Glyma20g28411 - SoyBase

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Report for Sequence Feature Glyma20g28411

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37333668
stop:	37337445
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28411

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04910	AT	Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 1 \| chr3:1355084-1358057 FORWARD LENGTH=700	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0584	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF38	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7I7D3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: With no lysine kinase n=1 Tax=Medicago truncatula RepID=G7I7D3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DDB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DDB6 related cluster n=1 Tax=unknown RepID=UPI000233DDB6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g28411

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g28411 not represented in the dataset	Glyma20g28411 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28411

Paralog	Evidence	Comments
Glyma10g39390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28411 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g145800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28411

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g28411

Limit To All Plant Sequences

>Glyma20g28411.2   sequence type=transcript   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATTTGCCTTGCTGTATAGCTCACAGAAGAAGAAGAAGTAAAAGGCCTTTATTTATAAATAAAAGAAAAGGAGAGAACAGATAATAAGAAACAAAGCATGAATGGTGCTGCATGTGTTGAGGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCCACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCTAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGTTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTGTATACTTCCTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTGAGACAGTACAGACTTAAACACAGACGGGTGAATATCAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTTCTCTATCTGCACAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATTGGTGATCTGGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGACAATCCCGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAGGGAACTCTTGGAGGACCCTTTTCTCCAAATTGATGATTATGGATTTGACTCAAAAGTTTTGCAGTATCAAAGAGATTGTTATGAAGTAACGCCATTAATTAGACAACCTGTGAATGGAATTTGTATCATTAACAACAACTTAATGAGTGGGGACACTGATAATATTGGTGGTTATGGGCCTGTATCTGAATTGGATTATCATCAAGACGATTTTGAAGCGACTGAAATTGGTCTCTTTGATTGTGAAGAGGACGACAATTTGGCTGAAGTTGACACCACAATCAAAGGTAGAAGAGAAGACGATGGCATCTTTTTGAGACTCAGAATAGCAGATAAGGAAGGTCGAATTAGAAATATCTACTTCCCATTTGACATTGAGACTGATACCGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTCGACATAAATGACCAAGATGTAACAAATTTAGCAAGTATGATAGACAATGAAATTGCAAGATTGGTCCCAGAGTGGAAAACAGGACCCAGAATAGAGGAAAAATCAGAATGTTCAAGTGCAAGTGTCTGCCTCAATTGTGCTGCAAACGGTTCCTTGTTTGATTATGTATCATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTTGAAGAGATAACATACCAAGTTGAAGGGTCTGAAAATAGTGCTAGAGAAGGTGCACTGGATGAATCAAGCCAATCCAATGGCATTCAATATACAGATATCTGGGCTCAGAGAGATGAACCGGATTTATGCCATGAAGAGTTAAAAGAGATGCACTGTGACCAAGCTCATGAGGCATCAAACTCATCAAACATCAAGGAGGATAGAAAAACTGTTAATGTGGATGAACAAAGTGATCTCAATACCAAAAAGTCTTCTTCAAACCCTGCACCAAATTGTGTTTTCTTGGACTATGAAAATGAAATAAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTTAGAGACCAACAACTAGGGCGTAAACCAAAATTTACTAGCATATCTCCTGACCCCGAAAAATTGGAGCATTTGAAAGATGGAATTCTGAGGCTATCAGATACACCCAATTTGAAGATACAAAACAATAAACCACTATTGAGAACTATAGTTTCTGGGAAGCATTTTCATGTTGAATCTGAGAAATGCAACACTTTGGCTGATCAAATGGTTCAAAATGTTGATGAGATTTGTCAGTCTAACAGTCCTGAGCAAATGATCACAGCCAGGGATTTCTTTACAGGAGTATTGCTTCCACACTCACTTCAGAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTCTAGAAACTAGAAACCACCAAAGTTCATAATTTTCTCATCATAAGTGGGCACCAATGTATCTACATTAACTGGTTGCCAGTTTACTTAAATTTAGGGAAAGAAAATCAGAGCCAGAGAGTGATAGGAGTTACTCAAACGACCCTAGATGTAATTAGCTTGTGGGCACCCTTTTCTAGTAAGGTCACTTGACCTAGTATGAAAAATGCCATATGCAAATCATGCACAGGCTAACGCAATCACATTAATGTAAGCAAAGTTTTCCCTTGAGATGCTGAATTTCAGCTCCATCTCCTAGAGGATTATATATTACAGATCATATGAGATGCTATATTAGAAAAACCTGTGAGACTTCTCTATGATAGAAGTTTTTATCCATTTATCTTTTGTTAACCTTTCTCACTAGCATAATGTAATGGGTAATGAGGCAACTATGTAATGCTAGAAATGGGAGAAATCATTGTATAATTTAGATCATCAAATATTTATGATC

Coding sequences of Glyma20g28411

Limit To All Plant Sequences

>Glyma20g28411.1   sequence type=CDS   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGTGCTGCATGTGTTGAGGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCCACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCTAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGTTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTGTATACTTCCTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTGAGACAGTACAGACTTAAACACAGACGGGTGAATATCAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTTCTCTATCTGCACAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATTGGTGATCTGGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGACAATCCCGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAGGGAACTCTTGGAGGACCCTTTTCTCCAAATTGATGATTATGGATTTGACTCAAAAGTTTTGCAGTATCAAAGAGATTGTTATGAAGTAACGCCATTAATTAGACAACCTGTGAATGGAATTTGTATCATTAACAACAACTTAATGAGTGGGGACACTGATAATATTGGTGGTTATGGGCCTGTATCTGAATTGGATTATCATCAAGACGATTTTGAAGCGACTGAAATTGGTCTCTTTGATTGTGAAGAGGACGACAATTTGGCTGAAGTTGACACCACAATCAAAGGTAGAAGAGAAGACGATGGCATCTTTTTGAGACTCAGAATAGCAGATAAGGAAGGTCGAATTAGAAATATCTACTTCCCATTTGACATTGAGACTGATACCGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTCGACATAAATGACCAAGATGTAACAAATTTAGCAAGTATGATAGACAATGAAATTGCAAGATTGGTCCCAGAGTGGAAAACAGGACCCAGAATAGAGGAAAAATCAGAATGTTCAAGTGCAAGTGTCTGCCTCAATTGTGCTGCAAACGGTTCCTTGTTTGATTATGTATCATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTTGAAGAGATAACATACCAAGTTGAAGGGTCTGAAAATAGTGCTAGAGAAGGTGCACTGGATGAATCAAGCCAATCCAATGGCATTCAATATACAGATATCTGGGCTCAGAGAGATGAACCGGATTTATGCCATGAAGAGTTAAAAGAGATGCACTGTGACCAAGCTCATGAGGCATCAAACTCATCAAACATCAAGGAGGATAGAAAAACTGTTAATGTGGATGAACAAAGTGATCTCAATACCAAAAAGTCTTCTTCAAACCCTGCACCAAATTGTGTTTTCTTGGACTATGAAAATGAAATAAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTTAGAGACCAACAACTAGGGCGTAAACCAAAATTTACTAGCATATCTCCTGACCCCGAAAAATTGGAGCATTTGAAAGATGGAATTCTGAGGCTATCAGATACACCCAATTTGAAGATACAAAACAATAAACCACTATTGAGAACTATAGTTTCTGGGAAGCATTTTCATGTTGAATCTGAGAAATGCAACACTTTGGCTGATCAAATGGTTCAAAATGTTGATGAGATTTGTCAGTCTAACAGTCCTGAGCAAATGATCACAGCCAGGGATTTCTTTACAGGAGTATTGCTTCCACACTCACTTCAGAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTCTAG

>Glyma20g28411.2   sequence type=CDS   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGTGCTGCATGTGTTGAGGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCCACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCTAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGTTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTGTATACTTCCTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTGAGACAGTACAGACTTAAACACAGACGGGTGAATATCAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTTCTCTATCTGCACAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATTGGTGATCTGGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGACAATCCCGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAGGGAACTCTTGGAGGACCCTTTTCTCCAAATTGATGATTATGGATTTGACTCAAAAGTTTTGCAGTATCAAAGAGATTGTTATGAAGTAACGCCATTAATTAGACAACCTGTGAATGGAATTTGTATCATTAACAACAACTTAATGAGTGGGGACACTGATAATATTGGTGGTTATGGGCCTGTATCTGAATTGGATTATCATCAAGACGATTTTGAAGCGACTGAAATTGGTCTCTTTGATTGTGAAGAGGACGACAATTTGGCTGAAGTTGACACCACAATCAAAGGTAGAAGAGAAGACGATGGCATCTTTTTGAGACTCAGAATAGCAGATAAGGAAGGTCGAATTAGAAATATCTACTTCCCATTTGACATTGAGACTGATACCGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTCGACATAAATGACCAAGATGTAACAAATTTAGCAAGTATGATAGACAATGAAATTGCAAGATTGGTCCCAGAGTGGAAAACAGGACCCAGAATAGAGGAAAAATCAGAATGTTCAAGTGCAAGTGTCTGCCTCAATTGTGCTGCAAACGGTTCCTTGTTTGATTATGTATCATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTTGAAGAGATAACATACCAAGTTGAAGGGTCTGAAAATAGTGCTAGAGAAGGTGCACTGGATGAATCAAGCCAATCCAATGGCATTCAATATACAGATATCTGGGCTCAGAGAGATGAACCGGATTTATGCCATGAAGAGTTAAAAGAGATGCACTGTGACCAAGCTCATGAGGCATCAAACTCATCAAACATCAAGGAGGATAGAAAAACTGTTAATGTGGATGAACAAAGTGATCTCAATACCAAAAAGTCTTCTTCAAACCCTGCACCAAATTGTGTTTTCTTGGACTATGAAAATGAAATAAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTTAGAGACCAACAACTAGGGCGTAAACCAAAATTTACTAGCATATCTCCTGACCCCGAAAAATTGGAGCATTTGAAAGATGGAATTCTGAGGCTATCAGATACACCCAATTTGAAGATACAAAACAATAAACCACTATTGAGAACTATAGTTTCTGGGAAGCATTTTCATGTTGAATCTGAGAAATGCAACACTTTGGCTGATCAAATGGTTCAAAATGTTGATGAGATTTGTCAGTCTAACAGTCCTGAGCAAATGATCACAGCCAGGGATTTCTTTACAGGAGTATTGCTTCCACACTCACTTCAGAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTCTAG

Predicted protein sequences of Glyma20g28411

Limit To All Plant Sequences

>Glyma20g28411.1   sequence type=predicted peptide   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGAACVEAECCEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKFYDFLQNPEDLERLYSEIHLLKTLKHKNIMKLYTSWVDTANRHINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVDNPEVRQFVEKCLATVSLRLSARELLEDPFLQIDDYGFDSKVLQYQRDCYEVTPLIRQPVNGICIINNNLMSGDTDNIGGYGPVSELDYHQDDFEATEIGLFDCEEDDNLAEVDTTIKGRREDDGIFLRLRIADKEGRIRNIYFPFDIETDTALSVANEMVAELDINDQDVTNLASMIDNEIARLVPEWKTGPRIEEKSECSSASVCLNCAANGSLFDYVSSNNPCGKNLQFLHCSKTGCAAVHGRFEEITYQVEGSENSAREGALDESSQSNGIQYTDIWAQRDEPDLCHEELKEMHCDQAHEASNSSNIKEDRKTVNVDEQSDLNTKKSSSNPAPNCVFLDYENEIRQELRWLKAKYQMQLRELRDQQLGRKPKFTSISPDPEKLEHLKDGILRLSDTPNLKIQNNKPLLRTIVSGKHFHVESEKCNTLADQMVQNVDEICQSNSPEQMITARDFFTGVLLPHSLQRATSLPVDAVDV*

>Glyma20g28411.2   sequence type=predicted peptide   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGAACVEAECCEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKFYDFLQNPEDLERLYSEIHLLKTLKHKNIMKLYTSWVDTANRHINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVDNPEVRQFVEKCLATVSLRLSARELLEDPFLQIDDYGFDSKVLQYQRDCYEVTPLIRQPVNGICIINNNLMSGDTDNIGGYGPVSELDYHQDDFEATEIGLFDCEEDDNLAEVDTTIKGRREDDGIFLRLRIADKEGRIRNIYFPFDIETDTALSVANEMVAELDINDQDVTNLASMIDNEIARLVPEWKTGPRIEEKSECSSASVCLNCAANGSLFDYVSSNNPCGKNLQFLHCSKTGCAAVHGRFEEITYQVEGSENSAREGALDESSQSNGIQYTDIWAQRDEPDLCHEELKEMHCDQAHEASNSSNIKEDRKTVNVDEQSDLNTKKSSSNPAPNCVFLDYENEIRQELRWLKAKYQMQLRELRDQQLGRKPKFTSISPDPEKLEHLKDGILRLSDTPNLKIQNNKPLLRTIVSGKHFHVESEKCNTLADQMVQNVDEICQSNSPEQMITARDFFTGVLLPHSLQRATSLPVDAVDV*

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