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Report for Sequence Feature Glyma20g28411

Feature Type:gene_model
Chromosome:Gm20
Start:37333668
stop:37337445
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g28411
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G04910AT Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 1 | chr3:1355084-1358057 FORWARD LENGTH=700 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0584 KOG Serine/threonine protein kinase JGI ISS
PTHR13902Panther SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED JGI ISS
PTHR13902:SF38Panther SUBFAMILY NOT NAMED JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7I7D3UniRef Annotation by Michelle Graham. Most informative UniRef hit: With no lysine kinase n=1 Tax=Medicago truncatula RepID=G7I7D3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233DDB6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DDB6 related cluster n=1 Tax=unknown RepID=UPI000233DDB6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g28411
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma20g28411 not represented in the dataset
Glyma20g28411 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28411
ParalogEvidenceComments
Glyma10g39390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28411 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g145800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g28411
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma20g28411
>Glyma20g28411.2   sequence type=transcript   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAATTTGCCTTGCTGTATAGCTCACAGAAGAAGAAGAAGTAAAAGGCCTTTATTTATAAATAAAAGAAAAGGAGAGAACAGATAATAAGAAACAAAGCATGAATGGTGCTGCATGTGTTGAGGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCCACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCTAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGTTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTGTATACTTCCTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTGAGACAGTACAGACTTAAACACAGACGGGTGAATATCAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTTCTCTATCTGCACAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATTGGTGATCTGGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGACAATCCCGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAGGGAACTCTTGGAGGACCCTTTTCTCCAAATTGATGATTATGGATTTGACTCAAAAGTTTTGCAGTATCAAAGAGATTGTTATGAAGTAACGCCATTAATTAGACAACCTGTGAATGGAATTTGTATCATTAACAACAACTTAATGAGTGGGGACACTGATAATATTGGTGGTTATGGGCCTGTATCTGAATTGGATTATCATCAAGACGATTTTGAAGCGACTGAAATTGGTCTCTTTGATTGTGAAGAGGACGACAATTTGGCTGAAGTTGACACCACAATCAAAGGTAGAAGAGAAGACGATGGCATCTTTTTGAGACTCAGAATAGCAGATAAGGAAGGTCGAATTAGAAATATCTACTTCCCATTTGACATTGAGACTGATACCGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTCGACATAAATGACCAAGATGTAACAAATTTAGCAAGTATGATAGACAATGAAATTGCAAGATTGGTCCCAGAGTGGAAAACAGGACCCAGAATAGAGGAAAAATCAGAATGTTCAAGTGCAAGTGTCTGCCTCAATTGTGCTGCAAACGGTTCCTTGTTTGATTATGTATCATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTTGAAGAGATAACATACCAAGTTGAAGGGTCTGAAAATAGTGCTAGAGAAGGTGCACTGGATGAATCAAGCCAATCCAATGGCATTCAATATACAGATATCTGGGCTCAGAGAGATGAACCGGATTTATGCCATGAAGAGTTAAAAGAGATGCACTGTGACCAAGCTCATGAGGCATCAAACTCATCAAACATCAAGGAGGATAGAAAAACTGTTAATGTGGATGAACAAAGTGATCTCAATACCAAAAAGTCTTCTTCAAACCCTGCACCAAATTGTGTTTTCTTGGACTATGAAAATGAAATAAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTTAGAGACCAACAACTAGGGCGTAAACCAAAATTTACTAGCATATCTCCTGACCCCGAAAAATTGGAGCATTTGAAAGATGGAATTCTGAGGCTATCAGATACACCCAATTTGAAGATACAAAACAATAAACCACTATTGAGAACTATAGTTTCTGGGAAGCATTTTCATGTTGAATCTGAGAAATGCAACACTTTGGCTGATCAAATGGTTCAAAATGTTGATGAGATTTGTCAGTCTAACAGTCCTGAGCAAATGATCACAGCCAGGGATTTCTTTACAGGAGTATTGCTTCCACACTCACTTCAGAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTCTAGAAACTAGAAACCACCAAAGTTCATAATTTTCTCATCATAAGTGGGCACCAATGTATCTACATTAACTGGTTGCCAGTTTACTTAAATTTAGGGAAAGAAAATCAGAGCCAGAGAGTGATAGGAGTTACTCAAACGACCCTAGATGTAATTAGCTTGTGGGCACCCTTTTCTAGTAAGGTCACTTGACCTAGTATGAAAAATGCCATATGCAAATCATGCACAGGCTAACGCAATCACATTAATGTAAGCAAAGTTTTCCCTTGAGATGCTGAATTTCAGCTCCATCTCCTAGAGGATTATATATTACAGATCATATGAGATGCTATATTAGAAAAACCTGTGAGACTTCTCTATGATAGAAGTTTTTATCCATTTATCTTTTGTTAACCTTTCTCACTAGCATAATGTAATGGGTAATGAGGCAACTATGTAATGCTAGAAATGGGAGAAATCATTGTATAATTTAGATCATCAAATATTTATGATC
Coding sequences of Glyma20g28411
>Glyma20g28411.1   sequence type=CDS   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGTGCTGCATGTGTTGAGGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCCACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCTAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGTTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTGTATACTTCCTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTGAGACAGTACAGACTTAAACACAGACGGGTGAATATCAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTTCTCTATCTGCACAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATTGGTGATCTGGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGACAATCCCGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAGGGAACTCTTGGAGGACCCTTTTCTCCAAATTGATGATTATGGATTTGACTCAAAAGTTTTGCAGTATCAAAGAGATTGTTATGAAGTAACGCCATTAATTAGACAACCTGTGAATGGAATTTGTATCATTAACAACAACTTAATGAGTGGGGACACTGATAATATTGGTGGTTATGGGCCTGTATCTGAATTGGATTATCATCAAGACGATTTTGAAGCGACTGAAATTGGTCTCTTTGATTGTGAAGAGGACGACAATTTGGCTGAAGTTGACACCACAATCAAAGGTAGAAGAGAAGACGATGGCATCTTTTTGAGACTCAGAATAGCAGATAAGGAAGGTCGAATTAGAAATATCTACTTCCCATTTGACATTGAGACTGATACCGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTCGACATAAATGACCAAGATGTAACAAATTTAGCAAGTATGATAGACAATGAAATTGCAAGATTGGTCCCAGAGTGGAAAACAGGACCCAGAATAGAGGAAAAATCAGAATGTTCAAGTGCAAGTGTCTGCCTCAATTGTGCTGCAAACGGTTCCTTGTTTGATTATGTATCATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTTGAAGAGATAACATACCAAGTTGAAGGGTCTGAAAATAGTGCTAGAGAAGGTGCACTGGATGAATCAAGCCAATCCAATGGCATTCAATATACAGATATCTGGGCTCAGAGAGATGAACCGGATTTATGCCATGAAGAGTTAAAAGAGATGCACTGTGACCAAGCTCATGAGGCATCAAACTCATCAAACATCAAGGAGGATAGAAAAACTGTTAATGTGGATGAACAAAGTGATCTCAATACCAAAAAGTCTTCTTCAAACCCTGCACCAAATTGTGTTTTCTTGGACTATGAAAATGAAATAAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTTAGAGACCAACAACTAGGGCGTAAACCAAAATTTACTAGCATATCTCCTGACCCCGAAAAATTGGAGCATTTGAAAGATGGAATTCTGAGGCTATCAGATACACCCAATTTGAAGATACAAAACAATAAACCACTATTGAGAACTATAGTTTCTGGGAAGCATTTTCATGTTGAATCTGAGAAATGCAACACTTTGGCTGATCAAATGGTTCAAAATGTTGATGAGATTTGTCAGTCTAACAGTCCTGAGCAAATGATCACAGCCAGGGATTTCTTTACAGGAGTATTGCTTCCACACTCACTTCAGAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTCTAG

>Glyma20g28411.2   sequence type=CDS   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGTGCTGCATGTGTTGAGGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCCACGGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCTAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGTTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTGTATACTTCCTGGGTTGATACTGCCAACAGACACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTGAGACAGTACAGACTTAAACACAGACGGGTGAATATCAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTTCTCTATCTGCACAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATTGGTGATCTGGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGACAATCCCGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAGGGAACTCTTGGAGGACCCTTTTCTCCAAATTGATGATTATGGATTTGACTCAAAAGTTTTGCAGTATCAAAGAGATTGTTATGAAGTAACGCCATTAATTAGACAACCTGTGAATGGAATTTGTATCATTAACAACAACTTAATGAGTGGGGACACTGATAATATTGGTGGTTATGGGCCTGTATCTGAATTGGATTATCATCAAGACGATTTTGAAGCGACTGAAATTGGTCTCTTTGATTGTGAAGAGGACGACAATTTGGCTGAAGTTGACACCACAATCAAAGGTAGAAGAGAAGACGATGGCATCTTTTTGAGACTCAGAATAGCAGATAAGGAAGGTCGAATTAGAAATATCTACTTCCCATTTGACATTGAGACTGATACCGCATTGAGTGTTGCAAATGAAATGGTAGCTGAGCTCGACATAAATGACCAAGATGTAACAAATTTAGCAAGTATGATAGACAATGAAATTGCAAGATTGGTCCCAGAGTGGAAAACAGGACCCAGAATAGAGGAAAAATCAGAATGTTCAAGTGCAAGTGTCTGCCTCAATTGTGCTGCAAACGGTTCCTTGTTTGATTATGTATCATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTTGAAGAGATAACATACCAAGTTGAAGGGTCTGAAAATAGTGCTAGAGAAGGTGCACTGGATGAATCAAGCCAATCCAATGGCATTCAATATACAGATATCTGGGCTCAGAGAGATGAACCGGATTTATGCCATGAAGAGTTAAAAGAGATGCACTGTGACCAAGCTCATGAGGCATCAAACTCATCAAACATCAAGGAGGATAGAAAAACTGTTAATGTGGATGAACAAAGTGATCTCAATACCAAAAAGTCTTCTTCAAACCCTGCACCAAATTGTGTTTTCTTGGACTATGAAAATGAAATAAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAAATGCAGTTAAGGGAGCTTAGAGACCAACAACTAGGGCGTAAACCAAAATTTACTAGCATATCTCCTGACCCCGAAAAATTGGAGCATTTGAAAGATGGAATTCTGAGGCTATCAGATACACCCAATTTGAAGATACAAAACAATAAACCACTATTGAGAACTATAGTTTCTGGGAAGCATTTTCATGTTGAATCTGAGAAATGCAACACTTTGGCTGATCAAATGGTTCAAAATGTTGATGAGATTTGTCAGTCTAACAGTCCTGAGCAAATGATCACAGCCAGGGATTTCTTTACAGGAGTATTGCTTCCACACTCACTTCAGAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTCTAG
Predicted protein sequences of Glyma20g28411
>Glyma20g28411.1   sequence type=predicted peptide   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGAACVEAECCEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKFYDFLQNPEDLERLYSEIHLLKTLKHKNIMKLYTSWVDTANRHINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVDNPEVRQFVEKCLATVSLRLSARELLEDPFLQIDDYGFDSKVLQYQRDCYEVTPLIRQPVNGICIINNNLMSGDTDNIGGYGPVSELDYHQDDFEATEIGLFDCEEDDNLAEVDTTIKGRREDDGIFLRLRIADKEGRIRNIYFPFDIETDTALSVANEMVAELDINDQDVTNLASMIDNEIARLVPEWKTGPRIEEKSECSSASVCLNCAANGSLFDYVSSNNPCGKNLQFLHCSKTGCAAVHGRFEEITYQVEGSENSAREGALDESSQSNGIQYTDIWAQRDEPDLCHEELKEMHCDQAHEASNSSNIKEDRKTVNVDEQSDLNTKKSSSNPAPNCVFLDYENEIRQELRWLKAKYQMQLRELRDQQLGRKPKFTSISPDPEKLEHLKDGILRLSDTPNLKIQNNKPLLRTIVSGKHFHVESEKCNTLADQMVQNVDEICQSNSPEQMITARDFFTGVLLPHSLQRATSLPVDAVDV*

>Glyma20g28411.2   sequence type=predicted peptide   gene model=Glyma20g28411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGAACVEAECCEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKFYDFLQNPEDLERLYSEIHLLKTLKHKNIMKLYTSWVDTANRHINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVDNPEVRQFVEKCLATVSLRLSARELLEDPFLQIDDYGFDSKVLQYQRDCYEVTPLIRQPVNGICIINNNLMSGDTDNIGGYGPVSELDYHQDDFEATEIGLFDCEEDDNLAEVDTTIKGRREDDGIFLRLRIADKEGRIRNIYFPFDIETDTALSVANEMVAELDINDQDVTNLASMIDNEIARLVPEWKTGPRIEEKSECSSASVCLNCAANGSLFDYVSSNNPCGKNLQFLHCSKTGCAAVHGRFEEITYQVEGSENSAREGALDESSQSNGIQYTDIWAQRDEPDLCHEELKEMHCDQAHEASNSSNIKEDRKTVNVDEQSDLNTKKSSSNPAPNCVFLDYENEIRQELRWLKAKYQMQLRELRDQQLGRKPKFTSISPDPEKLEHLKDGILRLSDTPNLKIQNNKPLLRTIVSGKHFHVESEKCNTLADQMVQNVDEICQSNSPEQMITARDFFTGVLLPHSLQRATSLPVDAVDV*






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