Glyma20g28300 - SoyBase

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Report for Sequence Feature Glyma20g28300

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37232956
stop:	37234015
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03130	AT	Annotation by Michelle Graham. TAIR10: photosystem I subunit D-2 \| chr1:753528-754142 REVERSE LENGTH=204	SoyBase	E_val: 3.00E-103	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009522	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009538	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: photosystem I reaction center	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02531	PFAM	PsaD	JGI		ISS
UniRef100_A5Z2K3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I subunit PsaD n=2 Tax=Papilionoideae RepID=A5Z2K3_SOYBN	SoyBase	E_val: 5.00E-131	ISS
UniRef100_I1NGD2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1NGD2_SOYBN	SoyBase	E_val: 2.33E-156	ISS

Expression Patterns of Glyma20g28300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28300

Paralog	Evidence	Comments
Glyma10g39460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g144700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g28300

Limit To All Plant Sequences

>Glyma20g28300.2   sequence type=transcript   gene model=Glyma20g28300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGGTCGAAGCGATATCACCTTATCCAAATCCAAATCCAAATCCACACCATCCATCCAAAATCTCCTCCAGCCTACTACTTTACTCTGTTTCCTTTTGTTTCTTATTGATCTCTGACAACCCCAACACTTCCGAACCTTGCATTGTATCTACCCACTTCTCAACCAACAATGGCAATGGCAACCCAAGCCTCTCTCTTCACCCCACCCCTCTCCGGTCTCAAACCCAGCGACCGAGCCACCGCGCCATGGAAACAATCCTCCACCCTCTCCTTCTCCACCTCGAAGCCCCTCAAGTTCTCGCGAACAATCAGAGCAGCACCGGCGGGCTCCTGCGCAAGGCCCAAGTGGAGGAGTTTTATGTCATCACATGGGACTCCCCGAAAGAACAGATCTTTGAAATGCCCACTGGCGGCGCTGCCATCATGAGGGAGGGTCCCAACCTTCTCAAGTTGGCGAGGAAGGAGCAGTGCTTGGCTCTTGGGACTAGGCTCAGGTCAAAGTACAAGATCAAGTACCAGTTTTACAGGGTCTTCCCCAATGGGGAGGTTCAGTATTTGCACCCCAAGGATGGTGTGTACCCTGAGAAGGTCAACGCCGGACGCCAAGGGGTTGGTCAGAACTTCAGGTCTATTGGTAAGAATGTTAGTCCTATTGAGGTCAAGTTCACTGGCAAGCAACCCTATGATTTGTGAGCAACTCTATCATCATTCCCCCATGCTTCTTCCATTCGTTTATATGCTATATTGTCATCTCATGTCATGCCAGGAATGCTATAACTCTTTACCTTAATTTTACACTTCTTTTTCGCTAGCTATTTGGTGATTGTTTATTATTTGCGCCAACTGCATGTTTTGGATCAATATTCATTTCCTGAAATTAATCCATCCAACTTATGCTAGAGTAGCAATACCGAAACCAAACGCGGATACGTTGCGTGAAGAGTGAAAGTTTGCTGAAGTGAGAATTTTGTG

Coding sequences of Glyma20g28300

Limit To All Plant Sequences

>Glyma20g28300.1   sequence type=CDS   gene model=Glyma20g28300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGGCAACCCAAGCCTCTCTCTTCACCCCACCCCTCTCCGGTCTCAAACCCAGCGACCGAGCCACCGCGCCATGGAAACAATCCTCCACCCTCTCCTTCTCCACCTCGAAGCCCCTCAAGTTCTCGCGAACAATCAGAGCAGCAGCCACCGACCAGACCACAGAGGCACCGGTTGGGTTCACCCCACCGGAACTGGACCCAAACACCCCTTCCCCGATCTTCGGAGGCAGCACCGGCGGGCTCCTGCGCAAGGCCCAAGTGGAGGAGTTTTATGTCATCACATGGGACTCCCCGAAAGAACAGATCTTTGAAATGCCCACTGGCGGCGCTGCCATCATGAGGGAGGGTCCCAACCTTCTCAAGTTGGCGAGGAAGGAGCAGTGCTTGGCTCTTGGGACTAGGCTCAGGTCAAAGTACAAGATCAAGTACCAGTTTTACAGGGTCTTCCCCAATGGGGAGGTTCAGTATTTGCACCCCAAGGATGGTGTGTACCCTGAGAAGGTCAACGCCGGACGCCAAGGGGTTGGTCAGAACTTCAGGTCTATTGGTAAGAATGTTAGTCCTATTGAGGTCAAGTTCACTGGCAAGCAACCCTATGATTTGTGA

>Glyma20g28300.2   sequence type=CDS   gene model=Glyma20g28300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACAATCCTCCACCCTCTCCTTCTCCACCTCGAAGCCCCTCAAGTTCTCGCGAACAATCAGAGCAGCACCGGCGGGCTCCTGCGCAAGGCCCAAGTGGAGGAGTTTTATGTCATCACATGGGACTCCCCGAAAGAACAGATCTTTGAAATGCCCACTGGCGGCGCTGCCATCATGAGGGAGGGTCCCAACCTTCTCAAGTTGGCGAGGAAGGAGCAGTGCTTGGCTCTTGGGACTAGGCTCAGGTCAAAGTACAAGATCAAGTACCAGTTTTACAGGGTCTTCCCCAATGGGGAGGTTCAGTATTTGCACCCCAAGGATGGTGTGTACCCTGAGAAGGTCAACGCCGGACGCCAAGGGGTTGGTCAGAACTTCAGGTCTATTGGTAAGAATGTTAGTCCTATTGAGGTCAAGTTCACTGGCAAGCAACCCTATGATTTGTGA

Predicted protein sequences of Glyma20g28300

Limit To All Plant Sequences

>Glyma20g28300.1   sequence type=predicted peptide   gene model=Glyma20g28300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMATQASLFTPPLSGLKPSDRATAPWKQSSTLSFSTSKPLKFSRTIRAAATDQTTEAPVGFTPPELDPNTPSPIFGGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDL*

>Glyma20g28300.2   sequence type=predicted peptide   gene model=Glyma20g28300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METILHPLLLHLEAPQVLANNQSSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNAGRQGVGQNFRSIGKNVSPIEVKFTGKQPYDL*

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