SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22640 | AT | Annotation by Michelle Graham. TAIR10: cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486 | SoyBase | E_val: 2.00E-65 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0045735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity | SoyBase | N/A | ISS |
| PF00190 | PFAM | Cupin | JGI | ISS | |
| UniRef100_Q94LX2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Beta-conglycinin alpha subunit n=2 Tax=Glycine max RepID=Q94LX2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94LX2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-conglycinin alpha subunit n=2 Tax=Glycine max RepID=Q94LX2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma20g28660 not represented in the dataset |
Glyma20g28660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g148300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g28660.1 sequence type=CDS gene model=Glyma20g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGAGAGCACGGTTCCCATTACTGTTGCTGGGACTTGTTTTCCTGGCTTCAGTTTCTGTCTCATTTGGCATTGCTTACTGGGAAAAAGAGAACCCCAAACACAACAAGTGTCTCCAGAGTTGCAATAGCGAGAGAGACTCGTACAGGAACCAAGCATGCCACGCTCGTTGCAACCTCCTTAAGGTGGAGAAAGAAGAATGTGAAGAAGGTGAAATTCCACGACCACGACCACGACCACAACACCCGGAGAGGGAACCTCAGCAACCCGGTGAGAAGGAGGAAGACGAAGATGAGCAACCACGTCCAATCCCATTCCCACGCCCACAACCTCGTCAAGAAGAAGAGCACGAGCAGAGAGAGGAACAGGAATGGCCTCGCAAGGAGGAAAAACGCGGAGAAAAGGGAAGTGAAGAGGAAGATGAGGATGAGGATGAGGAACAAGATGAACGTCAATTCCCATTCCCACGCCCACCTCATCAGAAGGAAGAGCGAAAGCAAGAGGAAGATGAGGATGAGGAGCAGCAGCGAGAGAGCGAAGAAAGTGAAGATTCTGAGTTACGAAGACATAAGAATAAGAACCCTTTTCTCTTCGGCTCTAACAGGTTCGAAACTCTCTTCAAAAACCAATATGGTCGCATTCGCGTCCTCCAGAGGTTCAACCAACGCTCCCCACAACTTCAGAATCTCCGAGACTACCGCATTTTGGAGTTCAACTCCAAACCCAACACCCTCCTTCTCCCCAACCATGCTGACGCTGATTACCTCATCGTTATCCTTAACGGGACTGCCATTCTTTCCTTGGTGAACAACGACGACAGAGACTCCTACAGACTTCAATCTGGTGATGCCCTGAGAGTCCCCTCAGGAACCACATACTATGTGGTCAACCCTGACAACAACGAAAATCTCAGATTAATAACACTCGCCATACCCGTTAACAAGCCTGGTAGATTTGAGAGTTTCTTCCTATCTAGCACTGAAGCTCAACAATCCTACTTGCAAGGATTCAGCAGGAACATTTTAGAGGCCTCCTACGATACCAAATTCGAGGAGATAAACAAGGTTCTGTTTAGTAGAGAGGAAGGGCAGCAGCAAGGGGAGCAGAGGCTGCAAGAGAGCGTGATTGTGGAAATCTCGAAGGAACAGATTCGGGCACTGAGCAAACGTGCCAAATCTAGTTCAAGGAAAACCATTTCTTCTGAAGATAAACCTTTTAACTTGAGAAGCCGCGACCCCATCTACTCCAACAAGCTTGGCAAGTTCTTTGAGATCACCCCAGAGAAAAACCCCCAGCTTCGGGACTTGGATATCTTCCTCAGTATTGTGGATATGAACGAGGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCGATAGTGATACTGGTAATTAATGAAGGAGATGCAAACATTGAACTTGTTGGCCTAAAAGAACAACAACAGGAGCAGCAACAGGAAGAGCAACCTTTGGAAGTGCGGAAATATAGAGCCGAATTGTCTGAACAAGATATATTTGTAATCCCAGCAGGTTATCCAGTTGTGGTCAACGCTACCTCAAATCTGAATTTCTTTGCTATTGGTATTAATGCCGAGAACAACCAGAGGAACTTCCTCGCAGGTTCGCAAGACAATGTGATAAGCCAGATACCTAGTCAAGTGCAGGAGCTTGCATTCCCTGGGTCTGCACAAGCTGTTGAGAAGCTATTAAAGAACCAAAGAGAATCCTACTTTGTGGATGCTCAGCCTAAGAAGAAAGAGGAGGGGAATAAGGGAAGAAAGGGTCCTTTGTCTTCAATTTTGAGGGCTTTTTACTGA
>Glyma20g28660.1 sequence type=predicted peptide gene model=Glyma20g28660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMRARFPLLLLGLVFLASVSVSFGIAYWEKENPKHNKCLQSCNSERDSYRNQACHARCNLLKVEKEECEEGEIPRPRPRPQHPEREPQQPGEKEEDEDEQPRPIPFPRPQPRQEEEHEQREEQEWPRKEEKRGEKGSEEEDEDEDEEQDERQFPFPRPPHQKEERKQEEDEDEEQQRESEESEDSELRRHKNKNPFLFGSNRFETLFKNQYGRIRVLQRFNQRSPQLQNLRDYRILEFNSKPNTLLLPNHADADYLIVILNGTAILSLVNNDDRDSYRLQSGDALRVPSGTTYYVVNPDNNENLRLITLAIPVNKPGRFESFFLSSTEAQQSYLQGFSRNILEASYDTKFEEINKVLFSREEGQQQGEQRLQESVIVEISKEQIRALSKRAKSSSRKTISSEDKPFNLRSRDPIYSNKLGKFFEITPEKNPQLRDLDIFLSIVDMNEGALLLPHFNSKAIVILVINEGDANIELVGLKEQQQEQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSNLNFFAIGINAENNQRNFLAGSQDNVISQIPSQVQELAFPGSAQAVEKLLKNQRESYFVDAQPKKKEEGNKGRKGPLSSILRAFY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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