SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G22440 | AT | Annotation by Michelle Graham. TAIR10: FRIGIDA-like protein | chr3:7959854-7961886 FORWARD LENGTH=532 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF07899 | PFAM | Frigida-like protein | JGI | ISS | |
| UniRef100_I1NGF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGF2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_J7HA66 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Frigida-like protein n=1 Tax=Medicago sativa RepID=J7HA66_MEDSA | SoyBase | E_val: 0 | ISS |
|
Glyma20g28440 not represented in the dataset |
Glyma20g28440 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g39330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g146100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g28440.2 sequence type=transcript gene model=Glyma20g28440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACATTGATTGATTGAAGCCAGCGAGTGAGTGAGCGAGCCAGGTAGGGTTTTCGGTGTTCCCCTCTTTGTGTTCGTTCGCGACGATGGGGTCCATCCCCGATCCAGGCGAGTTGAGCGAGTTGACTCAGCCGAGCTTCGACGAGTTCCAGCGCCAAACCTCTCTCATGACCAGCTGCACCCTCCTCTGGAAGGAGCTCTCCGACCACTTCTCCTCCCTCGAGCAAGACCTCAACCACAAATCCGAAGCCCTCAAGCGCAAGATTCACACCCTCGACAACTCCACCTCGGACTCCCTCCGCCTCCTCGACCACCGCGAAACCTCTCTCGACGCCACTCTCCAGATCGCCCTCCGCACGCTCGACACGCGCCGCACCGCTGCTCTCTCCGCCCTCCTCCACGACGCTGACGACACCTCCCCCGACGGCGAGGTCGATGACACCGCCGGCCTCGTCCTCAAGCTCAAGTCCTTCTGCCTCCGCATGGACGCGTTCGGCTTCTTCGCCTTCGTCAGCGCCAAGAAGAAGGAGCTGGACGGCCTACGCGCCGAGATGCCGGTGGCGCTGGCGGAGTGCGTCGATCCGGCGAAATTCGTGCTGGAGGCGATCTCGGAGGTGTTTCCGGTCGACAAGAGAGGGGAGAAGGCCGGCCACGACTTGGGCTGGGCCTGCGTCCTTGTCCTGGAGTCGTTAATTCCGGTCGTCGTCGACCCCGTCATCGGAAAATCGAGGTTGTTGGTTACCCCTACCGTGAAGGAGCATGCCACGGAGATCGCGGAGACTTGGAAGAGCAGCCTGGAGGATCGTGGCGGCGTGGAAAACCTGAAGACACCTGACGTCCACACTTTCTTGCAGCACGTTGTTACCTTCGGGATTGTCAAGAACGATGACTCCGATTTGTACCGGAAGCTTGTTATTGCTTCCGCTTGGAGGAAACAGATGCCGAAGCTCGCGCTTTCGCTTGGTCTCGCTCAGCAAATGCCTGATATGATTGAAGAGTTGATCAGCAAAGGGCAGCAGCTTGATGCGGTTCACTTTACCTATGAAGTGGGTCTGGTGGAAAAGTTCCCTCCTGTTCCCTTGTTGAAGTCTTTTCTCAAGGATGCTAAGAAAGTTGCGGCTTCTATTTTGGAAGATCCTAATAATGCAGGCCGAGCTGCGGTACTTTTCTCTCTTTTTAATATCTATTTCTATGATTTTCTGTGGTTTTTGGTTTAGTTCGTGAATGGATAAACTTTTTCATAAGCATTTGTAGCAGAATGAAATAAGTAAAAATAAGATGGGAAAATGAATTGAGCTTATCTTAATCTAAGTTCAACTTACACATCTCAACTTTTGGAGAAGTTAAACATGAGAACTATTATAATAGTTAAATTTTCGTTTATGGAGTAGTTGGATTCATTTTACCTTTTATTTTCTACTATAATGGAGAAGATTATCCAAATAGACTATTAATATTACTAGTTCAATGTTGTGAAAGCTGAACTGTCTTTTCTTTTATGCTGGATGAGAGGTAGGTAGCAAGTCTGTTATCTTGTGAATGTTTAGTTGATACTCGATACAAGTTTTCTATTTTTGGTTTATTTTGTATAGACAGAGGATGCAGCTTATTAGAAATCAATGTACCTAGGATTCTGTTTTTAAGATGGGGGAAGGCCGAAGTGAGTGGTGAGATCTTTCTGGGTGTTAGTGTTAGTGTTAGTAGTTGGTTAGATTCTGA
>Glyma20g28440.1 sequence type=CDS gene model=Glyma20g28440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCCATCCCCGATCCAGGCGAGTTGAGCGAGTTGACTCAGCCGAGCTTCGACGAGTTCCAGCGCCAAACCTCTCTCATGACCAGCTGCACCCTCCTCTGGAAGGAGCTCTCCGACCACTTCTCCTCCCTCGAGCAAGACCTCAACCACAAATCCGAAGCCCTCAAGCGCAAGATTCACACCCTCGACAACTCCACCTCGGACTCCCTCCGCCTCCTCGACCACCGCGAAACCTCTCTCGACGCCACTCTCCAGATCGCCCTCCGCACGCTCGACACGCGCCGCACCGCTGCTCTCTCCGCCCTCCTCCACGACGCTGACGACACCTCCCCCGACGGCGAGGTCGATGACACCGCCGGCCTCGTCCTCAAGCTCAAGTCCTTCTGCCTCCGCATGGACGCGTTCGGCTTCTTCGCCTTCGTCAGCGCCAAGAAGAAGGAGCTGGACGGCCTACGCGCCGAGATGCCGGTGGCGCTGGCGGAGTGCGTCGATCCGGCGAAATTCGTGCTGGAGGCGATCTCGGAGGTGTTTCCGGTCGACAAGAGAGGGGAGAAGGCCGGCCACGACTTGGGCTGGGCCTGCGTCCTTGTCCTGGAGTCGTTAATTCCGGTCGTCGTCGACCCCGTCATCGGAAAATCGAGGTTGTTGGTTACCCCTACCGTGAAGGAGCATGCCACGGAGATCGCGGAGACTTGGAAGAGCAGCCTGGAGGATCGTGGCGGCGTGGAAAACCTGAAGACACCTGACGTCCACACTTTCTTGCAGCACGTTGTTACCTTCGGGATTGTCAAGAACGATGACTCCGATTTGTACCGGAAGCTTGTTATTGCTTCCGCTTGGAGGAAACAGATGCCGAAGCTCGCGCTTTCGCTTGGTCTCGCTCAGCAAATGCCTGATATGATTGAAGAGTTGATCAGCAAAGGGCAGCAGCTTGATGCGGTTCACTTTACCTATGAAGTGGGTCTGGTGGAAAAGTTCCCTCCTGTTCCCTTGTTGAAGTCTTTTCTCAAGGATGCTAAGAAAGTTGCGGCTTCTATTTTGGAAGATCCTAATAATGCAGGCCGAGCTGCGTACCTAGCTGCAAGGAAAGAGCAGTCTGCACTCAGGGCTGTGATTAAATGCATTGAAGAATACAAACTTGAGGATGAGTTCCCTCCAGAAAATCTGAAGAAGCGACTTGACCAGTTAGAGAAGGTGAAGACCGAGAAAAGGAAACCAGTGGCAGTTCCTGCCAATAAGAGAACTAGAGCAAGCAACGGCAATGGAGGTCCAATGCCACCAGCCAAAGCTGGGCGTTTGACTAATGCGTATGTATCATCTTTCCCTGCTGCTCCTACATTTGTCAGGTCTCCATCACACGGGCAATACCCAGCTGCTCTTCCACCATACCCTTCCCCACCCCACATGTACGGCAGCAGAAGTCCCCCAGCAAATCCTTATGCTGCTTATTCACCCGAGCCGGCACCAGCTATTGCAGGGTCTTACCCGGCAGCTCCCATGAACTATCCTCATGCATATGGCGGCTATGGAAATGTTTTGGCTCCCACTTATCAGCAGGCTTACTACCGATAG >Glyma20g28440.2 sequence type=CDS gene model=Glyma20g28440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCCATCCCCGATCCAGGCGAGTTGAGCGAGTTGACTCAGCCGAGCTTCGACGAGTTCCAGCGCCAAACCTCTCTCATGACCAGCTGCACCCTCCTCTGGAAGGAGCTCTCCGACCACTTCTCCTCCCTCGAGCAAGACCTCAACCACAAATCCGAAGCCCTCAAGCGCAAGATTCACACCCTCGACAACTCCACCTCGGACTCCCTCCGCCTCCTCGACCACCGCGAAACCTCTCTCGACGCCACTCTCCAGATCGCCCTCCGCACGCTCGACACGCGCCGCACCGCTGCTCTCTCCGCCCTCCTCCACGACGCTGACGACACCTCCCCCGACGGCGAGGTCGATGACACCGCCGGCCTCGTCCTCAAGCTCAAGTCCTTCTGCCTCCGCATGGACGCGTTCGGCTTCTTCGCCTTCGTCAGCGCCAAGAAGAAGGAGCTGGACGGCCTACGCGCCGAGATGCCGGTGGCGCTGGCGGAGTGCGTCGATCCGGCGAAATTCGTGCTGGAGGCGATCTCGGAGGTGTTTCCGGTCGACAAGAGAGGGGAGAAGGCCGGCCACGACTTGGGCTGGGCCTGCGTCCTTGTCCTGGAGTCGTTAATTCCGGTCGTCGTCGACCCCGTCATCGGAAAATCGAGGTTGTTGGTTACCCCTACCGTGAAGGAGCATGCCACGGAGATCGCGGAGACTTGGAAGAGCAGCCTGGAGGATCGTGGCGGCGTGGAAAACCTGAAGACACCTGACGTCCACACTTTCTTGCAGCACGTTGTTACCTTCGGGATTGTCAAGAACGATGACTCCGATTTGTACCGGAAGCTTGTTATTGCTTCCGCTTGGAGGAAACAGATGCCGAAGCTCGCGCTTTCGCTTGGTCTCGCTCAGCAAATGCCTGATATGATTGAAGAGTTGATCAGCAAAGGGCAGCAGCTTGATGCGGTTCACTTTACCTATGAAGTGGGTCTGGTGGAAAAGTTCCCTCCTGTTCCCTTGTTGAAGTCTTTTCTCAAGGATGCTAAGAAAGTTGCGGCTTCTATTTTGGAAGATCCTAATAATGCAGGCCGAGCTGCGGTACTTTTCTCTCTTTTTAATATCTATTTCTATGATTTTCTGTGGTTTTTGGTTTAG
>Glyma20g28440.1 sequence type=predicted peptide gene model=Glyma20g28440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSIPDPGELSELTQPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQDLNHKSEALKRKIHTLDNSTSDSLRLLDHRETSLDATLQIALRTLDTRRTAALSALLHDADDTSPDGEVDDTAGLVLKLKSFCLRMDAFGFFAFVSAKKKELDGLRAEMPVALAECVDPAKFVLEAISEVFPVDKRGEKAGHDLGWACVLVLESLIPVVVDPVIGKSRLLVTPTVKEHATEIAETWKSSLEDRGGVENLKTPDVHTFLQHVVTFGIVKNDDSDLYRKLVIASAWRKQMPKLALSLGLAQQMPDMIEELISKGQQLDAVHFTYEVGLVEKFPPVPLLKSFLKDAKKVAASILEDPNNAGRAAYLAARKEQSALRAVIKCIEEYKLEDEFPPENLKKRLDQLEKVKTEKRKPVAVPANKRTRASNGNGGPMPPAKAGRLTNAYVSSFPAAPTFVRSPSHGQYPAALPPYPSPPHMYGSRSPPANPYAAYSPEPAPAIAGSYPAAPMNYPHAYGGYGNVLAPTYQQAYYR* >Glyma20g28440.2 sequence type=predicted peptide gene model=Glyma20g28440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSIPDPGELSELTQPSFDEFQRQTSLMTSCTLLWKELSDHFSSLEQDLNHKSEALKRKIHTLDNSTSDSLRLLDHRETSLDATLQIALRTLDTRRTAALSALLHDADDTSPDGEVDDTAGLVLKLKSFCLRMDAFGFFAFVSAKKKELDGLRAEMPVALAECVDPAKFVLEAISEVFPVDKRGEKAGHDLGWACVLVLESLIPVVVDPVIGKSRLLVTPTVKEHATEIAETWKSSLEDRGGVENLKTPDVHTFLQHVVTFGIVKNDDSDLYRKLVIASAWRKQMPKLALSLGLAQQMPDMIEELISKGQQLDAVHFTYEVGLVEKFPPVPLLKSFLKDAKKVAASILEDPNNAGRAAVLFSLFNIYFYDFLWFLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
