SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14910 | AT | Annotation by Michelle Graham. TAIR10: HISTIDINE BIOSYNTHESIS 5B | chr4:8528451-8530105 REVERSE LENGTH=272 | SoyBase | E_val: 7.00E-132 | ISS |
| GO:0000105 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histidine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004424 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: imidazoleglycerol-phosphate dehydratase activity | SoyBase | N/A | ISS |
| KOG3143 | KOG | Imidazoleglycerol-phosphate dehydratase | JGI | ISS | |
| PTHR23133 | Panther | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 | JGI | ISS | |
| PTHR23133:SF2 | Panther | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 | JGI | ISS | |
| PF00475 | PFAM | Imidazoleglycerol-phosphate dehydratase | JGI | ISS | |
| UniRef100_C6T988 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T988_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I3T3H2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Imidazoleglycerol-phosphate dehydratase n=1 Tax=Lotus japonicus RepID=I3T3H2_LOTJA | SoyBase | E_val: 6.00E-167 | ISS |
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Glyma20g28420 not represented in the dataset |
Glyma20g28420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g39370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.20g145900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma20g28420.2 sequence type=CDS gene model=Glyma20g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTTTCTGCACCTTCTTCACCCTCTCTTCTAAGATGTCCTTCATCCCTGCTTCTGAATTCTAGGGTTAGGGTTTTCCATACAATACCCAACCCCACACGCCCACCTTTCCAAGCTTCAATCTTTTCACTCAACCAACGCAATCTCACTCCAATGGATCTTCCCAGAAACGTCTCCTCCGCTGCCTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGTCAAAATAAACTTGGATGGTTCTGGGGTGGCTGATAGTAGTACTGGAATTCCCTTCCTCGATCATATGCTTGATCAACTTGCTTCACATGGGCTGTTAGATGTACATGTAAAGGCTACAGGTGACATACATATTGATGATCATCACACAAATGAAGACGTTGCCCTTGCTATTGGAACAGCTTTGCTGCATGCCCTTGGTGATAGGAAGGGTATTAACCGGTTTGGTAACTTCTCTGCTCCTCTTGATGAAGCATTGATACATGTTTCACTGGATTTGTCTGGCCGACCACATCTAAGTTATAATTTGGACATACCCACTCAGAGGGTTGGGACATATGATACTCAGTTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGCTTGCTGGGAAAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTTGCTCGGGCTCTTCGACAAGCAACAGAGTATGATCCACGTCGCCGTGGAACTATACCAAGTTCGAAAGGGGTTCTGTCCCGTAGCTAA
>Glyma20g28420.2 sequence type=predicted peptide gene model=Glyma20g28420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELSAPSSPSLLRCPSSLLLNSRVRVFHTIPNPTRPPFQASIFSLNQRNLTPMDLPRNVSSAALVGDNASATTTLPIDSDARIGEVKRVTKETNVSVKINLDGSGVADSSTGIPFLDHMLDQLASHGLLDVHVKATGDIHIDDHHTNEDVALAIGTALLHALGDRKGINRFGNFSAPLDEALIHVSLDLSGRPHLSYNLDIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIQQLAGKNSHHIIEATFKAFARALRQATEYDPRRRGTIPSSKGVLSRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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