCTAACACCGAATCATCAAGGGCTAAAGTCAGGTCACACAGTGCACCAAAACAAAGACCGGATTCATTCGAGAGGCAACCAAGCCGGCGAAGAGCTTCAGTTGAGGGAAGAAATGTCCCAAGGCCAATGAGGATGCAGAGATCATCTTCACATGTGGGTGCCACTGTCCATAACTACCATTATCCTTGGTCAATAAAGCTCGATAGATCCGCAGTTTCACTCAAAGATAGTGAGTGTGGCTCTACAAGTACAGTGCTCACTAACACTAATTATTGCAGATCTCTTGTTGCATATGGCGTGAGTACTTACCATCTCTCATGCATAAATTCTTATAAAAAAAATTGA

Predicted protein sequences of Glyma20g28800

Limit To All Plant Sequences

>Glyma20g28800.1   sequence type=predicted peptide   gene model=Glyma20g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKTGKWLRNLLTTGKKDKEKEKSTIKLNSSSNGTENSTTPTSSTPKEKKRWSFRRSSASATATTATTTPTTTSKELNFVETNVTASQTVQTDTDIQNEQRKHVMAVAAATAAAADAAVAAAQAVAAVIRLTSTSNATSKSIEEAAAIKIQSAFRSHLAKKALCALRGLVKLQALVRGHLVRKQAKATLRCMQALVTAQARARAQRIQMGSEGKANQKHRNAAEDDLLRHIYNEMDRGLEDNIKIVEMDVCESKVNSRSSSVYHHGHQEQYDNRFSTHYSTNGSYTKEEKYKVSPAPSALTESSPRACSGHFDDCFSTAQSSPHPQFYSAVSRSEDSKHPFAFHRPAYAESMSYDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRRASVEGRNVPRPMRMQRSSSHVGATVHNYHYPWSIKLDRSAVSLKDSECGSTSTVLTNTNYCRSLVAYGSRGDGY*

>Glyma20g28800.2   sequence type=predicted peptide   gene model=Glyma20g28800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKTGKWLRNLLTTGKKDKEKEKSTIKLNSSSNGTENSTTPTSSTPKEKKRWSFRRSSASATATTATTTPTTTSKELNFVETNVTASQTVQTDTDIQNEQRKHVMAVAAATAAAADAAVAAAQAVAAVIRLTSTSNATSKSIEEAAAIKIQSAFRSHLAKKALCALRGLVKLQALVRGHLVRKQAKATLRCMQALVTAQARARAQRIQMGSEGKANQKHRNAAEDDLLRHIYNEMDRGLEDNIKIVEMDVCESKVNSRSSSVYHHGHQEQYDNRFSTHYSTNGSYTKEEKYKVSPAPSALTESSPRACSGHFDDCFSTAQSSPHPQFYSAVSRSEDSKHPFAFHRPAYAESMSYDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRRASVEGRNVPRPMRMQRSSSHVGATVHNYHYPWSIKLDRSAVSLKDSECGSTSTVLTNTNYCRSLVAYGVSTYHLSCINSYKKN*

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