Glyma20g28260 - SoyBase

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Report for Sequence Feature Glyma20g28260

Feature Type:	gene_model
Chromosome:	Gm20
Start:	37193300
stop:	37201196
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g28260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22380	AT	Annotation by Michelle Graham. TAIR10: time for coffee \| chr3:7913181-7918879 FORWARD LENGTH=1550	SoyBase	E_val: 0	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7ID76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TIME FOR COFFEE n=1 Tax=Medicago truncatula RepID=G7ID76_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NGC8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGC8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g28260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g28260

Paralog	Evidence	Comments
Glyma10g39491	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g28260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g144400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g28260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma20g28260

Limit To All Plant Sequences

>Glyma20g28260.3   sequence type=CDS   gene model=Glyma20g28260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGGATTAGAGAAGCCAGAAGAAGCACTATGGCCGCAAATGGATTAACCAGACGAAGACACAGGACTAACAACAGTCTTAGAGACTCACCAGAGGAAGATGGAGCCATGGAGCTGCAAGAACCATCCAGGTTGCGAGATCGAGGAGGTAGTGGGAAAAAGGATCGAGATCGTGAAAGGGAGAGGGAAAGGGAGAGAGATCGATTGGGTCGAAGCAAGAAGAGAAGAGGAGATAGGTTGATGCATAGCAGCAGAGAAGATGGCGGAGAAGACACTTCTGAAGAGAGTATCAACGATGAGGACGACGACGACGATGAAGACGGTGGCGGCGGCGGCAGCGGCAGCGGTAGCGCTTCAGTGAGAATGCTTCCGCTGAACCCCTCTTCGCTCTCCAACCAGCATCATCGGAAGAGCTTCCCTCCGGCGAAAGTTTTAAGACCAACGCCGCCGACGACGTGGAAGGCCGCCGATGAGATGATCGGAGTATCCGTCCCTAGGAAAGCACGCTCGGCCTCTACGAAGAGGTCGCACGAATGCTGGGCTTCGAGCGGTGGCGGTATCGTGGCGGAACAAAATCACCGACAGCCGTCGACCTCCCCGGTGAGGGCGGCTGCGCCGGCCTCGCCTTCGTCGTCGAACGCCTCTGTTAGGAAGAAGATAAAGCAGAATGGCGGAGCCAAGTTTCGACCACCCAAAACGACGACGTCGTCGTCGTCCAAGCCGTCGTCTTCAGCGCAGGACGAGATCGAAATAGAGATCGCGGAAGTGTTGTACGGCATGATGAGACAACCTCAAGGACCGTCGAAACAAGAAATCATCGCCAACGATTCCACCAAGTTCGATTCCCGAGAATCTAATAAATCTTCCACCGATGCCAAGTCACCGATCTCAAACCCACAAAATTCAAGCTCTTCCGCCACACCCATGTCCGCTGTTGCTCCGAAGAGGAAAAGACCGCGACCGGTAAAGCACGAGGATGAGAATCCGGCGAGTTTGATCGTTCGGAGCAGTCCCATTTCGTCAACGACGAAGGCCGAGAGCGATCAGCCTTCAAAGATGGAGACTTGTTCTTCCAATTTGGATAAGAACAACGTGGGGTCTGTTTCCGAGAATCTGGCGCATTCTCAGACAGTTCAAATTATGCCGGAGCCGGTGAAGCCGGAGAACAACGAGTTTAAGCCGGCGGCGACGGAGGAAGCGGAGAAGCAGAAAGATGTGGGGTTGAGTGAGGTGGTGGTGTCTCCTCAGTTGCCCAAGAAGGAATCTCCTGTGCGACAAGTAGCAGATGATGACCGTGAAGATGTGAAAGCGACTAAAGCGAATCACTCAATATCCGAGAGTGATAATCAGCGAGAAGAGAAGTTCCAGATAGATCTGATGGCGCCACCTCCTCCATCGAGATCTTCTCCGGAAAGGGATGTGGAGAATAATAATAATATGGTGATTGACGCAGAAAAGGAAGTGAAGCCTATGACGAAGGAGGACGAGAAAGTGCTCAGAATGAACAAGGAAGTAGCAATGGTTATAGAAATGGAGAAAGTGAAAGCAAAAGCGGAAGAAACTGATTCGCAGAAACCAAGTTTTGTGCAGAAAGAAAGAGGAATTGACTTGCAGCTTGATTTGGAGAAAGTTGATAGGGTAGATACTAGTGGCAATGTTGGTAGTATGGTTAACAAGAAGCAGCAACATCAGAACGTTCAGAGGCAGCAAACGAACTCAGAGAAAAATGTTCAATCCAATTCTTTGCCTCTACCATTGTCTGTTCCTAGCTGGCCTGGCGGGCTTCCTCCCATGGGATATATGACACCTCTGCAAGGAGTTGTATCCATGGATGGGACTCCTGTGACATCTGCAGCAATACCGCCTCCCCATCTTCTTTTTAACCAGCCTCGGCCGAAAAGGTGTGCAACCCACTGCTACATTGCTCGCAATATATTGTGTCACCAGCAAATTGCGAGGATGAATTCATTCTGGCCAGCAGCAGCAGGTTCTGCATCACTATACGGGGCTAAGCCCAGCAATCTTAATGTTGTACCCTCCACAGAGTTGCATGGGAATGTTCCCGGCAGGGCTGCAAACTCTTCTCAGGACAAAGGGCATGGTATTGCCATGTTTCCAGGACATATTGGGAAGGACAAAGCCTCTCAGCCTGCCATTGTGGATAATTCATCAAGAAAACAAATTTTGCTTCAGCAAGCTTTACCCCCAGGAGCAGCACCTAGTAATATCTTGCATGGCCCTGCATTCATATTCCCGCTGAATCAGCAGCAAGCAGCTGCTGCGGCATCTGTTCGGCCTAGATCTGTGAAGTCTTTGCCAGTTTCTAGTAATGGAGCACCCTCCAGTGTCTCCAATTCAGCCCCGTCGAATGCTTCTGGCACAGGCACTGTGGCGGTGGCAGCGGCTGCAGCTGCCGCTGCCCCAACGATGAGCTTCAGCTATCCAAATATGCCTGGCAATGAAACTCCGTACTTGGCCATTTTGCAGAATAATGCTTACTCATTTCCAATACCAGCACATGTTGGTGGTCCACCTGGCTACCGTGGAACCCCCCATGCCCAGGCTTTTCCATTCTTCAATGGCTCCTTCTATTCTTCTCAAATGCTGCATCCTTCACAGATTCAGCAGCAGCAACTTCCTGCTCAGTCACAGCAGCAGAATCAACAGGGCCATCAAAATACAAGTATGTCTAGTGGATCCTCCTCTTCTCAGAAGCAGCATGCTCAAAATCAACAACAAAAGCCTAATAATAATGCTACTGGATCCAATGGGGGTGCAAGTTTGCAAGGCTTTCCTGTCACCAAAACCCCACCATCACAGCCACTGCAGTTGCAACAGCAACAACCGCAGCAGAGGCAGAATCATCACACTTCTCATCCAGCTCGCCAGGTTGAGTCTGAGATGGGTGGTGAAGACAGTCCATCTACTGCTGATAGTCGTCTCGCCCGTGCCACCATGAATATTTATGGCCAAAATTTCACAATGCCTATGCAGTCGCCAAACTTTGCTCTGATGACACCTGCCTCAATTGGTGCAGGAGGCTCCAATGGCAGTCACAGTGAAAAGAAGCAACCCCAGCAGCACCCTGGTCCAAAGGCTGGAGGTGAAACAGCTCCTGCATTTGCCATGTCATTTGCATCCATGAATGGAGCTACTGGCGCCTCTGGCCTTGACCTCTCATCTATTGCACAGAACAACCATTCAATCATGCAGAGTAATCATAACTATCATATAATGGCAGCACAAGCTGCCAGTGCTCAGTTGAAGAAGAGTTATCATGCCGCCGAGGAAGGGAAAAGTGTAGTTAATCCTTCTAATCTAGACGAAGATAGAAAAGCAATATCTGCTGGAAAAATTCCGGCAACAATGGGGCAATCCATTGCATTCGGAAGGCCAGATGTATCTGATCCCTCATTAGCGTCGTTATCGGGCGGCAACAATGTGATTGATACCTCGGGCCGTAATCTAAACCTTGGTTCTGCTTCTTCTCGTGCTTCTGCTTCTGTTATGCCTGCTGCCATCAGCACTAATGCAGCCAGTTCTCAGCAACAAATGCAGCGAAATCAGCAGCAGCAAATTCTTCAGCATCAGAAGCAGAATCAATTTGCAGCTGCAGCAGCCGCCGCGGCGGCCCGCAACAAGACCCCATCAACAAGCAATGGCAGTGTTTACTCTGATAACCTCCCTTCTACATCTTCAATGGCTAATAAGTTTCCCAGTGCTGTATCCGCATTCCCTCAAAACCTTGTACAGAGCAGTAACACCGTTGCTCAGTCACCTTCTCAGTGGAAGAACTCTTTAAGGGCAACAACCACTTCACAGTCGCCCCCATCCATGGCTTCAACAACACCATCCTCATCGGTCAAAAGTCACCCACAGCAGCAGGCTCGTTCCCAGCAACCTCACACCCAAATATCTTTCGCAACAAATCCAAAATCATCCGCAGCACAAGTTCAACCTGCAAGTTCCACCCAGTCCCCATCTCCCCCAGTCATGGTTGGCTCACCAACAACTTCATCAATATCAAAAAATACTGGTAGCCCAAGGACAACTTCAGCCTCAACAACCAACAATAAGATAAGCCAAAGTTCTTCTTTATCCTCTCAGCAAGCCAAGAACTCTTCTGCTGTGCCGGCGCGCAAATCGTCACCTGTTGGCAGCAGGAATGTGCCGTCAATACTTAATGTTCCTCAGCTAACTCCCCCTTCCAGCACTGGGAGTAAATCCCAACTGCCACAGCAGCAACAGAAGCAGCAGCAGCAAATACCAAAGCAAGCATTACCACAGGCCCAGCTTTTCTTCTCTAATCCTTACATGCATCCGCAATCCAACAGTTCCACATCCACCACCACAGTTCCAAGTGGTTATTACCTTCAACATCAACACCACCACCAACAACATCAACAGCGGCGTGGCCCTGAGCAGATGCAGCGGCCAGGCTCTTCCGGCACTTCCCCGGCCGTGAACAATGTGAAAGGCAGCAGTGCCTTACCTACGCAGGGTCTTTTGCATCCGGCACAGGTTGCTGCAATGCAACCCTCTGGGAGCCACCCTCAGTTTGTTCCTACTGGCTTTTCTTATGCTTCTTATCATGTTCATTCTGTGCCCTCAGTTCAAGTGAAGCCAGCGGAGCAGAAACAACCTGCGGGTGAGTAG

Predicted protein sequences of Glyma20g28260

Limit To All Plant Sequences

>Glyma20g28260.3   sequence type=predicted peptide   gene model=Glyma20g28260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRIREARRSTMAANGLTRRRHRTNNSLRDSPEEDGAMELQEPSRLRDRGGSGKKDRDRERERERERDRLGRSKKRRGDRLMHSSREDGGEDTSEESINDEDDDDDEDGGGGGSGSGSASVRMLPLNPSSLSNQHHRKSFPPAKVLRPTPPTTWKAADEMIGVSVPRKARSASTKRSHECWASSGGGIVAEQNHRQPSTSPVRAAAPASPSSSNASVRKKIKQNGGAKFRPPKTTTSSSSKPSSSAQDEIEIEIAEVLYGMMRQPQGPSKQEIIANDSTKFDSRESNKSSTDAKSPISNPQNSSSSATPMSAVAPKRKRPRPVKHEDENPASLIVRSSPISSTTKAESDQPSKMETCSSNLDKNNVGSVSENLAHSQTVQIMPEPVKPENNEFKPAATEEAEKQKDVGLSEVVVSPQLPKKESPVRQVADDDREDVKATKANHSISESDNQREEKFQIDLMAPPPPSRSSPERDVENNNNMVIDAEKEVKPMTKEDEKVLRMNKEVAMVIEMEKVKAKAEETDSQKPSFVQKERGIDLQLDLEKVDRVDTSGNVGSMVNKKQQHQNVQRQQTNSEKNVQSNSLPLPLSVPSWPGGLPPMGYMTPLQGVVSMDGTPVTSAAIPPPHLLFNQPRPKRCATHCYIARNILCHQQIARMNSFWPAAAGSASLYGAKPSNLNVVPSTELHGNVPGRAANSSQDKGHGIAMFPGHIGKDKASQPAIVDNSSRKQILLQQALPPGAAPSNILHGPAFIFPLNQQQAAAAASVRPRSVKSLPVSSNGAPSSVSNSAPSNASGTGTVAVAAAAAAAAPTMSFSYPNMPGNETPYLAILQNNAYSFPIPAHVGGPPGYRGTPHAQAFPFFNGSFYSSQMLHPSQIQQQQLPAQSQQQNQQGHQNTSMSSGSSSSQKQHAQNQQQKPNNNATGSNGGASLQGFPVTKTPPSQPLQLQQQQPQQRQNHHTSHPARQVESEMGGEDSPSTADSRLARATMNIYGQNFTMPMQSPNFALMTPASIGAGGSNGSHSEKKQPQQHPGPKAGGETAPAFAMSFASMNGATGASGLDLSSIAQNNHSIMQSNHNYHIMAAQAASAQLKKSYHAAEEGKSVVNPSNLDEDRKAISAGKIPATMGQSIAFGRPDVSDPSLASLSGGNNVIDTSGRNLNLGSASSRASASVMPAAISTNAASSQQQMQRNQQQQILQHQKQNQFAAAAAAAAARNKTPSTSNGSVYSDNLPSTSSMANKFPSAVSAFPQNLVQSSNTVAQSPSQWKNSLRATTTSQSPPSMASTTPSSSVKSHPQQQARSQQPHTQISFATNPKSSAAQVQPASSTQSPSPPVMVGSPTTSSISKNTGSPRTTSASTTNNKISQSSSLSSQQAKNSSAVPARKSSPVGSRNVPSILNVPQLTPPSSTGSKSQLPQQQQKQQQQIPKQALPQAQLFFSNPYMHPQSNSSTSTTTVPSGYYLQHQHHHQQHQQRRGPEQMQRPGSSGTSPAVNNVKGSSALPTQGLLHPAQVAAMQPSGSHPQFVPTGFSYASYHVHSVPSVQVKPAEQKQPAGE*

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