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Report for Sequence Feature Glyma20g28660

Feature Type:gene_model
Chromosome:Gm20
Start:37579681
stop:37582239
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g28660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22640AT Annotation by Michelle Graham. TAIR10: cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486 SoyBaseE_val: 2.00E-65ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0045735GO-mf Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity SoyBaseN/AISS
PF00190PFAM Cupin JGI ISS
UniRef100_Q94LX2UniRef Annotation by Michelle Graham. Best UniRef hit: Beta-conglycinin alpha subunit n=2 Tax=Glycine max RepID=Q94LX2_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q94LX2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-conglycinin alpha subunit n=2 Tax=Glycine max RepID=Q94LX2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g28660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma20g28660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g148300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g28660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g28660
>Glyma20g28660.1   sequence type=CDS   gene model=Glyma20g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGAGCACGGTTCCCATTACTGTTGCTGGGACTTGTTTTCCTGGCTTCAGTTTCTGTCTCATTTGGCATTGCTTACTGGGAAAAAGAGAACCCCAAACACAACAAGTGTCTCCAGAGTTGCAATAGCGAGAGAGACTCGTACAGGAACCAAGCATGCCACGCTCGTTGCAACCTCCTTAAGGTGGAGAAAGAAGAATGTGAAGAAGGTGAAATTCCACGACCACGACCACGACCACAACACCCGGAGAGGGAACCTCAGCAACCCGGTGAGAAGGAGGAAGACGAAGATGAGCAACCACGTCCAATCCCATTCCCACGCCCACAACCTCGTCAAGAAGAAGAGCACGAGCAGAGAGAGGAACAGGAATGGCCTCGCAAGGAGGAAAAACGCGGAGAAAAGGGAAGTGAAGAGGAAGATGAGGATGAGGATGAGGAACAAGATGAACGTCAATTCCCATTCCCACGCCCACCTCATCAGAAGGAAGAGCGAAAGCAAGAGGAAGATGAGGATGAGGAGCAGCAGCGAGAGAGCGAAGAAAGTGAAGATTCTGAGTTACGAAGACATAAGAATAAGAACCCTTTTCTCTTCGGCTCTAACAGGTTCGAAACTCTCTTCAAAAACCAATATGGTCGCATTCGCGTCCTCCAGAGGTTCAACCAACGCTCCCCACAACTTCAGAATCTCCGAGACTACCGCATTTTGGAGTTCAACTCCAAACCCAACACCCTCCTTCTCCCCAACCATGCTGACGCTGATTACCTCATCGTTATCCTTAACGGGACTGCCATTCTTTCCTTGGTGAACAACGACGACAGAGACTCCTACAGACTTCAATCTGGTGATGCCCTGAGAGTCCCCTCAGGAACCACATACTATGTGGTCAACCCTGACAACAACGAAAATCTCAGATTAATAACACTCGCCATACCCGTTAACAAGCCTGGTAGATTTGAGAGTTTCTTCCTATCTAGCACTGAAGCTCAACAATCCTACTTGCAAGGATTCAGCAGGAACATTTTAGAGGCCTCCTACGATACCAAATTCGAGGAGATAAACAAGGTTCTGTTTAGTAGAGAGGAAGGGCAGCAGCAAGGGGAGCAGAGGCTGCAAGAGAGCGTGATTGTGGAAATCTCGAAGGAACAGATTCGGGCACTGAGCAAACGTGCCAAATCTAGTTCAAGGAAAACCATTTCTTCTGAAGATAAACCTTTTAACTTGAGAAGCCGCGACCCCATCTACTCCAACAAGCTTGGCAAGTTCTTTGAGATCACCCCAGAGAAAAACCCCCAGCTTCGGGACTTGGATATCTTCCTCAGTATTGTGGATATGAACGAGGGAGCTCTTCTTCTACCACACTTCAATTCAAAGGCGATAGTGATACTGGTAATTAATGAAGGAGATGCAAACATTGAACTTGTTGGCCTAAAAGAACAACAACAGGAGCAGCAACAGGAAGAGCAACCTTTGGAAGTGCGGAAATATAGAGCCGAATTGTCTGAACAAGATATATTTGTAATCCCAGCAGGTTATCCAGTTGTGGTCAACGCTACCTCAAATCTGAATTTCTTTGCTATTGGTATTAATGCCGAGAACAACCAGAGGAACTTCCTCGCAGGTTCGCAAGACAATGTGATAAGCCAGATACCTAGTCAAGTGCAGGAGCTTGCATTCCCTGGGTCTGCACAAGCTGTTGAGAAGCTATTAAAGAACCAAAGAGAATCCTACTTTGTGGATGCTCAGCCTAAGAAGAAAGAGGAGGGGAATAAGGGAAGAAAGGGTCCTTTGTCTTCAATTTTGAGGGCTTTTTACTGA
Predicted protein sequences of Glyma20g28660
>Glyma20g28660.1   sequence type=predicted peptide   gene model=Glyma20g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMRARFPLLLLGLVFLASVSVSFGIAYWEKENPKHNKCLQSCNSERDSYRNQACHARCNLLKVEKEECEEGEIPRPRPRPQHPEREPQQPGEKEEDEDEQPRPIPFPRPQPRQEEEHEQREEQEWPRKEEKRGEKGSEEEDEDEDEEQDERQFPFPRPPHQKEERKQEEDEDEEQQRESEESEDSELRRHKNKNPFLFGSNRFETLFKNQYGRIRVLQRFNQRSPQLQNLRDYRILEFNSKPNTLLLPNHADADYLIVILNGTAILSLVNNDDRDSYRLQSGDALRVPSGTTYYVVNPDNNENLRLITLAIPVNKPGRFESFFLSSTEAQQSYLQGFSRNILEASYDTKFEEINKVLFSREEGQQQGEQRLQESVIVEISKEQIRALSKRAKSSSRKTISSEDKPFNLRSRDPIYSNKLGKFFEITPEKNPQLRDLDIFLSIVDMNEGALLLPHFNSKAIVILVINEGDANIELVGLKEQQQEQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSNLNFFAIGINAENNQRNFLAGSQDNVISQIPSQVQELAFPGSAQAVEKLLKNQRESYFVDAQPKKKEEGNKGRKGPLSSILRAFY*






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