Glyma20g28320 - SoyBase

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Report for Sequence Feature Glyma20g28320

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37238496
stop:	37240635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G32150	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr2:13659095-13660531 FORWARD LENGTH=263	SoyBase	E_val: 1.00E-106	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3109	KOG	Haloacid dehalogenase-like hydrolase	JGI		ISS
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI		ISS
PTHR12725:SF15	Panther	PREDICTED PROTEIN (FRAGMENT)	JGI		ISS
PTHR18901	Panther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_B7FKK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphate metabolism protein n=1 Tax=Medicago truncatula RepID=B7FKK9_MEDTR	SoyBase	E_val: 8.00E-131	ISS
UniRef100_I1NGD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGD4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g28320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28320

Paralog	Evidence	Comments
Glyma10g39451	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g144800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g28320

Limit To All Plant Sequences

>Glyma20g28320.2   sequence type=transcript   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCATCTCCTCTCTATAAATTCCCCTCCAATCCCTTCATTCGAAGCTCGCTTCCTCTTTCTAACTTGCCATACCATCTTACTTTTACTTTGTTTTCACAACATAGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGAAAAGTGTTTGGATGTGGAGGAGGATAAGGCCTGACGTTGTACAATGTACATTCCCAAACCAACCCAACTATCTAAGCAATTAAAATAATAGCAGCAAGTACTATCAGAACACCAACAACCAAGACAATAACAATAAGTAACATGGGCCCCTAAGCAATTATTTGCGACATCATGTTAATCATGTCAATATTGTAAGATATTTAGTAGTATTATTTGTACGTATTATCAATCGTCTTACAAATAAAATCAAATTGTCTCTCAGAGATATCAATTGCTTAACAATTAATAAAGTTGAGTTACTGTCATTATTTTGATTATCTTTCTCTATGATCCGTTCGGTTGGAAAAAAAAATTATGATTTTAATTGAAAAAAAATGTTGAAGGAAATTTCTAGAAGTCA

>Glyma20g28320.3   sequence type=transcript   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCATCTCCTCTCTATAAATTCCCCTCCAATCCCTTCATTCGAAGCTCGCTTCCTCTTTCTAACTTGCCATACCATCTTACTTTTACTTTGTTTTCACAACATAGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTAATTTCCTAGACGACCTAATAATTATTATTTAAGTTGGTTTAGTTAGCATAATATTCAATATTATCATGAGTGGTTTCTTTGGGATTGTTATAGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGAAAAGTGTTTGGATGTGGAGGAGGATAAGGCCTGACGTTGTACAATGTACATTCCCAAACCAACCCAACTATCTAAGCAATTAAAATAATAGCAGCAAGTACTATCAGAACACCAACAACCAAGACAATAACAATAAGTAACATGGGCCCCTAAGCAATTATTTGCGACATCATGTTAATCATGTCAATATTGTAAGATATTTAGTAGTATTATTTGTACGTATTATCAATCGTCTTACAAATAAAATCAAATTGTCTCTCAGAGATATCAATTGCTTAACAATTAATAAAGTTGAGTTACTGTCATTATTTTGATTATCTTTCTCTATGATCCGTTCGGTTGGAAAAAAAAATTATGATTTTAATTGAAAAAAAATGTTGAAGGAAATTTCTAGAAGTCA

>Glyma20g28320.4   sequence type=transcript   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCATCTCCTCTCTATAAATTCCCCTCCAATCCCTTCATTCGAAGCTCGCTTCCTCTTTCTAACTTGCCATACCATCTTACTTTTACTTTGTTTTCACAACATAGCCATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGGTAAGACAAGACGACCAAGTCAACAACCTCAACCTATACGGCCATTGATTTGAATGAAACTAAACTTCATCCAAGAAAAAATACACTCAAATCTAAGTGTGTTAGATAAAACTTTGAATTCAAATTATATAAATAGAAAAAACGTGATT

Coding sequences of Glyma20g28320

Limit To All Plant Sequences

>Glyma20g28320.1   sequence type=CDS   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGTCAGTAATAATAACACATCAATCAATGTCTTATTACAAGCTCTAACACACCAATATCCCCATCTCAACTCTGTTTCCTTCTTCGTTACTTTGCAGGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGA

>Glyma20g28320.2   sequence type=CDS   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAGAGAAAAGCAAAGGAGCAGACTATGCAGTGGAGTGTGTGAATGACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGAGGATCAAACGATGACACGTACCAAGAGTGAATTGGAGGCCGTACTCGCGTGTGCTGTGGTTGGAGCTTGA

>Glyma20g28320.3   sequence type=CDS   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGTTATTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTAATTTCCTAG

>Glyma20g28320.4   sequence type=CDS   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCATCTCCAGCAACGCTTCTCCTTTTGATTCCATCATCTTCGATTTGGACGACACCTTGTACCCGTCAAGCACCGGTATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCGAAGCCTTCACCCTCCGAGTTGATCTCTTCAAAACCTACGGAAGCACCCTTGCCGGTTTAAGAGCACTAGGCCATGATATCACCGCAGAGGAGTACCATGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCAACCCTGATCATCACTTACGGAACCTTCTCTGCACCATCAAACAGAGAAAAATTGTTTTTACTAATTCGGACAGGATTCACGCGATGAGGTCGTTGGATAGACTTGGGATCAAGGACTGTTTCGAGCAAATCATATGTTTCGAGACTATAAACCCGAACCTTCCATATTCCACCCGACCCGATGAATTCCTCATCCTCCTTAAACCGTCTCTCGACGCCTTCAAGATCGCCCTTGACGCTGCCAACGTGGATCCTCGTCGTACGGTAAGACAAGACGACCAAGTCAACAACCTCAACCTATACGGCCATTGA

Predicted protein sequences of Glyma20g28320

Limit To All Plant Sequences

>Glyma20g28320.1   sequence type=predicted peptide   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRVSNNNTSINVLLQALTHQYPHLNSVSFFVTLQALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTLFLDDSVRNIAAGKEMGLHTVLVGKTEKSKGADYAVECVNDLAQVIPEIWANEMDGEDQTMTRTKSELEAVLACAVVGA*

>Glyma20g28320.2   sequence type=predicted peptide   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTLFLDDSVRNIAAGKEMGLHTVLVGKTEKSKGADYAVECVNDLAQVIPEIWANEMDGEDQTMTRTKSELEAVLACAVVGA*

>Glyma20g28320.3   sequence type=predicted peptide   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTLFLDDSVRNIAAGKEMGLHTVLVIS*

>Glyma20g28320.4   sequence type=predicted peptide   gene model=Glyma20g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISSNASPFDSIIFDLDDTLYPSSTGIDKCVKKNIQLFLIQKCGFSESEAFTLRVDLFKTYGSTLAGLRALGHDITAEEYHGFVHGRLPYDSINPDHHLRNLLCTIKQRKIVFTNSDRIHAMRSLDRLGIKDCFEQIICFETINPNLPYSTRPDEFLILLKPSLDAFKIALDAANVDPRRTVRQDDQVNNLNLYGH*

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